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Gene C11orf93TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
54 supporting clones for gene C11orf93 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ893717 dorsal root ganglia .a 1 to 793 31 to 830   tiling clone,   800/977
(81 %)
18 diff
(98.2 %id)
AW603584 colon_normal .a 329 to 740 407 to 1       407/442
(92 %)
13 diff
(97.1 %id)
AW750612 colon_normal .a 329 to 740 413 to 1       413/444
(93 %)
4 diff
(99.1 %id)
BF817422 colon_ins .a 655 to 998 1 to 344   tiling clone,   344/344
(100 %)
1 diff
(99.8 %id)
BF811304 colon_ins .a 656 to 998 1 to 343       343/343
(100 %)
0 diff
(100 %id)
AW385279 leiomios .a 1033 to 1167 140 to 7   tiling clone,   134/142
(94 %)
4 diff
(97.2 %id)
DA253064 caudate nucleus .b 1 to 473 2 to 474   tiling clone, capped   473/473
(100 %)
0 diff
(100 %id)
DB238561 trachea .b 29 to 633 2 to 605   tiling clone, capped   604/604
(100 %)
2 diff
(99.7 %id)
BG703046 brain, hippocampus .b 447 to 1252 1 to 807   available from MGC,   807/808
(99 %)
15 diff
(98.2 %id)
BC042557 Brain, hippocampus .b 452 to 1781 1 to 1330   tiling clone, available from MGC, AAA   1330/1330
(100 %)
7 diff
(99.5 %id)
H91009 liver and spleen .b 940 to 1225 1 to 287       287/311
(92 %)
4 diff
(98.8 %id)
BM783917 Ascites, stomach .b 1048 to 1687 1 to 640   tiling clone,   640/640
(100 %)
1 diff
(99.9 %id)
CA314438 Human Lung Epithelial cells, lung .b 1058 to 1781 742 to 19   AAA   724/724
(100 %)
2 diff
(99.8 %id)
H16208 breast .b 1079 to 1475 1 to 412       412/450
(91 %)
22 diff
(95.2 %id)
TI_149300129   .b 1116 to 1781 728 to 77   AAA   652/773
(84 %)
18 diff
(97.7 %id)
AA812993   .b 1259 to 1780 525 to 4       522/525
(99 %)
0 diff
(100 %id)
BM976272 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1310 to 1781 490 to 19   AAA   472/472
(100 %)
2 diff
(99.6 %id)
TI_154002296   .b 1329 to 1781 562 to 110   tiling clone, AAA   453/454
(99 %)
1 diff
(99.8 %id)
CA433261 mixed .b 1349 to 1781 451 to 19   AAA   433/433
(100 %)
1 diff
(99.8 %id)
AI022649 liver and spleen .b 1350 to 1783 435 to 2       434/435
(99 %)
0 diff
(100 %id)
AI368842   .b 1353 to 1783 433 to 3       431/433
(99 %)
0 diff
(100 %id)
BX097858 adenocarcinoma, Pancreas .b 1378 to 1781 418 to 15   AAA   404/405
(99 %)
0 diff
(100 %id)
AI084815 liver and spleen .b 1383 to 1782 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AA931328 pooled .b 1385 to 1781 397 to 1       397/397
(100 %)
4 diff
(99.0 %id)
AI392998 B-cell, chronic lymphotic leukemia .b 1398 to 1783 387 to 2   tiling clone,   386/387
(99 %)
0 diff
(100 %id)
AI287567 placenta .b 1406 to 1783 379 to 2       378/379
(99 %)
0 diff
(100 %id)
CB050335 Prostate .b 1413 to 1783 408 to 38   AAA   371/386
(96 %)
0 diff
(100 %id)
AI493596 adenocarcinoma, Pancreas .b 1415 to 1783 372 to 4       369/372
(99 %)
0 diff
(100 %id)
AI278360 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1418 to 1783 369 to 4       366/369
(99 %)
0 diff
(100 %id)
H90897 liver and spleen .b 1519 to 1762 244 to 1       244/244
(100 %)
0 diff
(100 %id)
H16209 breast .b 1551 to 1782 235 to 1       235/239
(98 %)
4 diff
(98.4 %id)
AW418706 pooled .b 1592 to 1783 193 to 2       192/193
(99 %)
0 diff
(100 %id)
AK292195 colon, tumor tissue .c 1 to 1240 5 to 1244 A11V tiling clone,   1244/1244
(100 %)
3 diff
(99.8 %id)
NM_001136105.1   .c 1 to 1410 5 to 1414 exact RefSeq,   1414/1414
(100 %)
0 diff
(100 %id)
DB009304 colon, tumor tissue .c 1 to 551 5 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA307321 hippocampus .c 1 to 468 2 to 469   tiling clone, capped   468/468
(100 %)
0 diff
(100 %id)
BC110079 PCR rescued clones .c 529 to 1410 1 to 882 exact tiling clone,   882/882
(100 %)
1 diff
(99.9 %id)
AW751860 colon .c 720 to 956 237 to 1       237/253
(93 %)
9 diff
(96.5 %id)
AW751866 colon .c 723 to 885 165 to 3       163/165
(98 %)
4 diff
(97.6 %id)
AW375158 colon .c 725 to 1012 288 to 1       288/288
(100 %)
14 diff
(95.2 %id)
BE091901 breast .c 727 to 1045 317 to 1     Submitted on the opposite strand 317/329
(96 %)
2 diff
(99.4 %id)
BE091842 breast .c 729 to 1052 337 to 14     Submitted on the opposite strand 324/337
(96 %)
0 diff
(100 %id)
BE091843 breast .c 729 to 1052 338 to 15     Submitted on the opposite strand 324/338
(95 %)
0 diff
(100 %id)
BE091892 breast .c 729 to 1045 1 to 317       317/317
(100 %)
1 diff
(99.7 %id)
BE091964 breast .c 729 to 1052 343 to 20     Submitted on the opposite strand 324/343
(94 %)
0 diff
(100 %id)
BE091966 breast .c 729 to 1052 344 to 21     Submitted on the opposite strand 324/344
(94 %)
0 diff
(100 %id)
AW375190 colon .c 732 to 1047 1 to 315       315/315
(100 %)
2 diff
(99.4 %id)
AW375154 colon .c 752 to 1047 1 to 296       296/296
(100 %)
10 diff
(96.7 %id)
AW375161 colon .c 761 to 1059 1 to 302       302/303
(99 %)
15 diff
(95.1 %id)
AW751855 colon .c 773 to 1059 1 to 289       289/290
(99 %)
14 diff
(95.2 %id)
BM748015 Ascites, stomach .c 782 to 1217 1 to 436       436/436
(100 %)
2 diff
(99.6 %id)
BM784861 Ascites, stomach .c 782 to 1147 1 to 366       366/366
(100 %)
1 diff
(99.8 %id)
AW375149 colon .c 822 to 1047 1 to 228       228/228
(100 %)
13 diff
(94.3 %id)
DB335303 colon, tumor tissue .c 1019 to 1515 499 to 1   tiling clone,   499/499
(100 %)
4 diff
(99.2 %id)
DA329943 hippocampus .d-u 1 to 520 2 to 521 L20P tiling clone, capped   520/520
(100 %)
1 diff
(99.9 %id)
CA397933 eye, RPE/choroid Gene C11orf93, variant not shown       AAA This clone was ignored    
CA397934 eye, RPE/choroid Gene C11orf93, variant not shown         This clone was ignored    
AV752358 Pituitary Gene C11orf93, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC