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Gene ZNF688TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
104 supporting clones for gene ZNF688 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB091670 testis .a 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
AK122680 cerebellum .a 528 to 2648 1 to 2121   tiling clone, available from FLJ,   2121/2121
(100 %)
5 diff
(99.8 %id)
BF802977 colon_ins .a 824 to 1049 1 to 227       227/227
(100 %)
22 diff
(90.4 %id)
NM_145271.3   .a 856 to 2676 1 to 1821   RefSeq, AAA Possibly primed on the genome, locally A rich (27/27 A in genome downstream of last aligned base) 1821/1821
(100 %)
0 diff
(100 %id)
BQ188280 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 913 to 1567 1 to 656       656/656
(100 %)
4 diff
(99.4 %id)
TI_151764236   .a 913 to 1612 740 to 40       701/1018
(68 %)
0 diff
(100 %id)
AI761767 colon, colon tumor, RER+ .a 1016 to 1563 548 to 1       548/548
(100 %)
2 diff
(99.7 %id)
BE676210 B-cell, chronic lymphotic leukemia .a 1016 to 1612 597 to 1       597/597
(100 %)
4 diff
(99.4 %id)
AI936024 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1040 to 1584 545 to 1       545/554
(98 %)
4 diff
(99.3 %id)
BF434536 Kidney .a 1046 to 1565 520 to 1       520/520
(100 %)
1 diff
(99.9 %id)
BF194787 fibrotheoma, ovary .a 1056 to 1610 555 to 1   tiling clone,   555/556
(99 %)
0 diff
(100 %id)
AA669104 germinal center B cell .a 1085 to 1545 462 to 1       462/462
(100 %)
6 diff
(98.8 %id)
BX116364 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1117 to 1603 487 to 1     Submitted on the opposite strand 487/487
(100 %)
0 diff
(100 %id)
AI540123 B-cell, chronic lymphotic leukemia .a 1117 to 1612 496 to 1       496/496
(100 %)
0 diff
(100 %id)
AI082350 B-cell, chronic lymphotic leukemia .a 1170 to 1612 443 to 1       443/443
(100 %)
4 diff
(99.1 %id)
AW294482   .a 1258 to 1611 354 to 1       354/354
(100 %)
0 diff
(100 %id)
AW977712   .a 1273 to 1612 346 to 7     Submitted on the opposite strand 340/481
(70 %)
0 diff
(100 %id)
AA828308 germinal center B cell .a 1314 to 1543 230 to 1       230/230
(100 %)
1 diff
(99.6 %id)
CN300591 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1377 to 1756 1 to 381       381/381
(100 %)
3 diff
(99.3 %id)
BP262311 small intestine .a 1526 to 2096 1 to 571       571/571
(100 %)
5 diff
(99.2 %id)
BI460665 testis .a 1527 to 2405 1 to 876       876/885
(98 %)
30 diff
(96.7 %id)
BF976193 B-cells, primary B-cells from tonsils (cell line) .a 1576 to 2330 1 to 747       747/1060
(70 %)
23 diff
(97.9 %id)
BC018997 Primary B-Cells from Tonsils .a 1577 to 2676 1 to 1100   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (27/27 A in genome downstream of last aligned base) 1100/1100
(100 %)
0 diff
(100 %id)
BG538505 lung .a 1582 to 2332 1 to 741       741/746
(99 %)
35 diff
(95.4 %id)
BQ943398 epidermoid carcinoma, cell line, lung .a 1606 to 2449 19 to 869       851/994
(85 %)
39 diff
(96.1 %id)
CD674907 eye, lens .a 1611 to 2195 1 to 585       585/585
(100 %)
0 diff
(100 %id)
CN300590 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1614 to 1971 378 to 21     Submitted on the opposite strand 358/378
(94 %)
0 diff
(100 %id)
CV028556 mixed .a 1634 to 2268 1 to 635       635/638
(99 %)
1 diff
(99.9 %id)
BU146335 epidermoid carcinoma, cell line, salivary gland .a 1674 to 2481 1 to 819       819/859
(95 %)
18 diff
(98.0 %id)
BQ668914 epidermoid carcinoma, cell line, salivary gland .a 1674 to 2347 1 to 674       674/962
(70 %)
10 diff
(99.0 %id)
AI350500 pooled germ cell tumors .a 1686 to 2203 518 to 1       518/522
(99 %)
5 diff
(99.1 %id)
BF116047 fibrotheoma, ovary .a 1712 to 2203 492 to 1       492/492
(100 %)
0 diff
(100 %id)
AW001155 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1715 to 2203 490 to 1       490/490
(100 %)
2 diff
(99.6 %id)
AA927861 pooled .a 1726 to 2201 471 to 3       469/480
(97 %)
4 diff
(99.2 %id)
BF003140 Prostate .a 1734 to 2203 471 to 1       471/471
(100 %)
2 diff
(99.6 %id)
BE551954 pooled germ cell tumors .a 1738 to 2202 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
AI766109 Kidney .a 1742 to 2203 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AI699485 pooled germ cell tumors .a 1757 to 2203 446 to 1       446/446
(100 %)
13 diff
(97.1 %id)
BM700374 eye, lens .a 1779 to 2251 1 to 473   fully sequenced,   473/473
(100 %)
1 diff
(99.8 %id)
AA454995 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1800 to 2155 1 to 355   fully sequenced,   353/353
(100 %)
5 diff
(98.6 %id)
AA455009 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1800 to 2152 15 to 363   fully sequenced,   351/365
(96 %)
13 diff
(96.5 %id)
AI871081 anaplastic oligodendroglioma, brain .a 1829 to 2185 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
AW183548 pooled .a 1829 to 2203 377 to 1       377/512
(73 %)
2 diff
(99.7 %id)
DR422154 eye, Pterygium .a 1833 to 2195 1 to 369       375/369
(101 %)
7 diff
(98.2 %id)
AI738773 colon, colon tumor, RER+ .a 1859 to 2194 336 to 1       336/336
(100 %)
0 diff
(100 %id)
CB046737 2 pooled tumors (clear cell type), Kidney .a 1860 to 2195 10 to 345   fully sequenced,   336/345
(97 %)
6 diff
(98.3 %id)
AI686515 Prostate .a 1869 to 2161 293 to 1       293/293
(100 %)
1 diff
(99.7 %id)
AA454996 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1879 to 2161 280 to 1   fully sequenced,   280/280
(100 %)
3 diff
(99.0 %id)
AA455010 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1879 to 2181 301 to 1   fully sequenced,   301/301
(100 %)
4 diff
(98.7 %id)
TI_151763035   .a 1887 to 2208 364 to 42       323/1017
(31 %)
5 diff
(99.6 %id)
BM931887 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1896 to 2195 1 to 300       300/300
(100 %)
0 diff
(100 %id)
BM931992 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1896 to 2195 1 to 300       300/300
(100 %)
0 diff
(100 %id)
BQ187361 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1896 to 2195 1 to 300       300/300
(100 %)
0 diff
(100 %id)
AI819907 2 pooled tumors (clear cell type), Kidney .a 1898 to 2167 270 to 1       270/276
(97 %)
5 diff
(98.2 %id)
BG987087 head_neck .a 1915 to 2107 193 to 7       187/193
(96 %)
0 diff
(100 %id)
CB046736 2 pooled tumors (clear cell type), Kidney .a 2055 to 2195 141 to 1   fully sequenced,   141/141
(100 %)
0 diff
(100 %id)
BU738028 eye, lens .a 2227 to 2653 441 to 15   fully sequenced, AAA   427/427
(100 %)
2 diff
(99.6 %id)
DA088576 cerebellum .b 1 to 432 2 to 433   tiling clone, capped   432/432
(100 %)
1 diff
(99.8 %id)
AW978376   .b 325 to 992 673 to 5     Submitted on the opposite strand 669/674
(99 %)
13 diff
(98.1 %id)
NM_001024683.1   .b 328 to 1460 1 to 1133 exact RefSeq, AAA Possibly primed on the genome, locally A rich (27/27 A in genome downstream of last aligned base) 1133/1133
(100 %)
0 diff
(100 %id)
BM011208 brain, neuroblastoma, cell line .b 365 to 1221 1 to 863   tiling clone,   863/864
(99 %)
24 diff
(97.3 %id)
TI_59380363   .b 366 to 1221 62 to 923       862/863
(99 %)
23 diff
(97.4 %id)
N53824 multiple sclerosis lesions .b 380 to 506 1 to 125   fully sequenced,   125/125
(100 %)
2 diff
(98.4 %id)
N51995 multiple sclerosis lesions .b 476 to 979 510 to 8   fully sequenced,   503/510
(98 %)
3 diff
(99.5 %id)
BF507917   .b 508 to 986 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
AA808291 germinal center B cell .b 554 to 916 363 to 1       363/363
(100 %)
0 diff
(100 %id)
BM787490 stomach .b 597 to 1126 1 to 530   tiling clone,   530/530
(100 %)
3 diff
(99.5 %id)
DB298210 cerebellum .b 904 to 1432 530 to 1   tiling clone,   530/530
(100 %)
1 diff
(99.9 %id)
DR006948 Spleen .c 1 to 595 1 to 596   tiling clone,   596/596
(100 %)
8 diff
(98.7 %id)
AI829953 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 207 to 924 716 to 1   tiling clone,   716/716
(100 %)
6 diff
(99.2 %id)
BI711643 insulinoma, Pancreas .c 394 to 941 1 to 548   fully sequenced,   548/548
(100 %)
5 diff
(99.1 %id)
BU071694 insulinoma, Pancreas .c 394 to 981 1 to 588   fully sequenced,   588/588
(100 %)
5 diff
(99.2 %id)
AI934928 2 pooled tumors (clear cell type), Kidney .c 438 to 906 470 to 1       470/470
(100 %)
3 diff
(99.4 %id)
AI598251 anaplastic oligodendroglioma, brain .c 440 to 906 467 to 1       467/467
(100 %)
2 diff
(99.6 %id)
BF116131 fibrotheoma, ovary .c 447 to 924 478 to 1       478/478
(100 %)
5 diff
(99.0 %id)
AI803197 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 449 to 924 476 to 1       476/476
(100 %)
0 diff
(100 %id)
BE675628 B-cell, chronic lymphotic leukemia .c 455 to 924 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
TI_149293266   .c 663 to 1421 817 to 62       756/1037
(72 %)
0 diff
(100 %id)
AI216266 carcinoid, lung .c 664 to 924 261 to 1       261/264
(98 %)
1 diff
(99.7 %id)
BM975012 lung .c 737 to 1412 675 to 1   tiling clone,   675/675
(100 %)
1 diff
(99.9 %id)
BE670893 carcinoid, lung .c 754 to 924 172 to 2       171/199
(85 %)
0 diff
(100 %id)
CD370940 Alveolar Macrophage, lung .c 786 to 1412 627 to 1       627/627
(100 %)
1 diff
(99.9 %id)
BI711240 insulinoma, Pancreas .c 911 to 1389 479 to 1   fully sequenced,   479/479
(100 %)
0 diff
(100 %id)
AF085979   .c 925 to 1392 1 to 468       468/478
(97 %)
1 diff
(99.8 %id)
BU073236 insulinoma, Pancreas .c 951 to 1416 466 to 1   fully sequenced,   466/466
(100 %)
1 diff
(99.8 %id)
BM676643 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 996 to 1412 416 to 1       416/420
(99 %)
4 diff
(99.1 %id)
BM714269 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1002 to 1338 1 to 337       337/337
(100 %)
0 diff
(100 %id)
BF478128 pooled germ cell tumors .c 1072 to 1374 303 to 1       303/348
(87 %)
7 diff
(98.0 %id)
AA341947 Spleen .c 1090 to 1374 285 to 1       285/285
(100 %)
0 diff
(100 %id)
AW964994   .c 1091 to 1374 1 to 284   AAA   284/284
(100 %)
0 diff
(100 %id)
AA341948 Spleen .c 1093 to 1281 1 to 189       189/189
(100 %)
1 diff
(99.5 %id)
F28515 pectoral muscle (after mastectomy) .c 1109 to 1387 1 to 278       278/278
(100 %)
1 diff
(99.7 %id)
BU739049 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1201 to 1429 246 to 18   tiling clone,   229/246
(93 %)
0 diff
(100 %id)
GD139175   .c 1282 to 1410 1 to 129       129/129
(100 %)
3 diff
(97.7 %id)
GD156997   .c 1282 to 1374 1 to 93   AAA   93/93
(100 %)
4 diff
(95.7 %id)
EC463038 Prostate .c 1318 to 1396 1 to 79       79/83
(95 %)
1 diff
(98.8 %id)
AI366701 anaplastic oligodendroglioma, brain .d 1 to 427 427 to 1 exact tiling clone,   427/427
(100 %)
0 diff
(100 %id)
BU069539 insulinoma, Pancreas .e 1 to 429 1 to 429 G2R R3G tiling clone, fully sequenced,   429/429
(100 %)
5 diff
(98.9 %id)
AI364473 anaplastic oligodendroglioma, brain .e 20 to 485 1 to 467     Submitted on the opposite strand 467/467
(100 %)
6 diff
(98.8 %id)
AA528137 normal prostate, Prostate .e 42 to 547 1 to 506   tiling clone, Submitted on the opposite strand 506/523
(96 %)
19 diff
(96.4 %id)
BU069333 insulinoma, Pancreas .e 196 to 437 242 to 1   fully sequenced,   242/242
(100 %)
0 diff
(100 %id)
AI803327   .f 1 to 563 562 to 1   tiling clone,   562/562
(100 %)
2 diff
(99.7 %id)
AI014826   .f 7 to 589 579 to 1   tiling clone,   579/579
(100 %)
4 diff
(99.4 %id)
AI394187 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 160 to 597 438 to 1       438/438
(100 %)
0 diff
(100 %id)
AI394188 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 222 to 606 385 to 1 exact tiling clone,   385/385
(100 %)
0 diff
(100 %id)
AI701130 carcinoid, lung .g 1 to 244 1 to 244 G40V tiling clone, Submitted on the opposite strand 244/244
(100 %)
1 diff
(99.6 %id)
AW297774   .h 1 to 562 562 to 1 exact tiling clone,   562/562
(100 %)
1 diff
(99.9 %id)
BE674766 B-cell, chronic lymphotic leukemia .i-u 1 to 557 556 to 1 Q14K E15S P16Q K17R G18A ... tiling clone,   556/556
(100 %)
1 diff
(99.9 %id)
BE676431 B-cell, chronic lymphotic leukemia .i-u 39 to 557 519 to 1 exact tiling clone,   519/519
(100 %)
1 diff
(99.9 %id)
AA600856 breast .i-u 191 to 534 342 to 1 exact     342/342
(100 %)
4 diff
(98.9 %id)
BF508666   Gene ZNF688, variant not shown         Suspected internal deletion, this clone was ignored    
BE550794 carcinoid, lung Gene ZNF688, variant not shown         This clone was ignored    
CB114246 Liver Gene ZNF688, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C