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Gene C11orf84TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
137 supporting clones for gene C11orf84 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR622295 B cells (Ramos cell line) Cot 25-normalized .a 1 to 1985 1 to 1985 exact tiling clone,   1985/1985
(100 %)
0 diff
(100 %id)
CD358548 testis .a 6 to 621 1 to 622       622/983
(63 %)
18 diff
(98.2 %id)
AL561267 B cells from Burkitt lymphoma .a 22 to 995 23 to 994       972/1018
(95 %)
18 diff
(98.3 %id)
BQ071330 brain, neuroblastoma, cell line .a 32 to 715 1 to 694       694/1301
(53 %)
19 diff
(98.6 %id)
BQ071899 brain, neuroblastoma, cell line .a 32 to 757 1 to 731       731/1132
(64 %)
12 diff
(99.0 %id)
CN289501 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 49 to 179 1 to 131       131/131
(100 %)
2 diff
(98.5 %id)
DR007175 Spleen .a 49 to 689 1 to 641       641/641
(100 %)
5 diff
(99.3 %id)
AL525102 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 52 to 946 1 to 894       894/894
(100 %)
3 diff
(99.7 %id)
BM463529 leiomyosarcoma, uterus .a 52 to 422 1 to 371       371/1226
(30 %)
10 diff
(99.2 %id)
CA976178 sciatic nerve .a 57 to 853 1 to 804       804/932
(86 %)
34 diff
(96.4 %id)
BC056402 Brain, adult, 6 pooled whole brains .a 64 to 2023 1 to 1960   tiling clone, available from MGC, AAA   1960/1960
(100 %)
2 diff
(99.9 %id)
BM926119 brain .a 64 to 907 24 to 876       853/1157
(73 %)
26 diff
(97.8 %id)
NM_138471.1   .a 64 to 2023 1 to 1960   RefSeq, AAA   1960/1960
(100 %)
2 diff
(99.9 %id)
CT001982 T-Lymphocytes .a 75 to 505 1 to 431       431/442
(97 %)
2 diff
(99.6 %id)
BU521243 leiomyosarcoma, uterus .a 76 to 818 5 to 747       743/823
(90 %)
7 diff
(99.2 %id)
BX397628 Placenta Cot 25-normalized .a 82 to 1029 1 to 945       945/1052
(89 %)
11 diff
(99.0 %id)
AL556297 placenta .a 83 to 906 1 to 824       824/824
(100 %)
2 diff
(99.8 %id)
BX425376 neuroblastoma .a 96 to 959 9 to 872       864/872
(99 %)
9 diff
(99.0 %id)
BX393946 Neuroblastoma Cot 25-normalized .a 96 to 944 9 to 860       852/860
(99 %)
7 diff
(99.2 %id)
BM925859 brain .a 103 to 979 12 to 896       885/1132
(78 %)
30 diff
(97.4 %id)
CR602254 Neuroblastoma Cot 25-normalized .a 105 to 1974 1 to 1870       1870/1870
(100 %)
0 diff
(100 %id)
BX354648 Neuroblastoma Cot 25-normalized .a 105 to 1027 1 to 922   fully sequenced,   922/922
(100 %)
3 diff
(99.7 %id)
BX400680   .a 105 to 1032 1 to 930       930/930
(100 %)
20 diff
(97.9 %id)
CR597472 Neuroblastoma Cot 25-normalized .a 114 to 1991 1 to 1878       1878/1878
(100 %)
0 diff
(100 %id)
BX332412 Neuroblastoma Cot 25-normalized .a 115 to 992 1 to 873   fully sequenced,   873/873
(100 %)
6 diff
(99.4 %id)
BX401365   .a 122 to 1093 1 to 969       969/969
(100 %)
4 diff
(99.6 %id)
AL559593 T cells from T cell leukemia .a 140 to 1200 20 to 1070       1051/1070
(98 %)
25 diff
(97.7 %id)
DR004469 placenta .a 172 to 788 1 to 617       617/617
(100 %)
4 diff
(99.4 %id)
CD671416 eye, Iris .a 213 to 658 1 to 446       446/446
(100 %)
5 diff
(98.9 %id)
BI831574 brain, medulla .a 226 to 966 62 to 814       753/814
(92 %)
21 diff
(97.5 %id)
