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Gene CCDC101TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
141 supporting clones for gene CCDC101 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP281136 bone marrow .a 1 to 574 9 to 582   tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
BU599127 mixed (pool of 40 RNAs) .a 1 to 561 3 to 576       574/756
(75 %)
27 diff
(96.5 %id)
BG716643 brain, hypothalamus .a 1 to 755 8 to 753       746/872
(85 %)
12 diff
(98.7 %id)
BX353011 Neuroblastoma Cot 10-normalized .a 3 to 738 1 to 734       734/734
(100 %)
4 diff
(99.5 %id)
AA132818 colon, tumor .a 3 to 392 1 to 391       393/391
(100 %)
6 diff
(98.5 %id)
NM_138414.2   .a 3 to 1152 1 to 1150 exact RefSeq, AAA   1150/1150
(100 %)
0 diff
(100 %id)
AA132624 colon, tumor .a 4 to 387 1 to 385       387/388
(99 %)
9 diff
(97.7 %id)
AA036648 heart .a 5 to 515 1 to 517       467/518
(90 %)
15 diff
(97.2 %id)
AA039514 heart .a 5 to 167 1 to 163       163/163
(100 %)
0 diff
(100 %id)
BF666500 brain, primitive neuroectoderm .a 6 to 716 1 to 702       702/702
(100 %)
23 diff
(96.8 %id)
BF700150 brain, primitive neuroectoderm .a 6 to 586 1 to 586       586/586
(100 %)
11 diff
(98.2 %id)
BG329454 eye, retinoblastoma .a 7 to 755 1 to 742       742/901
(82 %)
19 diff
(97.9 %id)
BG472919 eye, retinoblastoma .a 7 to 645 1 to 638       638/638
(100 %)
5 diff
(99.3 %id)
CR991426 T-Lymphocytes .a 8 to 868 1 to 861       861/865
(99 %)
7 diff
(99.2 %id)
BC011981 Ovary, adenocarcinoma .a 11 to 1151 1 to 1140 exact tiling clone, available from MGC, AAA   1140/1140
(100 %)
1 diff
(100.0 %id)
BG253699 adenocarcinoma, cell line, Prostate .a 11 to 755 1 to 743       743/952
(78 %)
15 diff
(98.5 %id)
BF031680 hypernephroma, Kidney .a 19 to 675 1 to 644       648/651
(99 %)
22 diff
(96.7 %id)
TI_57147321   .a 22 to 799 63 to 840       778/948
(82 %)
12 diff
(98.8 %id)
TI_57167341   .a 24 to 799 39 to 821       783/846
(92 %)
18 diff
(97.9 %id)
BI761411 pooled colon, kidney, stomach .a 26 to 904 1 to 882       882/882
(100 %)
21 diff
(97.7 %id)
BU182386 melanotic melanoma, skin .a 26 to 858 1 to 842   tiling clone,   842/885
(95 %)
13 diff
(98.6 %id)
BP330688 rectum .a 26 to 612 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
AA340615 Kidney .a 27 to 277 1 to 251       251/255
(98 %)
1 diff
(99.7 %id)
BF527164 anaplastic oligodendroglioma with 1p/19qloss, brain .a 30 to 526 1 to 497       497/497
(100 %)
5 diff
(99.0 %id)
BU159754 eye, retinoblastoma .a 31 to 882 12 to 868       857/870
(98 %)
16 diff
(98.2 %id)
CX786650 human embryonic stem cells .a 31 to 836 1 to 806       806/806
(100 %)
0 diff
(100 %id)
BP245973 Kidney .a 32 to 610 10 to 588       579/579
(100 %)
1 diff
(99.9 %id)
BP247402 Kidney .a 32 to 605 9 to 582       574/574
(100 %)
1 diff
(99.9 %id)
BF036579 adenocarcinoma, ovary .a 32 to 657 1 to 640       640/1151
(55 %)
30 diff
(97.4 %id)
BI835247 pooled pancreas and spleen .a 32 to 799 9 to 783       775/800
(96 %)
18 diff
(97.8 %id)
CR997217 T-Lymphocytes .a 34 to 800 9 to 776       768/776
(98 %)
1 diff
(99.9 %id)
H30862 brain .a 40 to 475 1 to 440       440/478
(92 %)
10 diff
(98.0 %id)
AA160581 Pancreas .a 40 to 400 1 to 352       352/397
(88 %)
20 diff
(95.0 %id)
BU600680 mixed (pool of 40 RNAs) .a 40 to 714 1 to 680       678/856
(79 %)
7 diff
(99.2 %id)
H51159 brain .a 41 to 432 1 to 395       395/395
(100 %)
7 diff
(98.3 %id)
R84481 brain .a 41 to 404 1 to 365       365/439
(83 %)
6 diff
(98.7 %id)
AW402131 lymph .a 42 to 642 1 to 601       601/601
(100 %)
5 diff
(99.2 %id)
AK057008 skeletal muscle .a 44 to 1152 1 to 1109 I249N available from FLJ,   1109/1109
(100 %)
1 diff
(100.0 %id)
DA894328 skeletal muscle .a 45 to 558 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
CR998796 T-Lymphocytes .a 46 to 728 1 to 685       685/689
(99 %)
3 diff
(99.6 %id)
AA372352 colon .a 49 to 334 1 to 285       285/290
(98 %)
8 diff
(97.3 %id)
TI_154138393   .a 49 to 661 80 to 692       613/614
(99 %)
2 diff
(99.7 %id)
DB456566 testis .a 50 to 540 1 to 494       494/494
(100 %)
8 diff
(98.4 %id)
TI_57175593   .a 53 to 904 36 to 897       862/897
(96 %)
25 diff
(97.3 %id)
BG819570 anaplastic oligodendroglioma with 1p/19qloss, brain .a 54 to 901 5 to 856       850/861
(98 %)
22 diff
(97.5 %id)
BI831713 brain, medulla .a 61 to 793 1 to 736       736/854
(86 %)
7 diff
(99.2 %id)
TI_57165694   .a 63 to 869 29 to 837       809/906
(89 %)
9 diff
(99.1 %id)
BI837482 pooled pancreas and spleen .a 64 to 869 1 to 808       808/877
(92 %)
10 diff
(98.9 %id)
CA487938   .a 65 to 893 1 to 833       833/835
(99 %)
10 diff
(98.9 %id)
H18363 brain .a 69 to 475 1 to 415       415/471
(88 %)
14 diff
(97.1 %id)
BU170358 epithelioid carcinoma, Pancreas .a 69 to 701 1 to 643       643/826
(77 %)
13 diff
(98.5 %id)
DN997937 breast cancer, Mammary gland (cancer tissue) .a 87 to 722 8 to 642       635/642
(98 %)
0 diff
(100 %id)
CN311643 embryonic stem cells, DMSO-treated H9 cellline .a 94 to 593 1 to 500       500/500
(100 %)
0 diff
(100 %id)
TI_57174877   .a 102 to 858 62 to 819       758/820
(92 %)
2 diff
(99.8 %id)
BI827192 brain, medulla .a 107 to 858 1 to 753       753/754
(99 %)
2 diff
(99.8 %id)
AA437153   .a 110 to 580 1 to 468       468/468
(100 %)
5 diff
(99.0 %id)
BX281524 brain, medulla .a 111 to 647 1 to 537       537/537
(100 %)
0 diff
(100 %id)
CV023634 mixed .a 188 to 640 1 to 454       454/454
(100 %)
12 diff
(97.4 %id)
BE296336 muscle, rhabdomyosarcoma .a 284 to 952 1 to 664       664/700
(94 %)
8 diff
(98.9 %id)
BM817525 Ascites, stomach .a 324 to 629 1 to 306       306/306
(100 %)
0 diff
(100 %id)
BE787421 large cell carcinoma, lung .a 347 to 1062 1 to 700       700/866
(80 %)
21 diff
(97.6 %id)
BF982020 duodenal adenocarcinoma, cell line, small intestine .a 365 to 1094 1 to 722       722/993
(72 %)
14 diff
(98.6 %id)
BM708074 eye, RPE and Choroid .a 366 to 637 1 to 272   fully sequenced,   272/272
(100 %)
0 diff
(100 %id)
