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Gene C2CD4ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
68 supporting clones for gene C2CD4A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM055223 Islets of Langerhans, Pancreas .a-u 1 to 221 3 to 222   tiling clone,   220/222
(99 %)
6 diff
(97.3 %id)
CB178509 Pancreas, Purified pancreatic islet .a-u 103 to 346 11 to 254   tiling clone,   244/256
(95 %)
1 diff
(99.7 %id)
BM127694 Islets of Langerhans, Pancreas .a-u 215 to 443 23 to 251   tiling clone,   229/251
(91 %)
6 diff
(97.7 %id)
CK906222 Islets of Langerhans, Pancreas .a-u 701 to 1033 1 to 333   tiling clone, fully sequenced,   333/333
(100 %)
0 diff
(100 %id)
BI966709 Islets of Langerhans, Pancreas .a-u 743 to 1032 290 to 1       290/290
(100 %)
6 diff
(98.0 %id)
BU948771 Pancreas, Purified pancreatic islet .a-u 800 to 974 175 to 1       175/175
(100 %)
0 diff
(100 %id)
CK906221 Islets of Langerhans, Pancreas .a-u 850 to 1001 152 to 1   fully sequenced,   152/152
(100 %)
0 diff
(100 %id)
BG656266 Pancreas, Purified pancreatic islet .a-u 1033 to 1578 1 to 546   tiling clone,   546/546
(100 %)
1 diff
(99.9 %id)
AW197466 pooled germ cell tumors .a-u 1034 to 1314 1 to 281     Submitted on the opposite strand 281/281
(100 %)
0 diff
(100 %id)
AW015108   .a-u 1035 to 1348 1 to 314     Submitted on the opposite strand 314/323
(97 %)
0 diff
(100 %id)
AW136524   .a-u 1035 to 1336 1 to 302     Submitted on the opposite strand 302/328
(92 %)
1 diff
(99.7 %id)
AW136634   .a-u 1035 to 1338 1 to 304     Submitted on the opposite strand 304/322
(94 %)
1 diff
(99.7 %id)
AI341395 pooled germ cell tumors .a-u 1052 to 1314 1 to 263     Submitted on the opposite strand 263/263
(100 %)
0 diff
(100 %id)
AI656199 pooled germ cell tumors .a-u 1052 to 1314 1 to 263     Submitted on the opposite strand 263/263
(100 %)
0 diff
(100 %id)
AI913984 colon .a-u 1052 to 1414 1 to 364     Submitted on the opposite strand 364/370
(98 %)
2 diff
(99.5 %id)
AW593828 pooled germ cell tumors .a-u 1068 to 1314 1 to 247     Submitted on the opposite strand 247/247
(100 %)
0 diff
(100 %id)
AI732922 carcinoid, lung .a-u 1077 to 1317 1 to 240     Submitted on the opposite strand 240/240
(100 %)
4 diff
(98.4 %id)
AI791240 carcinoid, lung .a-u 1081 to 1333 270 to 18     Submitted on the opposite strand 253/270
(93 %)
0 diff
(100 %id)
AI832148 colon, colon tumor, RER+ .a-u 1083 to 1398 1 to 316     Submitted on the opposite strand 316/316
(100 %)
0 diff
(100 %id)
AA826545 carcinoid, lung .a-u 1102 to 1317 1 to 214     Submitted on the opposite strand 214/214
(100 %)
7 diff
(96.8 %id)
AA953156 carcinoid, lung .a-u 1102 to 1445 1 to 341     Submitted on the opposite strand 341/341
(100 %)
8 diff
(97.7 %id)
AA971695.
matches multiple genes
carcinoid, lung .a-u 1102 to 1309 1 to 197     Submitted on the opposite strand, also hits gene C2CD4B 197/197
(100 %)
16 diff
(91.9 %id)
AW001393 colon, colonic mucosa from 3 patients with Crohn'sdisease .a-u 1102 to 1598 1 to 498     Submitted on the opposite strand 498/498
(100 %)
2 diff
(99.6 %id)
BE467405 carcinoid, lung .a-u 1102 to 1314 1 to 213     Submitted on the opposite strand 213/213
(100 %)
0 diff
(100 %id)
BX648578 human endometrium .a-u 1282 to 3100 1 to 1822   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 1822/1822
(100 %)
4 diff
(99.8 %id)
BM128587 Islets of Langerhans, Pancreas .a-u 2591 to 3106 1 to 516       516/516
(100 %)
0 diff
(100 %id)
BM966752 Islets of Langerhans, Pancreas .a-u 2712 to 3274 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
BM126839 Islets of Langerhans, Pancreas .a-u 2736 to 3032 2 to 298   fully sequenced,   297/298
(99 %)
6 diff
(98.0 %id)
CK818871 Islets of Langerhans, Pancreas .a-u 2738 to 3100 19 to 381   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 363/381
(95 %)
6 diff
(98.5 %id)
BM126278 Islets of Langerhans, Pancreas .a-u 2742 to 3077 8 to 343       336/343
(97 %)
10 diff
(97.1 %id)
BM126008 Islets of Langerhans, Pancreas .a-u 2765 to 3111 349 to 3       347/349
(99 %)
0 diff
(100 %id)
BE218239 carcinoid, lung .a-u 2928 to 3511 584 to 1   tiling clone,   584/584
(100 %)
0 diff
(100 %id)
BX103846 carcinoid, lung .a-u 2981 to 3408 1 to 428       428/428
(100 %)
1 diff
(99.8 %id)
BM126582 Islets of Langerhans, Pancreas .a-u 3002 to 3113 112 to 1   fully sequenced,   112/112
(100 %)
1 diff
(99.2 %id)
BF448388 carcinoid, lung .a-u 3005 to 3442 460 to 23   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 438/438
(100 %)
4 diff
(99.1 %id)
AI703451 carcinoid, lung .a-u 3010 to 3442 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
BF196228 carcinoid, lung .a-u 3043 to 3442 420 to 22   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 399/399
(100 %)
4 diff
(99.0 %id)
BG149732 carcinoid, lung .a-u 3056 to 3444 392 to 2       391/392
(99 %)
0 diff
(100 %id)
BF224220 carcinoid, lung .a-u 3056 to 3444 390 to 2       389/390
(99 %)
0 diff
(100 %id)
BF223321 carcinoid, lung .a-u 3056 to 3444 390 to 2       389/390
(99 %)
0 diff
(100 %id)
AW612262 carcinoid, lung .a-u 3146 to 3442 300 to 1       300/300
(100 %)
7 diff
(97.7 %id)
AA931812 carcinoid, lung .a-u 3320 to 3461 142 to 1       142/142
(100 %)
1 diff
(99.3 %id)
BF508481   .b 1 to 426 443 to 18   tiling clone,   426/443
(96 %)
0 diff
(100 %id)
BM830004 stomach .b 401 to 919 1 to 519       519/519
(100 %)
2 diff
(99.7 %id)
BM753554 stomach .b 402 to 743 1 to 342       342/342
(100 %)
5 diff
(98.6 %id)
NM_207322.2   .b 403 to 3840 1 to 3438 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 3438/3438
(100 %)
0 diff
(100 %id)
BM742013 stomach .b 403 to 1007 1 to 605   tiling clone,   605/605
(100 %)
0 diff
(100 %id)
BM745824 stomach .b 403 to 704 1 to 302       302/302
(100 %)
1 diff
(99.7 %id)
BM753559 stomach .b 403 to 526 1 to 124       124/124
(100 %)
2 diff
(98.4 %id)
BM753582 stomach .b 403 to 685 1 to 289       289/289
(100 %)
8 diff
(97.3 %id)
BM753743 stomach .b 403 to 615 1 to 214       214/214
(100 %)
3 diff
(98.6 %id)
BM783372 stomach .b 403 to 901 1 to 499       499/499
(100 %)
0 diff
(100 %id)
BM766044 stomach .b 403 to 892 1 to 490       490/490
(100 %)
0 diff
(100 %id)
BM772827 stomach .b 403 to 947 1 to 545       545/545
(100 %)
0 diff
(100 %id)
BM772844 stomach .b 403 to 899 1 to 497       497/497
(100 %)
0 diff
(100 %id)
BM829924 stomach .b 403 to 890 1 to 488       488/488
(100 %)
0 diff
(100 %id)
BM829580 stomach .b 403 to 740 1 to 339       339/339
(100 %)
17 diff
(95.0 %id)
BM821372 stomach .b 404 to 875 1 to 470       470/470
(100 %)
3 diff
(99.4 %id)
BU071948 Pancreas, Purified pancreatic islet .b 409 to 800 1 to 391       391/391
(100 %)
11 diff
(97.2 %id)
AL110468 uterus .b 412 to 1008 1 to 597       597/597
(100 %)
6 diff
(99.0 %id)
BM069790 Islets of Langerhans, Pancreas .b 415 to 629 1 to 213       213/213
(100 %)
7 diff
(96.8 %id)
BM770476 stomach .b 421 to 866 1 to 448       448/448
(100 %)
4 diff
(99.2 %id)
AF504646 colon .b 429 to 1834 1 to 1406   tiling clone,   1406/1407
(99 %)
6 diff
(99.6 %id)
BM354007 Islets of Langerhans, Pancreas .b 429 to 849 1 to 421       421/421
(100 %)
6 diff
(98.6 %id)
AW583099 Islets of Langerhans, Pancreas .b 434 to 906 1 to 473       473/473
(100 %)
5 diff
(99.0 %id)
BM052941 Islets of Langerhans, Pancreas .b 435 to 902 1 to 468       468/468
(100 %)
1 diff
(99.8 %id)
BM068855 Islets of Langerhans, Pancreas .b 435 to 807 1 to 373       373/373
(100 %)
0 diff
(100 %id)
BM354002 Islets of Langerhans, Pancreas .b 445 to 715 1 to 271       271/271
(100 %)
3 diff
(98.9 %id)
BI962662 Islets of Langerhans, Pancreas .b 460 to 930 1 to 471       471/476
(98 %)
1 diff
(99.8 %id)
BM054812 Islets of Langerhans, Pancreas .b 1109 to 1435 328 to 1       328/328
(100 %)
2 diff
(99.4 %id)
BM273079 Islets of Langerhans, Pancreas .b 1218 to 1436 219 to 1       219/219
(100 %)
6 diff
(97.3 %id)
BI789183 Islets of Langerhans, Pancreas .b 1229 to 1435 207 to 1       207/207
(100 %)
4 diff
(98.1 %id)
AW139874   Gene C2CD4A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C