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Gene KRTCAP3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
68 supporting clones for gene KRTCAP3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_927044774   .a 1 to 839 41 to 883   tiling clone,   840/1215
(69 %)
7 diff
(99.5 %id)
TI_927044780   .a 1 to 839 38 to 879       839/1233
(68 %)
6 diff
(99.6 %id)
TI_2194576084   .a 1 to 839 39 to 877   tiling clone,   839/1287
(65 %)
6 diff
(99.6 %id)
TI_2194576466   .a 1 to 839 907 to 69       839/1292
(64 %)
5 diff
(99.7 %id)
TI_2194578187   .a 1 to 839 39 to 877       839/1222
(68 %)
6 diff
(99.6 %id)
TI_2194578199   .a 1 to 839 907 to 69       839/1256
(66 %)
5 diff
(99.7 %id)
TI_927044781   .a 9 to 839 50 to 883       831/1223
(67 %)
7 diff
(99.5 %id)
BC143574 Lung, PCR rescued clones .a 10 to 839 1 to 830       830/830
(100 %)
0 diff
(100 %id)
TI_2194578193   .a 10 to 839 899 to 70       830/1269
(65 %)
0 diff
(100 %id)
TI_2194578181   .a 83 to 837 114 to 867       754/1211
(62 %)
7 diff
(99.5 %id)
TI_927044786   .b 1 to 842 904 to 62   tiling clone,   843/1247
(67 %)
6 diff
(99.6 %id)
TI_927044792   .b 1 to 842 903 to 62   tiling clone,   842/1237
(68 %)
5 diff
(99.6 %id)
BC101689 Lung, PCR rescued clones .b 9 to 834 1 to 826       826/826
(100 %)
0 diff
(100 %id)
TI_927044775   .b 9 to 842 49 to 883       835/1225
(68 %)
8 diff
(99.4 %id)
TI_927044787   .b 9 to 842 893 to 60       834/1244
(67 %)
0 diff
(100 %id)
TI_927044793   .b 9 to 842 892 to 59       834/1231
(67 %)
0 diff
(100 %id)
NM_173853.3   .b 9 to 894 1 to 886   RefSeq, AAA   886/886
(100 %)
0 diff
(100 %id)
BC101687 Lung, PCR rescued clones .b 10 to 834 1 to 825       825/825
(100 %)
0 diff
(100 %id)
AY157576   .b 39 to 894 1 to 856 A79T tiling clone, AAA   856/856
(100 %)
2 diff
(99.8 %id)
BQ631620 Pancreas, Purified pancreatic islet .b 71 to 555 1 to 484   fully sequenced,   486/486
(100 %)
11 diff
(97.8 %id)
BQ631342 Pancreas, Purified pancreatic islet .b 505 to 895 393 to 3   fully sequenced,   391/393
(99 %)
1 diff
(99.8 %id)
AI583153 adenocarcinoma, Pancreas .b 566 to 894 358 to 29   AAA   330/330
(100 %)
1 diff
(99.7 %id)
EC556652 Prostate .b 730 to 838 1 to 109       109/115
(94 %)
3 diff
(97.4 %id)
C00019   .b 734 to 894 1 to 161       161/161
(100 %)
0 diff
(100 %id)
EC562766 Prostate .b 799 to 895 1 to 97       97/98
(98 %)
6 diff
(93.9 %id)
AA627648 colon, colon tumor RER+ .b 803 to 893 91 to 1       91/91
(100 %)
0 diff
(100 %id)
NM_001168364.1   .c 1 to 956 1 to 956   RefSeq,   956/956
(100 %)
0 diff
(100 %id)
BM772636 Ascites, stomach .c 16 to 631 1 to 616   tiling clone,   616/616
(100 %)
0 diff
(100 %id)
EC540381 Prostate .c 50 to 144 1 to 95       95/95
(100 %)
2 diff
(97.9 %id)
BM820787 Ascites, stomach .c 64 to 583 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
AJ403111 colon, larynx epithelium .c 122 to 462 1 to 341       341/341
(100 %)
1 diff
(99.8 %id)
EC508121 Prostate .c 183 to 284 1 to 101       101/104
(97 %)
3 diff
(97.2 %id)
BQ361810 ovary .c 232 to 365 21 to 149       129/151
(85 %)
14 diff
(90.8 %id)
AW878960 ovary .c 233 to 372 161 to 23       139/161
(86 %)
0 diff
(100 %id)
FN145755 breast carcinoma .c 317 to 378 1 to 62       62/63
(98 %)
3 diff
(95.3 %id)
EC536467 Prostate .c 358 to 453 1 to 96       96/96
(100 %)
0 diff
(100 %id)
CB160871 Liver .c 467 to 954 516 to 29   tiling clone, AAA Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
CD700710 normal nasopharynx .c 484 to 636 24 to 176       153/176
(86 %)
7 diff
(96.1 %id)
EC461584 Prostate .c 534 to 609 76 to 1       76/90
(84 %)
0 diff
(100 %id)
EC468915 Prostate .c 534 to 609 76 to 1       76/90
(84 %)
0 diff
(100 %id)
EC469731 Prostate .c 534 to 609 76 to 1       76/90
(84 %)
0 diff
(100 %id)
EC527305 Prostate .c 534 to 608 75 to 1       75/89
(84 %)
0 diff
(100 %id)
BM794111 Ascites, stomach .c 582 to 954 1 to 374       374/374
(100 %)
7 diff
(98.2 %id)
AY358993   .d 1 to 941 1 to 941 exact tiling clone, AAA   941/941
(100 %)
1 diff
(99.9 %id)
BM841239 myeloma .d 14 to 430 1 to 414   tiling clone,   414/414
(100 %)
1 diff
(99.8 %id)
W93943 heart .d 383 to 942 562 to 1       562/562
(100 %)
2 diff
(99.7 %id)
BF680458 Prostate .d 439 to 940 1 to 500       500/541
(92 %)
3 diff
(99.5 %id)
AW294768   .d 486 to 941 472 to 18   AAA   455/455
(100 %)
1 diff
(99.8 %id)
AA484181 Kidney .d 568 to 942 38 to 411       374/419
(89 %)
8 diff
(98.1 %id)
CA489633   .e 1 to 724 1 to 724 exact tiling clone,   724/744
(97 %)
2 diff
(99.8 %id)
AA531276 normal prostate, Prostate .e 223 to 724 504 to 6   tiling clone,   499/505
(98 %)
4 diff
(99.3 %id)
AI831051 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 275 to 724 457 to 8       450/457
(98 %)
1 diff
(99.8 %id)
CK903625 Islets of Langerhans, Pancreas .e 284 to 723 455 to 16   AAA   440/440
(100 %)
5 diff
(98.9 %id)
AA552438 colon, tumor .e 289 to 723 457 to 23   AAA   435/435
(100 %)
0 diff
(100 %id)
CK903626 Islets of Langerhans, Pancreas .e 296 to 723 1 to 428   AAA   428/428
(100 %)
0 diff
(100 %id)
BI963029 Islets of Langerhans, Pancreas .e 312 to 724 1 to 413       413/413
(100 %)
0 diff
(100 %id)
AW273371 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 324 to 724 401 to 1       401/401
(100 %)
0 diff
(100 %id)
BI966835 Islets of Langerhans, Pancreas .e 342 to 723 397 to 16   AAA   382/382
(100 %)
0 diff
(100 %id)
AI609617 normal gingiva (cell line from immortalizedkeratinocytes) .f 1 to 494 498 to 6 E22Q tiling clone,   493/509
(96 %)
1 diff
(99.9 %id)
AW452730   .f 252 to 499 265 to 18   tiling clone, AAA   248/257
(96 %)
1 diff
(99.7 %id)
AW130295 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g-u 1 to 420 421 to 1   tiling clone,   421/421
(100 %)
3 diff
(99.3 %id)
BF872746 lung_tumor .g-u 376 to 742 376 to 8     Submitted on the opposite strand 369/378
(97 %)
0 diff
(100 %id)
CV382959 lung_tumor .g-u 386 to 555 211 to 41     Submitted on the opposite strand 171/211
(81 %)
0 diff
(100 %id)
TI_149279424   .g-u 388 to 838 540 to 90 L17R E19R L20T L22S G23R ... AAA   451/701
(64 %)
6 diff
(99.2 %id)
TI_159714486   .g-u 388 to 838 544 to 94 exact AAA   451/1041
(43 %)
1 diff
(100.0 %id)
CB306970 Human Lung Epithelial cells, lung .g-u 388 to 838 469 to 19 exact tiling clone, AAA   451/504
(89 %)
1 diff
(99.9 %id)
BG546999 lung .h 1 to 637 1 to 638 A23V W140R tiling clone,   638/839
(76 %)
10 diff
(98.9 %id)
AW242887 Kidney .i-u 1 to 478 483 to 1 K42E P44S G45R R46K H47Q ... tiling clone,   483/483
(100 %)
10 diff
(98.0 %id)
AI581992 colon .i-u 130 to 488 364 to 1   tiling clone,   364/364
(100 %)
10 diff
(97.3 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C