TI_57172323   .a 226 to 966 94 to 846       753/846
(89 %)
21 diff
(97.6 %id)
BC002782 Uterus, endometrium adenocarcinoma .a 229 to 2023 1 to 1795   available from MGC, AAA   1795/1795
(100 %)
0 diff
(100 %id)
BC007540 Uterus, endometrium adenocarcinoma .a 229 to 2023 1 to 1795   available from MGC, AAA   1795/1795
(100 %)
0 diff
(100 %id)
BE378686 endometrium, adenocarcinoma cell line, uterus .a 247 to 1032 1 to 780       780/962
(81 %)
16 diff
(98.4 %id)
BE390739 endometrium, adenocarcinoma cell line, uterus .a 248 to 860 1 to 618       618/618
(100 %)
8 diff
(98.8 %id)
TI_1948212043   .a 299 to 898 132 to 734       603/1391
(43 %)
21 diff
(98.5 %id)
TI_1948212184   .a 299 to 937 131 to 768   fully sequenced,   638/768
(83 %)
7 diff
(99.1 %id)
TI_1948212324   .a 299 to 906 128 to 735       608/1323
(45 %)
7 diff
(99.5 %id)
TI_1948212463   .a 299 to 1186 134 to 1027       894/1252
(71 %)
60 diff
(95.3 %id)
EL734460 mixed .a 300 to 906 1 to 607       607/614
(98 %)
2 diff
(99.7 %id)
W04594 lung .a 389 to 703 26 to 339       314/339
(92 %)
16 diff
(95.3 %id)
CF139069 CNCAP(3)T-225 cell line, Prostate .a 445 to 906 12 to 472       461/479
(96 %)
11 diff
(97.8 %id)
CN255272 embryonic stem cells, DMSO-treated H9 cellline .a 556 to 1062 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
AI087989 pooled .a 636 to 1030 89 to 483     Submitted on the opposite strand 395/490
(80 %)
11 diff
(97.8 %id)
BU754412 placenta .a 636 to 1030 106 to 500     Submitted on the opposite strand 395/486
(81 %)
11 diff
(97.8 %id)
BG674797 skin .a 684 to 1555 1 to 878       878/879
(99 %)
18 diff
(98.0 %id)
BE256102 eye, retinoblastoma .a 704 to 1282 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
CX870974 embryonic stem .a 743 to 1480 1 to 739       739/739
(100 %)
1 diff
(99.9 %id)
BE789844 large cell carcinoma, lung .a 872 to 1429 1 to 558       558/568
(98 %)
2 diff
(99.7 %id)
TI_1948212185   .a 876 to 1451 692 to 116   fully sequenced,   577/692
(83 %)
5 diff
(99.3 %id)
CN255271 embryonic stem cells, DMSO-treated H9 cellline .a 877 to 1512 1 to 637       637/637
(100 %)
3 diff
(99.6 %id)
TI_1948212325   .a 901 to 1451 670 to 117       554/1368
(40 %)
15 diff
(99.0 %id)
BF983555 duodenal adenocarcinoma, cell line, small intestine .a 907 to 1211 496 to 803       308/905
(34 %)
27 diff
(97.1 %id)
AL582542 B cells from Burkitt lymphoma .a 930 to 1985 1055 to 1       1055/1069
(98 %)
32 diff
(97.1 %id)
BX332411 Neuroblastoma Cot 25-normalized .a 962 to 1991 1025 to 1   fully sequenced,   1025/1025
(100 %)
10 diff
(99.1 %id)
BG113347 Bone, osteosarcoma, cell line .a 981 to 1462 1 to 487       487/947
(51 %)
11 diff
(98.9 %id)
BX354647 Neuroblastoma Cot 25-normalized .a 997 to 1964 980 to 11   fully sequenced,   970/980
(98 %)
1 diff
(99.9 %id)
AL562446 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1056 to 1935 948 to 68       881/948
(92 %)
3 diff
(99.7 %id)
BG120630 adenocarcinoma, cell line, Liver .a 1078 to 1734 1 to 660       660/1069
(61 %)
21 diff
(98.1 %id)
TI_154125021   .a 1110 to 2017 964 to 63   AAA   902/985
(91 %)
35 diff
(96.5 %id)
BG752025 eye, normal pigmented retinal epithelium .a 1152 to 1731 1 to 579       579/824
(70 %)
12 diff
(98.6 %id)
CR749697 melanoma (MeWo cell line) .a 1168 to 2020 1 to 853   available from DKFZ, AAA   853/853
(100 %)
0 diff
(100 %id)
AL578590 placenta .a 1230 to 1978 753 to 6       748/753
(99 %)
0 diff
(100 %id)
BX401364   .a 1230 to 1883 658 to 4       655/658
(99 %)
0 diff
(100 %id)
BX330953   .a 1734 to 2015 283 to 1       283/283
(100 %)
6 diff
(97.9 %id)
BX329467 Neuroblastoma Cot 25-normalized .a 1740 to 2018 286 to 8       279/286
(97 %)
0 diff
(100 %id)
BX373450 Placenta Cot 25-normalized .a 1743 to 2006 264 to 1       264/264
(100 %)
5 diff
(98.2 %id)
TI_154169281   .b 1 to 593 79 to 666   tiling clone,   588/589
(99 %)
25 diff
(95.8 %id)
BG029855 breast, mammary adenocarcinoma, cell line .b 355 to 1168 1 to 821   tiling clone,   821/1065
(77 %)
57 diff
(94.7 %id)
AA643577 colon, colon tumor RER+ .b 537 to 943 407 to 1   tiling clone,   407/407
(100 %)
0 diff
(100 %id)
BX952643   .b 882 to 1509 1 to 629   tiling clone,   629/629
(100 %)
1 diff
(99.9 %id)
BQ070296 brain, neuroblastoma, cell line .c 1 to 922 1 to 935 E16G Q17A H18A H20S T21H ... tiling clone,   935/1010
(92 %)
59 diff
(94.2 %id)
BI117619 lung, small cell carcinoma .c 590 to 1319 1 to 733   tiling clone,   733/738
(99 %)
23 diff
(96.9 %id)
AA057634 cornea .c 819 to 1422 608 to 1   tiling clone,   608/609
(99 %)
12 diff
(98.1 %id)
BF541019 hypernephroma, Kidney .d 1 to 676 1 to 662 R31E M32C P33Q A34P E35K ... tiling clone,   662/854
(77 %)
25 diff
(97.1 %id)
BQ893891 dorsal root ganglia .e 1 to 823 1 to 841 exact tiling clone,   841/967
(86 %)
36 diff
(96.3 %id)
TI_154024284   .f-u 1 to 704 56 to 760   tiling clone, Submitted on the opposite strand 705/779
(90 %)
6 diff
(99.3 %id)
CA439568 lung, Lung Focal Fibrosis .f-u 1 to 702 2 to 704   tiling clone, AAA Submitted on the opposite strand 703/704
(99 %)
6 diff
(99.2 %id)
DB498255 hypothalamus .f-u 88 to 585 1 to 498       498/498
(100 %)
0 diff
(100 %id)
AK091493 brain .f-u 204 to 3640 1 to 3433   tiling clone, available from FLJ,   3433/3433
(100 %)
11 diff
(99.7 %id)
DA501573 brain .f-u 205 to 776 2 to 569   capped   568/568
(100 %)
4 diff
(99.3 %id)
AW071161 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .f-u 223 to 689 465 to 1       465/465
(100 %)
4 diff
(99.2 %id)
DB569352 hypothalamus .f-u 229 to 687 1 to 459     Submitted on the opposite strand 459/461
(99 %)
2 diff
(99.6 %id)
BE007913 breast_normal .f-u 261 to 628 1 to 367       367/367
(100 %)
7 diff
(98.1 %id)
AW272855 colon, moderately-differentiated adenocarcinoma .f-u 489 to 689 201 to 1       201/201
(100 %)
0 diff
(100 %id)
BF807829 colon_ins .f-u 760 to 1182 4 to 421       418/421
(99 %)
21 diff
(95.1 %id)
BF807704 colon_ins .f-u 761 to 1188 11 to 440       430/440
(97 %)
6 diff
(98.7 %id)
BF807675 colon_ins .f-u 765 to 1189 440 to 16     Submitted on the opposite strand 425/440
(96 %)
0 diff
(100 %id)
BF807705 colon_ins .f-u 765 to 1190 442 to 17     Submitted on the opposite strand 426/442
(96 %)
0 diff
(100 %id)
CN288237 embryonic stem cells, cell lines H1, H7, andH9 .f-u 772 to 1463 1 to 691       691/691
(100 %)
3 diff
(99.6 %id)
BF807831 colon_ins .f-u 785 to 1200 420 to 5     Submitted on the opposite strand 416/420
(99 %)
0 diff
(100 %id)
BF807674 colon_ins .f-u 786 to 1188 1 to 403       403/403
(100 %)
15 diff
(96.3 %id)
AI907057 breast .f-u 1198 to 1628 491 to 62   tiling clone,   430/514
(83 %)
0 diff
(100 %id)
AK092098   .f-u 1563 to 3640 1 to 2079   tiling clone, available from FLJ,   2079/2079
(100 %)
4 diff
(99.9 %id)
DA685626   .f-u 1564 to 2105 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
AA634051   .f-u 2263 to 2888 1 to 620   tiling clone, Submitted on the opposite strand 620/628
(98 %)
15 diff
(97.7 %id)
T82150 liver and spleen .f-u 2285 to 2624 1 to 351       351/352
(99 %)
19 diff
(94.7 %id)
T82149.
matches multiple genes
liver and spleen .f-u 2286 to 2596 1 to 316     also hits gene samiru 316/316
(100 %)
8 diff
(97.5 %id)
BQ009932 Chondrosarcoma, Left Pubic Bone .f-u 2945 to 3640 714 to 19   AAA   696/696
(100 %)
0 diff
(100 %id)
TI_59382341   .f-u 2949 to 3445 114 to 617       504/985
(51 %)
19 diff
(98.1 %id)
BM013097 brain, neuroblastoma, cell line .f-u 2951 to 3445 1 to 502       502/983
(51 %)
19 diff
(98.1 %id)
AI866590 brain, tumor, 5 pooled (see description) .f-u 2956 to 3643 679 to 1       679/728
(93 %)
24 diff
(96.8 %id)
AA411934   .f-u 3004 to 3294 1 to 294       294/294
(100 %)
9 diff
(97.0 %id)
CA415995 Chondrosarcoma Cell line .f-u 3043 to 3640 621 to 19   AAA   603/603
(100 %)
10 diff
(98.4 %id)
BG960327 colon .f-u 3044 to 3247 224 to 24       201/227
(88 %)
10 diff
(95.6 %id)
AA354503   .f-u 3052 to 3465 1 to 418       418/419
(99 %)
7 diff
(98.4 %id)
DB315883 brain .f-u 3091 to 3640 551 to 1       551/551
(100 %)
2 diff
(99.7 %id)
BM463482 embryonal carcinoma, cell line, testis .f-u 3094 to 3642 1 to 549       549/551
(99 %)
1 diff
(99.9 %id)
BM903854 eye, retinoblastoma .f-u 3095 to 3640 1 to 546   AAA   546/546
(100 %)
0 diff
(100 %id)
DB322913   .f-u 3096 to 3640 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
W78226 heart .f-u 3100 to 3524 1 to 428   fully sequenced,   428/428
(100 %)
10 diff
(97.7 %id)
AA625315 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f-u 3112 to 3602 1 to 490       490/490
(100 %)
7 diff
(98.6 %id)
CN255273 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 3178 to 3335 1 to 158       158/158
(100 %)
1 diff
(99.4 %id)
AA393324   .f-u 3180 to 3624 8 to 450       443/450
(98 %)
6 diff
(98.7 %id)
BU633553 cell lines, Chondrosarcoma .f-u 3210 to 3643 452 to 19   AAA   434/434
(100 %)
8 diff
(98.2 %id)
AA360712   .f-u 3225 to 3465 1 to 241       241/241
(100 %)
1 diff
(99.6 %id)
CK299859 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f-u 3240 to 3643 420 to 16   AAA   405/412
(98 %)
4 diff
(99.1 %id)
TI_151811611   .f-u 3240 to 3643 74 to 481   fully sequenced, AAA   408/408
(100 %)
5 diff
(98.8 %id)
N58867 multiple sclerosis lesions .f-u 3245 to 3642 416 to 9       408/416
(98 %)
0 diff
(100 %id)
AI936343 Kidney .f-u 3328 to 3642 317 to 3       315/317
(99 %)
0 diff
(100 %id)
AA394273 ovarian tumor, ovary .f-u 3339 to 3637 1 to 298   fully sequenced,   298/298
(100 %)
2 diff
(99.4 %id)
BF195354 carcinoid, lung .f-u 3354 to 3623 272 to 2       271/272
(99 %)
0 diff
(100 %id)
AW131772 brain, medulloblastoma .f-u 3356 to 3640 299 to 15   AAA   285/286
(99 %)
7 diff
(97.6 %id)
AW303889 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f-u 3361 to 3642 283 to 2       282/283
(99 %)
0 diff
(100 %id)
AA723034 pineal gland .f-u 3372 to 3636 265 to 1       265/265
(100 %)
2 diff
(99.3 %id)
BX419430 brain, fetal brain .f-u 3374 to 4292 1 to 913 L96F L97F A98F F99S F101S ... tiling clone,   913/913
(100 %)
41 diff
(95.6 %id)
AA678817   .f-u 3377 to 3640 303 to 40   AAA   264/264
(100 %)
0 diff
(100 %id)
AI612823 ovary, tumor, 5 pooled (see description) .f-u 3379 to 3640 262 to 1       262/263
(99 %)
0 diff
(100 %id)
TI_151732226   .f-u 3379 to 3643 340 to 75   fully sequenced, AAA   266/266
(100 %)
1 diff
(99.7 %id)
AI538291 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .f-u 3380 to 3644 265 to 1       265/265
(100 %)
1 diff
(99.7 %id)
AW138401   .f-u 3385 to 3640 273 to 18   AAA   256/256
(100 %)
2 diff
(99.3 %id)
AA411935   .f-u 3425 to 3642 219 to 2       218/219
(99 %)
0 diff
(100 %id)
AA293710 ovarian tumor, ovary .f-u 3449 to 3638 190 to 1   fully sequenced,   190/190
(100 %)
1 diff
(99.5 %id)
W70336 heart .f-u 3504 to 3643 141 to 1   fully sequenced,   141/141
(100 %)
1 diff
(99.3 %id)
BX431113 brain, fetal brain .f-u 4139 to 5036 1 to 897   tiling clone,   897/897
(100 %)
17 diff
(98.2 %id)
BY996556   .f-u 4350 to 4957 10 to 620   tiling clone,   611/620
(98 %)
6 diff
(99.1 %id)
BE798697 lung, small cell carcinoma .f-u 5025 to 4889 660 to 496       645/827
(77 %)
58 diff
(93.0 %id)
BU619979 cell lines, Chondrosarcoma .g 1 to 546 564 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 546/546
(100 %)
0 diff
(100 %id)
BM050422 eye, normal pigmented retinal epithelium .h 1 to 559 1 to 559 G4V A43H P44Q S45A V46C ... tiling clone,   559/559
(100 %)
5 diff
(99.2 %id)
AV752927 Pituitary Gene C11orf84, variant not shown              
AA370471 Prostate Gene C11orf84, variant not shown              
CN273330 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene C11orf84, variant not shown              
AW818672 stomach Gene C11orf84, variant not shown              
DB371319 ovary, tumor tissue Gene C11orf84, variant not shown              
DA812043 ovary, tumor tissue Gene C11orf84, variant not shown       capped      
W63564 heart Gene C11orf84, variant not shown              
W63566 heart Gene C11orf84, variant not shown              
AA806428 germinal center B cell Gene C11orf84, variant not shown              
AI361713 B-cell, chronic lymphotic leukemia Gene C11orf84, variant not shown         Suspected internal deletion, this clone was ignored    
AW207655   Gene C11orf84, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AW292684   Gene C11orf84, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BE463965 pooled germ cell tumors Gene C11orf84, variant not shown              
BE644926 pooled Gene C11orf84, variant not shown         Suspected internal deletion, this clone was ignored    
BM470890 eye, retinoblastoma Gene C11orf84, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C