BQ002873 Chondrosarcoma, Left Pelvis .a 428 to 1152 743 to 19   AAA   725/725
(100 %)
1 diff
(99.9 %id)
BQ680590 melanotic melanoma, cell line, skin .a 430 to 1152 18 to 737   AAA   720/737
(97 %)
4 diff
(99.5 %id)
BU145241 melanotic melanoma, cell line, skin .a 433 to 1151 1 to 719   AAA   719/719
(100 %)
0 diff
(100 %id)
BQ678066 melanotic melanoma, cell line, skin .a 433 to 1129 1 to 707   AAA   707/730
(96 %)
20 diff
(97.3 %id)
BU168503 melanotic melanoma, cell line, skin .a 433 to 1151 1 to 719   AAA   719/719
(100 %)
1 diff
(99.9 %id)
BQ683488 melanotic melanoma, cell line, skin .a 433 to 1149 1 to 721       721/924
(78 %)
9 diff
(99.1 %id)
BF806861 colon_ins .a 460 to 896 1 to 437       437/437
(100 %)
6 diff
(98.7 %id)
BQ773513 Chondrosarcoma Cell line .a 462 to 1152 709 to 19   AAA   691/691
(100 %)
1 diff
(99.9 %id)
BQ637324 eye, retina .a 470 to 946 1 to 476       476/476
(100 %)
3 diff
(99.4 %id)
TI_149288335   .a 477 to 1151 785 to 117   AAA   669/962
(69 %)
44 diff
(95.5 %id)
BQ215015 melanotic melanoma, skin .a 521 to 1152 1 to 641       641/960
(66 %)
15 diff
(98.5 %id)
AW131527 brain, medulloblastoma .a 530 to 1143 614 to 1       614/614
(100 %)
4 diff
(99.4 %id)
BM694155 eye, RPE and Choroid .a 538 to 983 1 to 446   fully sequenced,   446/446
(100 %)
0 diff
(100 %id)
BU731928 eye, RPE and Choroid .a 576 to 1152 595 to 19   fully sequenced, AAA   577/577
(100 %)
0 diff
(100 %id)
CV424568 lung_tumor .a 590 to 1012 31 to 454       424/455
(93 %)
26 diff
(94.3 %id)
AA160496 Pancreas .a 603 to 1121 514 to 1       514/542
(94 %)
28 diff
(94.9 %id)
R41041   .a 640 to 938 1 to 295       295/295
(100 %)
13 diff
(95.6 %id)
AA683517 heart .a 645 to 1151 508 to 2       507/508
(99 %)
0 diff
(100 %id)
BE544663 cervical carcinoma cell line, cervix .a 650 to 1153 18 to 520       503/834
(60 %)
1 diff
(99.9 %id)
AA625340 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 662 to 1086 14 to 437       424/437
(97 %)
1 diff
(99.8 %id)
BQ026018 placenta .a 667 to 1152 503 to 18   AAA   486/486
(100 %)
2 diff
(99.6 %id)
AA383445 testis .a 681 to 901 1 to 222       222/222
(100 %)
1 diff
(99.6 %id)
DB521983 testis .a 685 to 1153 1 to 469     Submitted on the opposite strand 469/476
(98 %)
4 diff
(99.2 %id)
AA039515 heart .a 686 to 1151 490 to 19   AAA   472/476
(99 %)
13 diff
(97.3 %id)
DB330968 skeletal muscle .a 686 to 1152 467 to 1       467/467
(100 %)
2 diff
(99.6 %id)
AI422727 brain, glioblastoma (pooled) .a 692 to 1152 477 to 17   AAA   461/461
(100 %)
1 diff
(99.8 %id)
AA132314 colon, tumor .a 705 to 1152 457 to 11   AAA   447/447
(100 %)
1 diff
(99.8 %id)
BU188806 melanotic melanoma, skin .a 708 to 1153 1 to 446       446/446
(100 %)
0 diff
(100 %id)
AW167600 cervix .a 709 to 1128 422 to 1       422/422
(100 %)
13 diff
(97.0 %id)
AW150813 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 710 to 1151 443 to 2       420/443
(94 %)
36 diff
(91.9 %id)
CR980526 T-Lymphocytes .a 717 to 1152 1 to 436   AAA   436/436
(100 %)
1 diff
(99.8 %id)
AI349331 lung .a 728 to 1153 427 to 3       425/427
(99 %)
5 diff
(98.9 %id)
AA132506 colon, tumor .a 737 to 1152 426 to 11   AAA   416/416
(100 %)
0 diff
(100 %id)
AW934917 denis_drash .a 740 to 1117 396 to 7     Submitted on the opposite strand 390/396
(98 %)
3 diff
(99.3 %id)
AI560280 anaplastic oligodendroglioma, brain .a 754 to 1151 399 to 1       399/400
(99 %)
4 diff
(99.0 %id)
F23609 pectoral muscle (after mastectomy) .a 782 to 1074 1 to 293       293/294
(99 %)
2 diff
(99.4 %id)
BM695013 eye, human retina .a 782 to 1153 1 to 372   AAA   372/372
(100 %)
10 diff
(97.4 %id)
BM703056 eye, human retina .a 782 to 1152 1 to 371   AAA   371/371
(100 %)
0 diff
(100 %id)
AA079321   .a 783 to 1123 342 to 1       342/434
(78 %)
6 diff
(98.7 %id)
F36963 pectoral muscle (after mastectomy) .a 786 to 1138 1 to 353       353/353
(100 %)
0 diff
(100 %id)
AA447192   .a 792 to 1150 378 to 20       359/378
(94 %)
0 diff
(100 %id)
AI248437 liver and spleen .a 803 to 1152 383 to 34   AAA   350/350
(100 %)
4 diff
(98.9 %id)
AW139501   .a 813 to 1151 356 to 18   AAA   339/339
(100 %)
1 diff
(99.8 %id)
F34859 pectoral muscle (after mastectomy) .a 817 to 1137 1 to 321       321/321
(100 %)
0 diff
(100 %id)
AA302652 adipose tissue, white .a 822 to 1152 334 to 2       333/334
(99 %)
6 diff
(98.3 %id)
AI150188   .a 841 to 1152 346 to 35   AAA   312/312
(100 %)
10 diff
(96.8 %id)
AA426430   .a 842 to 1151 321 to 12   AAA   310/310
(100 %)
1 diff
(99.7 %id)
AW609601 stomach .a 845 to 1143 15 to 310       296/324
(91 %)
1 diff
(99.7 %id)
BF435434 pooled .a 845 to 1034 190 to 1       190/190
(100 %)
3 diff
(98.5 %id)
H18332 brain .a 853 to 1152 300 to 1       300/300
(100 %)
1 diff
(99.7 %id)
AI867663 Prostate .a 867 to 1151 285 to 2       284/286
(99 %)
1 diff
(99.7 %id)
AI186098 lung .a 884 to 1043 160 to 1       160/160
(100 %)
4 diff
(97.5 %id)
BU732331 eye, RPE and Choroid .a 922 to 1152 249 to 19   fully sequenced, AAA   231/231
(100 %)
0 diff
(100 %id)
C15563   .a 927 to 1151 1 to 225       225/225
(100 %)
0 diff
(100 %id)
T54977 fetal spleen, Spleen .a 986 to 1152 186 to 20   AAA   167/172
(97 %)
1 diff
(99.5 %id)
N73629 multiple sclerosis lesions .a 1023 to 1153 139 to 9       131/139
(94 %)
0 diff
(100 %id)
BX342481   .b 1 to 776 1 to 775   tiling clone, fully sequenced,   775/775
(100 %)
4 diff
(99.5 %id)
BX363635   .b 1 to 810 1 to 810   tiling clone, fully sequenced,   810/810
(100 %)
4 diff
(99.6 %id)
BX363634   .b 749 to 1646 911 to 13   tiling clone, fully sequenced,   899/911
(98 %)
0 diff
(100 %id)
BX342480   .b 750 to 1537 911 to 117   tiling clone, fully sequenced,   795/911
(87 %)
10 diff
(99.0 %id)
AW878572 ovary .b 934 to 1268 1 to 335   tiling clone,   335/345
(97 %)
8 diff
(97.7 %id)
AA336277 skin .b 1024 to 1187 163 to 1     Submitted on the opposite strand 163/175
(93 %)
1 diff
(99.5 %id)
TI_57184136   .b 1302 to 1690 27 to 414   AAA   388/725
(53 %)
6 diff
(99.2 %id)
BI770772 pooled lung and spleen .b 1311 to 1690 1 to 379   tiling clone, AAA   379/690
(54 %)
2 diff
(99.8 %id)
AA180300 brain, neuroepithelial cells .c 1 to 412 4 to 417   tiling clone,   417/417
(100 %)
9 diff
(97.9 %id)
BQ051748 blood, natural killer cells, cell line .c 44 to 946 1 to 909 exact tiling clone,   909/1029
(88 %)
15 diff
(98.6 %id)
AA180301 brain, neuroepithelial cells .c 648 to 1072 438 to 15   tiling clone, AAA   424/424
(100 %)
2 diff
(99.6 %id)
BE786949 large cell carcinoma, lung .d 1 to 768 1 to 748 L62S Y63T T64Q T65P A66Q ... tiling clone,   748/886
(84 %)
43 diff
(95.2 %id)
DN998325 breast cancer, Mammary gland (cancer tissue) .d 390 to 1016 8 to 635   tiling clone,   628/635
(98 %)
0 diff
(100 %id)
TI_57170120   .e 1 to 848 23 to 867 E16S L17S H18I Q19S L20* tiling clone,   845/868
(97 %)
14 diff
(98.4 %id)
BI825237 brain, medulla .e 7 to 848 1 to 839 E16S L17S H18I Q19S L20*     839/840
(99 %)
15 diff
(98.3 %id)
BF529245 anaplastic oligodendroglioma with 1p/19qloss, brain .e 23 to 735 1 to 709 E93R R94E R95A I96D A97C ...     709/712
(99 %)
26 diff
(96.4 %id)
CT002150 T-Lymphocytes .e 28 to 693 8 to 670 exact tiling clone,   663/664
(99 %)
4 diff
(99.4 %id)
TI_149291399   .e 405 to 1218 895 to 84   AAA   812/930
(87 %)
10 diff
(99.0 %id)
BM974021 lung .e 494 to 1218 744 to 19   tiling clone, AAA   726/726
(100 %)
1 diff
(99.9 %id)
BI032822 nervous_normal .f 1 to 188 34 to 226   tiling clone,   193/226
(85 %)
0 diff
(100 %id)
DB298300.
matches multiple genes
cerebellum .f 48 to 582 535 to 1 R6G tiling clone, also hits gene kuturi 535/535
(100 %)
1 diff
(99.9 %id)
DA931717 Spleen .g -9 to 540 2 to 551 exact capped   550/550
(100 %)
0 diff
(100 %id)
DA938584 Spleen .g 1 to 602 7 to 608 exact tiling clone, capped   607/607
(100 %)
0 diff
(100 %id)
CB989031 Human Placenta, placenta .g 1 to 732 29 to 765 exact tiling clone,   738/767
(96 %)
13 diff
(98.4 %id)
CF993765 Human Placenta, placenta .g 1 to 756 29 to 790 exact tiling clone,   763/844
(90 %)
11 diff
(98.7 %id)
BP225937   .h -10 to 571 1 to 580 S8R C10R G11F R13T R14C ...     580/580
(100 %)
1 diff
(99.9 %id)
DB278588 uterus .h 1 to 562 2 to 562 S8A V9C C10A G11V S12L ... tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
BI911159 leukocyte .h 3 to 753 1 to 750 S8A V9C C10A G11V S12L ... tiling clone,   750/750
(100 %)
7 diff
(99.1 %id)
TI_57235619   .h 3 to 753 28 to 777 S8A V9C C10A G11V S12L ...     750/777
(96 %)
4 diff
(99.5 %id)
DB185910 liver, tumor tissue .h 24 to 592 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BG992827 head_neck .h 324 to 581 1 to 262       262/262
(100 %)
5 diff
(98.1 %id)
BX093205   Gene CCDC101, variant not shown       AAA Suspected internal deletion, this clone was ignored    
R47291   Gene CCDC101, variant not shown         Suspected internal deletion, this clone was ignored    
AA421451   Gene CCDC101, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AA421482   Gene CCDC101, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI