| cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
| DA433474 | tongue, tumor tissue | .a | 1 to 760 | 2 to 762 | tiling clone, capped | 761/764 (99 %) | 15 diff (98.1 %id) | ||
| DB012197 | esophageal, tumor tissue | .a | 13 to 579 | 2 to 568 | capped | 567/567 (100 %) | 1 diff (99.9 %id) | ||
| DA448299 | tongue, tumor tissue | .a | 14 to 501 | 2 to 489 | capped | 488/488 (100 %) | 0 diff (100 %id) | ||
| DB013346 | esophageal, tumor tissue | .a | 43 to 608 | 2 to 567 | capped | 566/566 (100 %) | 1 diff (99.9 %id) | ||
| DA438145 | tongue, tumor tissue | .a | 44 to 621 | 2 to 579 | capped | 578/578 (100 %) | 2 diff (99.7 %id) | ||
| DB011741 | esophageal, tumor tissue | .a | 48 to 609 | 2 to 563 | capped | 562/562 (100 %) | 1 diff (99.9 %id) | ||
| DA433524 | tongue, tumor tissue | .a | 53 to 569 | 2 to 518 | capped | 517/517 (100 %) | 0 diff (100 %id) | ||
| DA443893 | tongue, tumor tissue | .a | 53 to 631 | 2 to 580 | capped | 579/579 (100 %) | 1 diff (99.9 %id) | ||
| DA449040 | tongue, tumor tissue | .a | 53 to 589 | 2 to 538 | capped | 537/537 (100 %) | 2 diff (99.7 %id) | ||
| DA450500 | tongue, tumor tissue | .a | 53 to 278 | 2 to 228 | capped | 227/227 (100 %) | 2 diff (99.2 %id) | ||
| AU122320 | mammary gland | .a | 53 to 790 | 2 to 744 | capped | 743/747 (99 %) | 17 diff (97.8 %id) | ||
| DA668922 | esophagus | .a | 53 to 550 | 2 to 499 | capped | 498/498 (100 %) | 1 diff (99.8 %id) | ||
| DA448309 | tongue, tumor tissue | .a | 55 to 608 | 2 to 555 | capped | 554/554 (100 %) | 2 diff (99.7 %id) | ||
| DA668122 | esophagus | .a | 55 to 389 | 2 to 336 | capped | 335/335 (100 %) | 0 diff (100 %id) | ||
| DA761319 | tongue | .a | 55 to 555 | 2 to 502 | capped | 501/501 (100 %) | 0 diff (100 %id) | ||
| DA667813 | esophagus | .a | 82 to 621 | 2 to 541 | capped | 540/540 (100 %) | 0 diff (100 %id) | ||
| DA667875 | esophagus | .a | 82 to 625 | 2 to 545 | capped | 544/544 (100 %) | 0 diff (100 %id) | ||
| DB012375 | esophageal, tumor tissue | .a | 84 to 621 | 2 to 539 | capped | 538/538 (100 %) | 1 diff (99.9 %id) | ||
| DA441691 | tongue, tumor tissue | .a | 85 to 582 | 2 to 499 | capped | 498/498 (100 %) | 4 diff (99.2 %id) | ||
| DA444193 | tongue, tumor tissue | .a | 85 to 656 | 2 to 573 | capped | 572/572 (100 %) | 0 diff (100 %id) | ||
| DA447559 | tongue, tumor tissue | .a | 85 to 655 | 2 to 572 | capped | 571/571 (100 %) | 0 diff (100 %id) | ||
| DA449849 | tongue, tumor tissue | .a | 85 to 636 | 2 to 555 | capped | 554/554 (100 %) | 4 diff (99.3 %id) | ||
| DA451143 | tongue, tumor tissue | .a | 85 to 640 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
| AU122418 | mammary gland | .a | 85 to 719 | 2 to 636 | capped | 635/635 (100 %) | 1 diff (99.9 %id) | ||
| DB011733 | esophageal, tumor tissue | .a | 85 to 640 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
| DB013430 | esophageal, tumor tissue | .a | 85 to 673 | 2 to 590 | capped | 589/589 (100 %) | 1 diff (99.9 %id) | ||
| DB013475 | esophageal, tumor tissue | .a | 85 to 653 | 2 to 570 | capped | 569/569 (100 %) | 0 diff (100 %id) | ||
| DB014081 | esophageal, tumor tissue | .a | 85 to 652 | 2 to 569 | capped | 568/568 (100 %) | 4 diff (99.3 %id) | ||
| DB014196 | esophageal, tumor tissue | .a | 85 to 582 | 2 to 499 | capped | 498/498 (100 %) | 2 diff (99.6 %id) | ||
