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Gene C1orf88TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
157 supporting clones for gene C1orf88 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD384993 embryonic trophoblasts, made from WA01 stemcells .a 1 to 861 21 to 889       869/889
(97 %)
16 diff
(98.3 %id)
DC428228   .a 5 to 540 1 to 536   tiling clone,   536/536
(100 %)
0 diff
(100 %id)
BF674731 Prostate .a 272 to 1015 1 to 743 F14L G15W T16N C17M Q18S ...     743/896
(82 %)
37 diff
(95.9 %id)
TI_927044091   .a 280 to 1015 43 to 778 exact     736/1237
(59 %)
11 diff
(99.2 %id)
TI_927044094   .a 280 to 1015 42 to 777 exact     736/1239
(59 %)
11 diff
(99.2 %id)
TI_927044097   .a 280 to 1015 798 to 63 exact     736/1260
(58 %)
3 diff
(99.8 %id)
TI_927044100   .a 280 to 1015 800 to 65 exact     736/1241
(59 %)
3 diff
(99.8 %id)
TI_891528474   .a 281 to 1007 783 to 57 H105N   Submitted on the opposite strand 727/1262
(57 %)
3 diff
(99.8 %id)
TI_891528476   .a 281 to 1007 780 to 54 H105N   Submitted on the opposite strand 727/1244
(58 %)
3 diff
(99.8 %id)
TI_891528478   .a 281 to 1007 62 to 788 H105N   Submitted on the opposite strand 727/1262
(57 %)
9 diff
(99.3 %id)
TI_891528480   .a 281 to 1007 55 to 781 H105N   Submitted on the opposite strand 727/1236
(58 %)
9 diff
(99.3 %id)
TI_891529654   .a 281 to 1007 125 to 851 H105N   Submitted on the opposite strand 727/1197
(60 %)
9 diff
(99.3 %id)
BC101501 Lung, PCR rescued clones .a 285 to 1007 1 to 723 exact     723/723
(100 %)
1 diff
(99.9 %id)
BC093891 Lung, PCR rescued clones .a 286 to 1007 1 to 722 H105N     722/722
(100 %)
2 diff
(99.8 %id)
NM_181643.4   .a 286 to 2631 1 to 2346 exact RefSeq,   2346/2346
(100 %)
0 diff
(100 %id)
DB209881 trachea .a 319 to 835 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DB258350 uterus .a 325 to 887 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB208138 trachea .a 331 to 773 2 to 444   capped   443/443
(100 %)
0 diff
(100 %id)
AA125828 uterus .a 333 to 705 1 to 380       380/406
(93 %)
15 diff
(96.4 %id)
CN311968 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 334 to 1090 1 to 757 exact     757/757
(100 %)
2 diff
(99.8 %id)
FN079937 breast carcinoma .a 334 to 398 1 to 65       65/65
(100 %)
4 diff
(93.9 %id)
AA136749 uterus .a 334 to 785 1 to 457   fully sequenced,   457/457
(100 %)
9 diff
(98.1 %id)
DA361246 subthalamic nucleus .a 335 to 886 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DT220419 brain .a 335 to 1027 1 to 692 P29S M88V K97N     692/692
(100 %)
4 diff
(99.5 %id)
DA267316 caudate nucleus .a 336 to 894 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA369685 subthalamic nucleus .a 336 to 894 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA712718   .a 336 to 845 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
DA721600   .a 336 to 905 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB198237 trachea .a 336 to 917 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
AK074433 Human lung .a 338 to 2625 1 to 2291 K63R available from FLJ, AAA   2291/2291
(100 %)
10 diff
(99.6 %id)
DA016833 adrenal gland .a 339 to 894 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA041026 bladder .a 339 to 899 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA585297 lung .a 339 to 872 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA633189 Kidney .a 339 to 925 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA876339 Prostate .a 339 to 897 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB166995 kidney, tumor tissue .a 339 to 897 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB205436 trachea .a 339 to 912 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
AA021175 eye, retina .a 340 to 795 1 to 461       461/466
(98 %)
8 diff
(98.3 %id)
DA535250 heart .a 341 to 837 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
W37272 parathyroid gland, parathyroid tumor .a 341 to 786 1 to 447       447/447
(100 %)
3 diff
(99.4 %id)
DB207169 trachea .a 341 to 957 2 to 617 K97N R164E T165P L166* capped   616/616
(100 %)
2 diff
(99.7 %id)
DA305877 hippocampus .a 343 to 902 2 to 560   capped   561/559
(100 %)
1 diff
(99.9 %id)
BI544703 brain, hippocampus .a 344 to 1158 1 to 827 P142A F150L G151D S152L P153Q ... available from MGC,   827/892
(92 %)
30 diff
(96.7 %id)
DA583983 lung .a 347 to 893 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB206760 trachea .a 347 to 932 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
BC068603 Brain, hippocampus .a 349 to 2625 1 to 2277 exact tiling clone, available from MGC, AAA   2277/2277
(100 %)
3 diff
(99.9 %id)
TI_44001112   .a 349 to 1158 91 to 912 P142A F150L G151D S152L P153Q ...     822/977
(84 %)
33 diff
(96.7 %id)
DA144398 amygdala .a 350 to 925 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DB270626 uterus .a 350 to 923 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB468047 hippocampus .a 354 to 779 1 to 424       424/424
(100 %)
13 diff
(97.0 %id)
TI_57200683   .a 354 to 979 27 to 660 R20E K21E L22T P24S H25S ... AAA   634/822
(77 %)
23 diff
(97.3 %id)
DB212070 trachea .a 354 to 895 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
AA397951   .a 355 to 766 1 to 411   fully sequenced,   411/411
(100 %)
2 diff
(99.6 %id)
DB192647 ovary, tumor tissue .a 359 to 844 2 to 489   capped   488/488
(100 %)
2 diff
(99.6 %id)
DB193731 ovary, tumor tissue .a 359 to 680 2 to 323   capped   322/322
(100 %)
0 diff
(100 %id)
W16608 lung .a 362 to 783 1 to 413   fully sequenced,   413/413
(100 %)
6 diff
(98.6 %id)
BI821531 pooled brain, lung, testis .a 362 to 979 1 to 626 R20E K21E L22T P24S H25S ...     626/814
(76 %)
17 diff
(98.0 %id)
DA277193 corpus callosum .a 364 to 949 2 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
DB170710 kidney, tumor tissue .a 366 to 945 2 to 581 exact capped   580/580
(100 %)
1 diff
(99.9 %id)
DA290033 hippocampus .a 369 to 958 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DA688712   .a 369 to 911 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA745081   .a 369 to 950 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA751848   .a 369 to 949 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
N83402   .a 376 to 621 1 to 238       238/281
(84 %)
14 diff
(95.1 %id)
BC029237 Brain, adult medulla .a 384 to 1383 1 to 1000   available from MGC, AAA   1000/1000
(100 %)
1 diff
(99.9 %id)
BI830841 brain, medulla .a 384 to 1268 1 to 886   available from MGC,   886/886
(100 %)
7 diff
(99.3 %id)
TI_57177334   .a 384 to 1268 67 to 952       886/952
(93 %)
12 diff
(98.8 %id)
BI766131 pooled lung and spleen .a 388 to 1266 1 to 885       885/887
(99 %)
20 diff
(97.8 %id)
TI_57177914   .a 388 to 1266 69 to 953       885/955
(92 %)
24 diff
(97.5 %id)
TI_149288571   .a 435 to 1114 785 to 108   AAA   678/678
(100 %)
4 diff
(99.5 %id)
BM970409 lung .a 489 to 1114 643 to 19   AAA   625/625
(100 %)
1 diff
(99.9 %id)
BI753099 brain .a 525 to 1128 14 to 617   tiling clone,   604/617
(97 %)
6 diff
(99.1 %id)
TI_57217788   .a 525 to 1128 48 to 651       604/651
(92 %)
6 diff
(99.1 %id)
CD684098 normal nasopharynx .a 590 to 744 1 to 155       155/155
(100 %)
1 diff
(99.4 %id)
AA064797 pineal gland .a 610 to 851 1 to 208   fully sequenced,   208/208
(100 %)
6 diff
(97.2 %id)
TI_149299140   .a 622 to 1116 582 to 85   AAA   498/804
(61 %)
14 diff
(98.3 %id)
AI830073 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 633 to 1122 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
T94459 lung .a 645 to 895 1 to 252       252/252
(100 %)
2 diff
(99.3 %id)
AI332298 lung .a 650 to 1121 474 to 4       471/474
(99 %)
1 diff
(99.8 %id)
AI560620 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 686 to 1114 438 to 10       429/438
(97 %)
1 diff
(99.8 %id)
AI139130 heart .a 688 to 1117 433 to 4       430/433
(99 %)
0 diff
(100 %id)
AI623753 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 689 to 1128 447 to 8       440/447
(98 %)
0 diff
(100 %id)
DB535216 hippocampus .a 696 to 1122 1 to 428     Submitted on the opposite strand 428/428
(100 %)
4 diff
(99.1 %id)
AI041071   .a 696 to 1117 424 to 3       422/424
(99 %)
0 diff
(100 %id)
BI769469 pooled lung and spleen .a 701 to 1149 421 to 875       455/1027
(44 %)
19 diff
(98.2 %id)
TI_57182489   .a 701 to 1149 458 to 912       455/1064
(42 %)
19 diff
(98.3 %id)
AA725122 parathyroid gland, parathyroid tumor .a 703 to 1122 444 to 26   AAA   419/419
(100 %)
1 diff
(99.8 %id)
DA750434   .a 709 to 1284 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
N79571 lung .a 724 to 1122 407 to 1   fully sequenced,   407/407
(100 %)
7 diff
(98.3 %id)
AI003740 pineal gland .a 727 to 1131 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AA125829 uterus .a 727 to 1126 401 to 1       401/401
(100 %)
1 diff
(99.8 %id)
AA136618 uterus .a 727 to 1126 400 to 1   fully sequenced,   400/400
(100 %)
0 diff
(100 %id)
AA778599   .a 729 to 1115 394 to 8       387/394
(98 %)
0 diff
(100 %id)
BM975604 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 731 to 1116 404 to 19   AAA   386/389
(99 %)
2 diff
(99.5 %id)
AA846630 parathyroid gland, parathyroid tumor .a 732 to 1114 383 to 1       383/383
(100 %)
0 diff
(100 %id)
AA435770   .a 740 to 1102 363 to 1   fully sequenced,   363/363
(100 %)
0 diff
(100 %id)
AW205330   .a 774 to 1116 360 to 18   AAA   343/349
(98 %)
1 diff
(99.8 %id)
N53890 multiple sclerosis lesions .a 776 to 1046 1 to 272       272/272
(100 %)
2 diff
(99.3 %id)
AA065113 pineal gland .a 821 to 1122 303 to 1   fully sequenced,   303/303
(100 %)
0 diff
(100 %id)
AA843666 parathyroid gland, parathyroid tumor .a 872 to 1383 524 to 13   AAA   512/512
(100 %)
2 diff
(99.7 %id)
AA400783   .a 887 to 1116 230 to 1       230/230
(100 %)
1 diff
(99.6 %id)
AA393913   .a 905 to 972 1 to 68   fully sequenced,   68/68
(100 %)
0 diff
(100 %id)
BX116802   .a 907 to 1116 1 to 210   AAA   210/210
(100 %)
0 diff
(100 %id)
AA400936   .a 942 to 1116 193 to 19   fully sequenced, AAA   175/175
(100 %)
0 diff
(100 %id)
W33208 parathyroid gland, parathyroid tumor .a 965 to 1115 162 to 12   AAA   151/153
(98 %)
2 diff
(98.7 %id)
AI198934   .a 973 to 1388 419 to 4   tiling clone,   416/419
(99 %)
0 diff
(100 %id)
BX348825 Placenta Cot 25-normalized .a 1253 to 1986 1 to 740       740/1020
(72 %)
24 diff
(97.7 %id)
BX357765 Placenta Cot 25-normalized .a 1572 to 2604 1026 to 1       1026/1053
(97 %)
13 diff
(98.8 %id)
BU101856   .a 1609 to 2390 787 to 4       784/787
(99 %)
0 diff
(100 %id)
AI432183 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1701 to 2078 378 to 1       378/378
(100 %)
0 diff
(100 %id)
TI_149302933   .a 1785 to 2625 890 to 63   AAA   828/957
(86 %)
15 diff
(98.5 %id)
TI_149295379   .a 1820 to 2625 878 to 84   AAA   795/796
(99 %)
33 diff
(95.9 %id)
TI_149285637   .a 1921 to 2625 791 to 85   AAA   707/708
(99 %)
7 diff
(99.1 %id)
CA445115 lung, Metastatic Chondrosarcoma .a 1958 to 2625 685 to 19   AAA   667/667
(100 %)
2 diff
(99.8 %id)
TI_149306191   .a 1966 to 2625 748 to 89   tiling clone, AAA   660/985
(67 %)
0 diff
(100 %id)
BM981038 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1975 to 2625 668 to 19   AAA   650/650
(100 %)
4 diff
(99.4 %id)
BU686257 lung, Primary Lung Epithelial Cells .a 1979 to 2625 665 to 19   AAA   647/647
(100 %)
0 diff
(100 %id)
BM971535 lung .a 1987 to 2625 657 to 19   AAA   639/639
(100 %)
1 diff
(99.9 %id)
BF437282 Prostate .a 2112 to 2625 514 to 1       514/514
(100 %)
2 diff
(99.7 %id)
BU683589 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2114 to 2625 530 to 19   AAA   512/512
(100 %)
2 diff
(99.7 %id)
AW800012 uterus .a 2139 to 2307 186 to 18       169/186
(90 %)
9 diff
(95.2 %id)
AW169947 pooled .a 2142 to 2626 485 to 1       485/485
(100 %)
1 diff
(99.8 %id)
DB539908 hippocampus .a 2172 to 2630 1 to 457     Submitted on the opposite strand 457/458
(99 %)
4 diff
(99.2 %id)
BQ026902 Chondrosarcoma, Left Pelvis .a 2182 to 2631 468 to 19   AAA   450/450
(100 %)
11 diff
(97.6 %id)
DB519836 testis .a 2186 to 2625 1 to 440     Submitted on the opposite strand 440/440
(100 %)
2 diff
(99.6 %id)
AI922988 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2220 to 2625 427 to 22   AAA   406/406
(100 %)
4 diff
(99.1 %id)
AA021608 eye, retina .a 2222 to 2631 412 to 1   tiling clone,   412/412
(100 %)
3 diff
(99.3 %id)
AV724067 hypothalamus .a 2255 to 2626 372 to 1     Submitted on the opposite strand 372/613
(60 %)
6 diff
(99.1 %id)
AA913750 pooled .a 2384 to 2626 244 to 1       244/244
(100 %)
17 diff
(93.1 %id)
DC412315 kidney, tumor tissue .b 1 to 562 1 to 562 K64N tiling clone,   562/562
(100 %)
1 diff
(99.9 %id)
AK303897 trachea .b 4 to 1325 1 to 1322 exact     1322/1322
(100 %)
0 diff
(100 %id)
DC414284 trachea .b 4 to 587 1 to 584 exact     584/584
(100 %)
0 diff
(100 %id)
DC358592 lung .b 22 to 627 1 to 606 H72N     606/606
(100 %)
2 diff
(99.7 %id)
DC371438   .b 30 to 590 1 to 561 P108L     561/561
(100 %)
1 diff
(99.9 %id)
DC424639 placenta .b 30 to 693 1 to 664 exact     664/669
(99 %)
2 diff
(99.8 %id)
DA138493 alzheimer cortex .b 31 to 248 2 to 219   capped   218/218
(100 %)
0 diff
(100 %id)
TI_45236423   .b 39 to 678 67 to 716 C17V Q18S Q19T R20E K21E ... AAA   648/1359
(47 %)
34 diff
(97.5 %id)
DC338017 subthalamic nucleus .b 40 to 577 1 to 538 exact     538/538
(100 %)
1 diff
(99.9 %id)
CR609935 Placenta Cot 25-normalized .b 45 to 2197 1 to 2153 exact tiling clone,   2153/2153
(100 %)
0 diff
(100 %id)
BX357766 Placenta Cot 25-normalized .b 45 to 1118 1 to 1068 exact     1068/1068
(100 %)
15 diff
(98.6 %id)
CD692749 normal nasopharynx .b 47 to 684 23 to 660 F14L     638/660
(96 %)
10 diff
(98.5 %id)
BI517753 pooled colon, kidney, stomach .b 47 to 707 1 to 678 C17V Q18S Q19T R20E K21E ...     676/1293
(52 %)
30 diff
(97.7 %id)
DB471184 hippocampus .b 50 to 535 1 to 484 H44T R45E P47L C49V Y50I ...     484/484
(100 %)
4 diff
(99.2 %id)
CR742871   .b 52 to 708 1 to 657 exact     657/657
(100 %)
0 diff
(100 %id)
DC371369   .b 60 to 588 1 to 529       529/529
(100 %)
0 diff
(100 %id)
DC371266   .b 163 to 743 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BQ011363 placenta .b 185 to 715 549 to 19   AAA   531/531
(100 %)
1 diff
(99.9 %id)
BI518308 pooled colon, kidney, stomach .b 1615 to 2150 566 to 18       549/566
(96 %)
0 diff
(100 %id)
TI_45236424   .b 1615 to 2150 566 to 18       549/566
(96 %)
0 diff
(100 %id)
DC427413 placenta .b 1672 to 2221 551 to 2   tiling clone,   550/591
(93 %)
0 diff
(100 %id)
BG773538 testis .c 1 to 723 1 to 720 F14L G15E T16H C17V Q18N ...     720/720
(100 %)
10 diff
(98.7 %id)
BC050319 testis .c 6 to 3781 1 to 3776 N121D tiling clone, available from MGC, AAA   3776/3776
(100 %)
6 diff
(99.9 %id)
DB454402 testis .c 39 to 503 1 to 465       465/465
(100 %)
1 diff
(99.8 %id)
BI913792 brain .c 65 to 843 1 to 783   tiling clone,   783/787
(99 %)
28 diff
(96.5 %id)
TI_57241797   .c 80 to 843 45 to 813       769/817
(94 %)
24 diff
(97.1 %id)
TI_149305319   .c 1267 to 2191 40 to 948     Submitted on the opposite strand 909/1030
(88 %)
30 diff
(97.1 %id)
CB851164 lung, Primary Lung Epithelial Cells .c 1267 to 2082 1 to 814   tiling clone, Submitted on the opposite strand 814/814
(100 %)
11 diff
(98.7 %id)
Z42180 brain, total brain .d 1 to 247 5 to 251   tiling clone,   251/251
(100 %)
1 diff
(99.7 %id)
H07026 whole brain .d 1 to 554 4 to 566 E6X Q7A G8E Y9D G10M ... tiling clone,   566/569
(99 %)
21 diff
(96.4 %id)
H05475 whole brain .d 1692 to 2122 452 to 14   tiling clone, AAA   439/443
(99 %)
11 diff
(97.6 %id)
Z41614 brain, total brain .d 1913 to 2122 210 to 1       210/210
(100 %)
1 diff
(99.6 %id)
CR626500 Placenta Cot 25-normalized .e 1 to 679 1 to 679 exact tiling clone,   679/679
(100 %)
0 diff
(100 %id)
BX355617 Placenta Cot 25-normalized .e 1 to 679 1 to 679 exact     679/679
(100 %)
0 diff
(100 %id)
AK310801 trachea .f 1 to 939 1 to 939 exact tiling clone,   939/939
(100 %)
2 diff
(99.8 %id)
DB199377 trachea .f 2 to 500 2 to 500 exact capped   499/499
(100 %)
1 diff
(99.8 %id)
CD691147 normal nasopharynx Gene C1orf88, variant not shown         Suspected internal deletion, this clone was ignored    
CD698875 normal nasopharynx Gene C1orf88, variant not shown         Suspected internal deletion, this clone was ignored    
DB368915.
matches multiple genes
  Gene C1orf88, variant not shown       AAA Suspected internal deletion, this clone was ignored, also hits gene fyleybo    
DB368915.
matches multiple genes
  Gene fyleybo, variant not shown       AAA Suspected internal deletion, this clone was ignored, also hits gene fyleybo    
DA736438.
matches multiple genes
  Gene C1orf88, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene fyleybo    
DA736438.
matches multiple genes
  Gene fyleybo, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene fyleybo    
DA148120 amygdala Gene C1orf88, variant not shown       capped Suspected internal deletion, this clone was ignored    
AA719802 pineal gland Gene C1orf88, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C