| DB014275 | esophageal, tumor tissue | .a | 85 to 621 | 2 to 538 | capped | 537/537 (100 %) | 1 diff (99.9 %id) | ||
| DB014426 | esophageal, tumor tissue | .a | 85 to 594 | 2 to 511 | capped | 510/510 (100 %) | 0 diff (100 %id) | ||
| DB014760 | esophageal, tumor tissue | .a | 85 to 663 | 2 to 580 | capped | 579/579 (100 %) | 1 diff (99.9 %id) | ||
| DB014934 | esophageal, tumor tissue | .a | 85 to 582 | 2 to 499 | capped | 498/498 (100 %) | 1 diff (99.8 %id) | ||
| DB015294 | esophageal, tumor tissue | .a | 85 to 555 | 2 to 473 | capped | 472/472 (100 %) | 2 diff (99.6 %id) | ||
| DB015619 | esophageal, tumor tissue | .a | 85 to 561 | 2 to 478 | capped | 477/477 (100 %) | 0 diff (100 %id) | ||
| DB017042 | esophageal, tumor tissue | .a | 85 to 655 | 2 to 572 | capped | 571/571 (100 %) | 0 diff (100 %id) | ||
| DB017061 | esophageal, tumor tissue | .a | 85 to 398 | 2 to 315 | capped | 314/314 (100 %) | 1 diff (99.7 %id) | ||
| DB018403 | esophageal, tumor tissue | .a | 85 to 644 | 2 to 561 | capped | 560/560 (100 %) | 1 diff (99.9 %id) | ||
| DB014707 | esophageal, tumor tissue | .a | 87 to 655 | 2 to 572 | capped | 571/571 (100 %) | 3 diff (99.5 %id) | ||
| DA442916 | tongue, tumor tissue | .a | 88 to 640 | 2 to 554 | capped | 553/553 (100 %) | 1 diff (99.9 %id) | ||
| DB046917 | testis | .a | 88 to 640 | 2 to 554 | capped | 553/553 (100 %) | 1 diff (99.9 %id) | ||
| BE932624. matches multiple genes | head_neck | .a | 92 to 245 | 156 to 6 | also hits gene KRT6AandKRT6C | 151/156 (96 %) | 0 diff (100 %id) | ||
| BF088609 | head_neck | .a | 92 to 232 | 142 to 2 | 141/142 (99 %) | 0 diff (100 %id) | |||
| BF088687 | head_neck | .a | 92 to 232 | 142 to 2 | 141/142 (99 %) | 0 diff (100 %id) | |||
| BF356168 | head_neck | .a | 92 to 357 | 266 to 2 | 265/266 (99 %) | 0 diff (100 %id) | |||
| BG678622 | skin, squamous cell carcinoma | .a | 96 to 871 | 1 to 799 | 799/801 (99 %) | 58 diff (92.8 %id) | |||
| BM809989 | astrocytoma grade IV, cell line, brain | .a | 97 to 601 | 26 to 530 | 505/1176 (42 %) | 17 diff (98.6 %id) | |||
| DA451017 | tongue, tumor tissue | .a | 100 to 669 | 2 to 572 | capped | 571/571 (100 %) | 4 diff (99.3 %id) | ||
| BM910318 | astrocytoma grade IV, cell line, brain | .a | 102 to 499 | 10 to 407 | 398/1202 (33 %) | 2 diff (99.9 %id) | |||
| BG675776 | skin, squamous cell carcinoma | .a | 104 to 694 | 1 to 587 | 587/862 (68 %) | 18 diff (98.0 %id) | |||
| NM_005555.3 | .a | 104 to 2383 | 1 to 2280 | exact | RefSeq, AAA | 2280/2280 (100 %) | 0 diff (100 %id) | ||
| BG676120 | skin, squamous cell carcinoma | .a | 105 to 902 | 1 to 806 | 806/814 (99 %) | 17 diff (98.0 %id) | |||
| BG679268 | skin, squamous cell carcinoma | .a | 109 to 903 | 1 to 803 | 803/926 (86 %) | 12 diff (98.8 %id) | |||
| BM017399 | astrocytoma grade IV, cell line, brain | .a | 115 to 766 | 1 to 661 | 661/813 (81 %) | 31 diff (96.2 %id) | |||
| L42612 | .a | 115 to 1954 | 1 to 1840 | exact | tiling clone, | 1840/1840 (100 %) | 5 diff (99.8 %id) | ||
| TI_59387651 | .a | 116 to 766 | 101 to 760 | 660/812 (81 %) | 30 diff (96.4 %id) | ||||
| TI_59390877 | .a | 117 to 778 | 104 to 765 | 662/662 (100 %) | 10 diff (98.5 %id) | ||||
| BM913726 | astrocytoma grade IV, cell line, brain | .a | 118 to 451 | 1 to 334 | 334/1213 (27 %) | 10 diff (99.2 %id) | |||
| DA446098 | tongue, tumor tissue | .a | 120 to 660 | 2 to 544 | capped | 543/547 (99 %) | 4 diff (99.3 %id) | ||
| BG679505 | skin, squamous cell carcinoma | .a | 134 to 914 | 1 to 793 | 793/829 (95 %) | 21 diff (97.5 %id) | |||
| TI_59387380. matches multiple genes | .a | 139 to 694 | 97 to 663 | also hits gene KRT6AandKRT6C | 567/901 (62 %) | 35 diff (96.2 %id) | |||
| BE718354 | head_neck | .a | 144 to 459 | 1 to 316 | 316/316 (100 %) | 0 diff (100 %id) | |||
| TI_1948080998 | .a | 151 to 969 | 127 to 944 | fully sequenced, | 818/944 (86 %) | 9 diff (99.1 %id) | |||
| TI_1948081173 | .a | 151 to 906 | 128 to 887 | 760/1223 (62 %) | 16 diff (98.7 %id) | ||||
| TI_1948081526 | .a | 151 to 945 | 130 to 924 | 795/1273 (62 %) | 19 diff (98.6 %id) | ||||
| AW860699 | colon | .a | 279 to 632 | 1 to 353 | 353/353 (100 %) | 2 diff (99.5 %id) | |||
| BG945769. matches multiple genes | bladder_tumor | .a | 357 to 596 | 247 to 10 | also hits gene KRT6AandKRT6C | 238/247 (96 %) | 0 diff (100 %id) | ||
| BF155587 | head_neck | .a | 549 to 640 | 2 to 92 | 91/104 (87 %) | 4 diff (96.2 %id) | |||
| CV405449 | head_neck | .a | 571 to 845 | 345 to 67 | Submitted on the opposite strand | 279/345 (80 %) | 7 diff (98.0 %id) | ||
| BQ348315 | head_neck | .a | 700 to 1117 | 425 to 8 | 418/425 (98 %) | 1 diff (99.8 %id) | |||
| BG698174 | skin | .a | 745 to 1570 | 1 to 837 | 837/906 (92 %) | 27 diff (97.1 %id) | |||
| BQ349872 | head_neck | .a | 771 to 1135 | 375 to 12 | 364/392 (92 %) | 0 diff (100 %id) | |||
| CV315021. matches multiple genes | head_neck | .a | 777 to 1156 | 1 to 387 | also hits gene KRT6AandKRT6C | 387/387 (100 %) | 25 diff (93.6 %id) | ||
| CV315213. matches multiple genes | head_neck | .a | 777 to 1156 | 1 to 387 | also hits gene KRT6AandKRT6C | 387/387 (100 %) | 25 diff (93.6 %id) | ||
| BI335818 | skin | .a | 800 to 1220 | 1 to 421 | 421/421 (100 %) | 0 diff (100 %id) | |||
| BF149190 | skin | .a | 801 to 1133 | 1 to 333 | 333/333 (100 %) | 2 diff (99.4 %id) | |||
| BF149428 | skin | .a | 801 to 1133 | 1 to 333 | 333/333 (100 %) | 2 diff (99.4 %id) | |||
| CV314780. matches multiple genes | head_neck | .a | 810 to 1124 | 350 to 35 | Submitted on the opposite strand, also hits gene KRT6AandKRT6C | 316/350 (90 %) | 20 diff (94.3 %id) | ||
| BQ351425. matches multiple genes | head_neck | .a | 865 to 1082 | 218 to 1 | also hits gene KRT6AandKRT6C | 218/231 (94 %) | 2 diff (99.2 %id) | ||
| BQ348028 | head_neck | .a | 870 to 1089 | 1 to 218 | 218/218 (100 %) | 4 diff (98.2 %id) | |||
| BQ357614 | head_neck | .a | 870 to 1466 | 1 to 597 | 597/600 (99 %) | 9 diff (98.5 %id) | |||
| CV375090 | bladder_tumor | .a | 909 to 1194 | 39 to 323 | 283/323 (87 %) | 7 diff (97.9 %id) | |||
| AI540872 | Tissue culture | .a | 925 to 1323 | 15 to 414 | 400/871 (45 %) | 9 diff (99.0 %id) | |||
| BG677892 | skin, squamous cell carcinoma | .a | 929 to 1745 | 1 to 821 | 821/956 (85 %) | 15 diff (98.5 %id) | |||
| BQ354200. matches multiple genes | head_neck | .a | 931 to 1156 | 228 to 3 | also hits gene KRT6AandKRT6C | 226/228 (99 %) | 1 diff (99.6 %id) | ||
| CV318819 | head_neck | .a | 934 to 1311 | 1 to 379 | 377/379 (99 %) | 10 diff (97.4 %id) | |||
| TI_1948080999 | .a | 937 to 1852 | 1039 to 122 | fully sequenced, | 918/1039 (88 %) | 11 diff (99.0 %id) | |||
| TI_1948081174 | .a | 966 to 1852 | 1006 to 120 | 887/1265 (70 %) | 11 diff (99.2 %id) | ||||
| TI_1948081527 | .a | 969 to 1852 | 1002 to 119 | 884/1279 (69 %) | 12 diff (99.1 %id) | ||||
| AW381683. matches multiple genes | head_neck | .a | 974 to 1160 | 34 to 221 | also hits gene KRT6AandKRT6C | 188/224 (83 %) | 11 diff (95.1 %id) | ||
| BQ348324. matches multiple genes | head_neck | .a | 974 to 1160 | 14 to 200 | also hits gene KRT6AandKRT6C | 187/203 (92 %) | 11 diff (94.6 %id) | ||
| BG677272 | skin, squamous cell carcinoma | .a | 1002 to 1548 | 1 to 547 | 547/547 (100 %) | 0 diff (100 %id) | |||
| BG679916 | skin, squamous cell carcinoma | .a | 1012 to 1809 | 1 to 798 | 798/803 (99 %) | 6 diff (99.3 %id) | |||
| BF831750. matches multiple genes | head_neck | .a | 1016 to 1227 | 1 to 218 | also hits gene KRT6AandKRT6C | 218/247 (88 %) | 19 diff (92.4 %id) | ||
| BQ351659 | head_neck | .a | 1018 to 1280 | 2 to 264 | 263/264 (99 %) | 9 diff (96.6 %id) | |||
| CV396843 | head_neck | .a | 1032 to 1343 | 1 to 312 | 312/312 (100 %) | 6 diff (98.1 %id) | |||
| CV396845 | head_neck | .a | 1036 to 1343 | 7 to 314 | 308/314 (98 %) | 6 diff (98.1 %id) | |||
| BE714856. matches multiple genes | head_neck | .a | 1042 to 1280 | 14 to 251 | also hits gene KRT6AandKRT6C | 238/251 (94 %) | 6 diff (97.7 %id) | ||
| BG682406 | skin, squamous cell carcinoma | .a | 1044 to 1860 | 1 to 829 | 829/884 (93 %) | 22 diff (97.6 %id) | |||
| BG677378 | skin, squamous cell carcinoma | .a | 1059 to 1650 | 15 to 604 | 597/607 (98 %) | 7 diff (98.9 %id) | |||
| BG676346 | skin, squamous cell carcinoma | .a | 1062 to 1975 | 1 to 913 | 913/927 (98 %) | 30 diff (96.8 %id) | |||
| BG677131 | skin, squamous cell carcinoma | .a | 1062 to 1940 | 1 to 894 | 894/894 (100 %) | 40 diff (95.6 %id) | |||
| BG678706 | skin, squamous cell carcinoma | .a | 1084 to 1930 | 1 to 848 | 848/848 (100 %) | 2 diff (99.8 %id) | |||
| BG677884 | skin, squamous cell carcinoma | .a | 1117 to 1998 | 1 to 886 | 886/887 (99 %) | 19 diff (97.9 %id) | |||
| CV360854 | head_neck | .a | 1119 to 1646 | 1 to 528 | 528/528 (100 %) | 9 diff (98.3 %id) | |||
| BG677840 | skin, squamous cell carcinoma | .a | 1120 to 1898 | 1 to 779 | 779/779 (100 %) | 9 diff (98.9 %id) | |||
| BG676755 | skin, squamous cell carcinoma | .a | 1136 to 1937 | 1 to 808 | 808/810 (99 %) | 20 diff (97.6 %id) | |||
| BG680367 | skin, squamous cell carcinoma | .a | 1136 to 1715 | 1 to 580 | 580/580 (100 %) | 2 diff (99.7 %id) | |||
| BG679785 | skin, squamous cell carcinoma | .a | 1138 to 2059 | 1 to 933 | 933/936 (99 %) | 29 diff (97.0 %id) | |||
| BG678300 | skin, squamous cell carcinoma | .a | 1141 to 2106 | 1 to 963 | 963/974 (98 %) | 40 diff (95.9 %id) | |||
| BF357093 | head_neck | .a | 1145 to 1348 | 216 to 17 | 200/216 (92 %) | 0 diff (100 %id) | |||
| BG681900 | skin, squamous cell carcinoma | .a | 1145 to 1913 | 1 to 768 | 768/768 (100 %) | 3 diff (99.7 %id) | |||
| BF834355. matches multiple genes | head_neck | .a | 1152 to 1320 | 11 to 179 | also hits gene KRT6AandKRT6C | 169/179 (94 %) | 9 diff (95.0 %id) | ||
| BG676569 | skin, squamous cell carcinoma | .a | 1175 to 2108 | 1 to 939 | 939/944 (99 %) | 13 diff (98.7 %id) | |||
| BE182884. matches multiple genes | head_neck | .a | 1176 to 1295 | 2 to 121 | also hits gene KRT6AandKRT6C | 120/121 (99 %) | 10 diff (91.8 %id) | ||
| BG681573 | skin, squamous cell carcinoma | .a | 1185 to 2065 | 1 to 878 | 878/878 (100 %) | 12 diff (98.7 %id) | |||
| BG681287 | skin, squamous cell carcinoma | .a | 1198 to 1954 | 1 to 758 | 758/758 (100 %) | 6 diff (99.3 %id) | |||
| CV353114 | bladder_tumor | .a | 1227 to 1797 | 22 to 591 | 572/591 (96 %) | 9 diff (98.5 %id) | |||
| CV379503 | bladder_tumor | .a | 1228 to 1818 | 1 to 590 | 590/590 (100 %) | 11 diff (98.2 %id) | |||
| BG681728 | skin, squamous cell carcinoma | .a | 1233 to 2064 | 1 to 834 | 834/834 (100 %) | 19 diff (97.8 %id) | |||
| CV316046 | nervous_tumor | .a | 1235 to 1622 | 1 to 387 | 387/387 (100 %) | 8 diff (98.0 %id) | |||
| CV316053 | nervous_tumor | .a | 1235 to 1622 | 1 to 387 | 387/387 (100 %) | 8 diff (98.0 %id) | |||
| BG678751 | skin, squamous cell carcinoma | .a | 1243 to 2043 | 1 to 799 | 799/800 (99 %) | 12 diff (98.5 %id) | |||
| BG676467 | skin, squamous cell carcinoma | .a | 1271 to 2070 | 1 to 803 | 803/855 (93 %) | 6 diff (99.3 %id) | |||
| CU454721 | epidermis | .a | 1273 to 1878 | 609 to 5 | Submitted on the opposite strand | 605/609 (99 %) | 0 diff (100 %id) | ||
| BG874528 | breast_normal | .a | 1284 to 1811 | 19 to 545 | 527/545 (96 %) | 8 diff (98.6 %id) | |||
| BG676089 | skin, squamous cell carcinoma | .a | 1296 to 1994 | 1 to 701 | 701/701 (100 %) | 2 diff (99.8 %id) | |||
| BG682141 | skin, squamous cell carcinoma | .a | 1296 to 2018 | 1 to 724 | 724/867 (83 %) | 10 diff (98.9 %id) | |||
| BG678630 | skin, squamous cell carcinoma | .a | 1297 to 2161 | 1 to 867 | 867/867 (100 %) | 21 diff (97.6 %id) | |||
| BG682651 | skin, squamous cell carcinoma | .a | 1300 to 2108 | 11 to 818 | 808/818 (98 %) | 14 diff (98.3 %id) | |||
| CV375082 | bladder_tumor | .a | 1303 to 1938 | 1 to 628 | 628/629 (99 %) | 34 diff (94.6 %id) | |||
| BG679927 | skin, squamous cell carcinoma | .a | 1303 to 2098 | 1 to 796 | 796/797 (99 %) | 1 diff (99.9 %id) | |||
| BQ356453 | head_neck | .a | 1305 to 1921 | 625 to 17 | 609/662 (91 %) | 8 diff (98.8 %id) | |||
| BG676521 | skin, squamous cell carcinoma | .a | 1307 to 2305 | 1 to 1007 | 1007/1060 (95 %) | 33 diff (96.9 %id) | |||
| CV379506 | bladder_tumor | .a | 1311 to 1668 | 358 to 1 | Submitted on the opposite strand | 358/358 (100 %) | 3 diff (99.2 %id) | ||
| BG677710 | skin, squamous cell carcinoma | .a | 1327 to 2215 | 1 to 891 | 891/891 (100 %) | 7 diff (99.3 %id) | |||
| BG678488 | skin, squamous cell carcinoma | .a | 1380 to 2220 | 1 to 843 | 843/843 (100 %) | 6 diff (99.3 %id) | |||
| BG697772 | skin | .a | 1390 to 2154 | 1 to 765 | 765/765 (100 %) | 4 diff (99.5 %id) | |||
| BE181572. matches multiple genes | head_neck | .a | 1397 to 1490 | 9 to 101 | also hits gene KRT6AandKRT6C | 93/101 (92 %) | 10 diff (90.1 %id) | ||
| BQ299883 | bladder_tumor | .a | 1404 to 1682 | 277 to 1 | 277/278 (99 %) | 4 diff (98.6 %id) | |||
| BG681990 | skin, squamous cell carcinoma | .a | 1404 to 2293 | 1 to 892 | 892/893 (99 %) | 7 diff (99.3 %id) | |||
| BG676451 | skin, squamous cell carcinoma | .a | 1418 to 2284 | 1 to 872 | 872/974 (89 %) | 6 diff (99.4 %id) | |||
| CV349253 | head_neck | .a | 1419 to 2016 | 1 to 596 | 596/596 (100 %) | 22 diff (96.4 %id) | |||
| CV369708. matches multiple genes | bladder_tumor | .a | 1423 to 1721 | 290 to 4 | Submitted on the opposite strand, also hits gene KRT6AandKRT6C | 287/292 (98 %) | 8 diff (97.3 %id) | ||
| TI_159716106 | .a | 1428 to 2383 | 1047 to 95 | AAA | 953/1057 (90 %) | 14 diff (98.7 %id) | |||
| AW381696 | head_neck | .a | 1433 to 2003 | 11 to 582 | 572/591 (96 %) | 14 diff (97.7 %id) | |||
| BF843056 | head_neck | .a | 1456 to 1926 | 19 to 489 | 471/490 (96 %) | 10 diff (98.0 %id) | |||
| BG988392 | head_neck | .a | 1475 to 1691 | 1 to 225 | 225/229 (98 %) | 26 diff (88.7 %id) | |||
| BG988409 | head_neck | .a | 1494 to 1655 | 1 to 161 | 161/161 (100 %) | 5 diff (96.9 %id) | |||
| BG952693 | colon | .a | 1517 to 1695 | 18 to 196 | 179/196 (91 %) | 7 diff (96.5 %id) | |||
| BG952694. matches multiple genes | colon | .a | 1517 to 1644 | 1 to 127 | also hits gene KRT6AandKRT6C | 127/127 (100 %) | 10 diff (92.2 %id) | ||
| BM018764 | astrocytoma grade IV, cell line, brain | .a | 1523 to 2332 | 1 to 811 | tiling clone, | 811/811 (100 %) | 2 diff (99.8 %id) | ||
| TI_59389433 | .a | 1524 to 2332 | 92 to 901 | 810/810 (100 %) | 1 diff (99.9 %id) | ||||
| BM909985 | astrocytoma grade IV, cell line, brain | .a | 1525 to 2287 | 1 to 769 | 769/1035 (74 %) | 28 diff (97.3 %id) | |||
| AW361132 | colon | .a | 1547 to 2046 | 1 to 502 | 502/502 (100 %) | 11 diff (97.9 %id) | |||
| AW998022 | breast_normal | .a | 1573 to 1808 | 1 to 237 | 237/237 (100 %) | 5 diff (97.9 %id) | |||
| BG945750 | bladder_tumor | .a | 1573 to 1735 | 4 to 166 | 163/166 (98 %) | 8 diff (95.2 %id) | |||
| BF836204 | head_neck | .a | 1584 to 1910 | 1 to 334 | 342/334 (102 %) | 14 diff (95.9 %id) | |||
| AW994261 | breast_normal | .a | 1603 to 2208 | 609 to 5 | Submitted on the opposite strand | 605/628 (96 %) | 0 diff (100 %id) | ||
| BF738448. matches multiple genes | bladder_tumor | .a | 1603 to 1732 | 25 to 157 | tiling clone, | also hits gene KRT6AandKRT6C | 133/157 (84 %) | 7 diff (95.6 %id) | |
| BE716613. matches multiple genes | head_neck | .a | 1605 to 1924 | 349 to 24 | tiling clone, | also hits gene KRT6AandKRT6C | 326/365 (89 %) | 0 diff (100 %id) | |
| BG741760 | skin | .a | 1628 to 2281 | 1 to 656 | 656/659 (99 %) | 3 diff (99.6 %id) | |||
| BF837713 | head_neck | .a | 1629 to 1915 | 294 to 8 | Submitted on the opposite strand | 287/294 (97 %) | 0 diff (100 %id) | ||
| BF736544 | bladder_tumor | .a | 1656 to 2186 | 535 to 6 | Submitted on the opposite strand | 530/535 (99 %) | 0 diff (100 %id) | ||
| AA586890 | larynx | .a | 1657 to 1999 | 1 to 343 | Submitted on the opposite strand | 343/343 (100 %) | 0 diff (100 %id) | ||
| CK816151 | breast, cancer cells growing in a xenograft mousemodel | .a | 1673 to 2383 | 15 to 724 | AAA | 710/724 (98 %) | 8 diff (98.9 %id) | ||
| AW994181 | breast_normal | .a | 1675 to 2299 | 626 to 4 | Submitted on the opposite strand | 623/628 (99 %) | 0 diff (100 %id) | ||
| BG987560 | head_neck | .a | 1709 to 2063 | 12 to 366 | 355/366 (96 %) | 6 diff (98.4 %id) | |||
| AI608611 | normal gingiva (cell line from primarykeratinocytes) | .a | 1716 to 1998 | 281 to 1 | 281/281 (100 %) | 7 diff (97.6 %id) | |||
| BG986320 | head_neck | .a | 1717 to 1960 | 1 to 243 | 243/244 (99 %) | 5 diff (98.0 %id) | |||
| BF835792 | head_neck | .a | 1733 to 1890 | 1 to 154 | 154/154 (100 %) | 7 diff (95.5 %id) | |||
| AI609259 | normal gingiva (cell line from primarykeratinocytes) | .a | 1738 to 1998 | 260 to 1 | 260/260 (100 %) | 4 diff (98.5 %id) | |||
| AW369119 | head_neck | .a | 1758 to 2348 | 594 to 4 | 591/595 (99 %) | 0 diff (100 %id) | |||
| BG987554 | head_neck | .a | 1759 to 2122 | 371 to 7 | 365/371 (98 %) | 0 diff (100 %id) | |||
| BE183185 | head_neck | .a | 1783 to 2141 | 1 to 359 | 359/359 (100 %) | 6 diff (98.4 %id) | |||
| BF843069 | head_neck | .a | 1783 to 2062 | 25 to 304 | 280/304 (92 %) | 6 diff (98.1 %id) | |||
| AI829113 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .a | 1792 to 2382 | 589 to 1 | 589/589 (100 %) | 5 diff (99.2 %id) | |||
| AU147677 | mammary gland | .a | 1799 to 2383 | 586 to 1 | 586/586 (100 %) | 15 diff (97.5 %id) | |||
| AI831452 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .a | 1800 to 2385 | 586 to 1 | tiling clone, | 586/597 (98 %) | 4 diff (99.4 %id) | ||
| AU147924 | mammary gland | .a | 1815 to 2383 | 566 to 1 | 566/566 (100 %) | 20 diff (96.5 %id) | |||
| CB250438 | Human Lung Epithelial cells, lung | .a | 1834 to 2383 | 568 to 19 | AAA | 550/550 (100 %) | 0 diff (100 %id) | ||
| AW379509 | head_neck | .a | 1855 to 2269 | 1 to 416 | 416/418 (99 %) | 12 diff (97.2 %id) | |||
| W93639 | heart | .a | 1869 to 2383 | 522 to 1 | 522/522 (100 %) | 13 diff (97.6 %id) | |||
| BF868946 | lung_tumor | .a | 1892 to 2296 | 404 to 1 | Submitted on the opposite strand | 404/404 (100 %) | 2 diff (99.6 %id) | ||
| BG991287 | head_neck | .a | 1898 to 2101 | 204 to 1 | 204/205 (99 %) | 1 diff (99.6 %id) | |||
| AW293448 | .a | 1902 to 2383 | 499 to 18 | AAA | 482/482 (100 %) | 0 diff (100 %id) | |||
| BF827613 | head_normal | .a | 1948 to 2367 | 427 to 7 | Submitted on the opposite strand | 421/429 (98 %) | 0 diff (100 %id) | ||
| BE185602 | head_neck | .a | 1981 to 2303 | 328 to 6 | Submitted on the opposite strand | 323/328 (98 %) | 0 diff (100 %id) | ||
| BF842515 | head_neck | .a | 1997 to 2201 | 1 to 205 | 205/205 (100 %) | 0 diff (100 %id) | |||
| BF836810 | head_neck | .a | 2009 to 2160 | 153 to 2 | Submitted on the opposite strand | 152/153 (99 %) | 0 diff (100 %id) | ||
| AA861951 | squamous cell carcinoma from base of tongue, tongue | .a | 2010 to 2385 | 377 to 2 | 376/377 (99 %) | 0 diff (100 %id) | |||
| AA583760 | larynx | .a | 2012 to 2355 | 344 to 1 | 344/344 (100 %) | 0 diff (100 %id) | |||
| AA583810 | larynx | .a | 2012 to 2385 | 376 to 3 | 374/376 (99 %) | 0 diff (100 %id) | |||
| AA583913 | larynx | .a | 2012 to 2354 | 343 to 1 | 343/343 (100 %) | 0 diff (100 %id) | |||
| AA586925 | larynx | .a | 2012 to 2385 | 374 to 1 | 374/374 (100 %) | 0 diff (100 %id) | |||
| AW243951 | well-differentiated invasive carcinoma,floor of mouth | .a | 2013 to 2349 | 1 to 337 | Submitted on the opposite strand | 337/337 (100 %) | 0 diff (100 %id) | ||
| AW998870 | breast_normal | .a | 2015 to 2195 | 1 to 181 | 181/181 (100 %) | 5 diff (97.3 %id) | |||
| AA583818 | larynx | .a | 2015 to 2354 | 340 to 1 | 340/340 (100 %) | 0 diff (100 %id) | |||
| BF354245 | head_neck | .a | 2021 to 2308 | 1 to 288 | 288/288 (100 %) | 1 diff (99.7 %id) | |||
| BF350150 | head_neck | .a | 2044 to 2208 | 20 to 184 | 165/194 (85 %) | 6 diff (97.0 %id) | |||
| AW238225 | carcinoma in situ from retromolar trigone | .a | 2068 to 2383 | 339 to 24 | AAA | 316/316 (100 %) | 3 diff (99.1 %id) | ||
| AA584013 | larynx | .a | 2073 to 2383 | 344 to 34 | AAA | 311/311 (100 %) | 0 diff (100 %id) | ||
| BG696718 | skin | .a | 2088 to 2383 | 1 to 296 | AAA | 296/296 (100 %) | 0 diff (100 %id) | ||
| BX095511 | heart | .a | 2093 to 2383 | 1 to 291 | AAA | 291/291 (100 %) | 0 diff (100 %id) | ||
| D29287 | .a | 2107 to 2383 | 1 to 277 | 277/277 (100 %) | 0 diff (100 %id) | ||||
| AW238576 | carcinoma in situ from retromolar trigone | .a | 2107 to 2393 | 293 to 7 | 287/296 (96 %) | 10 diff (96.7 %id) | |||
| AA026418 | heart | .a | 2124 to 2383 | 278 to 19 | AAA | 260/260 (100 %) | 0 diff (100 %id) | ||
| AW946461 | lung_tumor | .a | 2174 to 2290 | 117 to 1 | Submitted on the opposite strand | 117/117 (100 %) | 0 diff (100 %id) | ||
| AW946469 | lung_tumor | .a | 2174 to 2300 | 134 to 9 | Submitted on the opposite strand | 126/134 (94 %) | 0 diff (100 %id) | ||
| AW083719 | esophagus, squamous cell carcinoma | .a | 2176 to 2383 | 228 to 21 | AAA | 208/208 (100 %) | 4 diff (98.1 %id) | ||
| AA584251 | larynx | .a | 2177 to 2383 | 251 to 45 | AAA | 207/207 (100 %) | 1 diff (99.6 %id) | ||
| AA584033 | larynx | .a | 2255 to 2383 | 162 to 34 | AAA | 129/129 (100 %) | 0 diff (100 %id) | ||
| CV414813 | breast_normal | .b | 1 to 695 | 1 to 692 | M2T L5W V6W E7R D8T ... | tiling clone, | 692/736 (94 %) | 16 diff (97.9 %id) | |
| CV414792 | breast_normal | .b | 2 to 699 | 1 to 691 | M2Q L5W V6W E7R D8T ... | tiling clone, | 691/693 (99 %) | 17 diff (97.6 %id) | |
| CV348600 | head_normal | .c | 1 to 526 | 1 to 529 | A8G K9Q A10G D11R T12H ... | tiling clone, | 529/529 (100 %) | 15 diff (97.2 %id) | |
| BG997611 | head_neck | .c | 418 to 921 | 543 to 42 | tiling clone, | 502/543 (92 %) | 0 diff (100 %id) | ||
| BG945766. matches multiple genes | bladder_tumor | .d | 1 to 171 | 171 to 2 | tiling clone, | also hits gene KRT6AandKRT6C | 170/171 (99 %) | 3 diff (98.3 %id) | |
| BF737388 | bladder_tumor | .d | 28 to 140 | 121 to 10 | Submitted on the opposite strand | 112/121 (92 %) | 0 diff (100 %id) | ||
| CB852334 | Human Lung Epithelial cells, lung | .d | 28 to 824 | 815 to 19 | tiling clone, AAA | 797/797 (100 %) | 3 diff (99.7 %id) | ||
| AW994241 | breast_normal | .d | 30 to 614 | 588 to 3 | Submitted on the opposite strand | 586/588 (99 %) | 1 diff (99.9 %id) | ||
| BF739064 | bladder_tumor | .d | 30 to 287 | 1 to 258 | 258/258 (100 %) | 5 diff (98.1 %id) | |||
| BE004048 | breast_normal | .d | 33 to 317 | 1 to 286 | 286/291 (98 %) | 8 diff (97.3 %id) | |||
| BE719864. matches multiple genes | head_neck | .d | 35 to 180 | 147 to 1 | tiling clone, | also hits gene KRT6AandKRT6C | 147/147 (100 %) | 13 diff (91.2 %id) | |
| BG680996 | skin, squamous cell carcinoma | .d | 44 to 775 | 1 to 734 | tiling clone, | 734/734 (100 %) | 4 diff (99.5 %id) | ||
| AK296729 | tongue, tumor tissue | Gene KRT6B, variant not shown | Suspected internal deletion, this clone was ignored | ||||||
| BI036961 | nervous_tumor | Gene KRT6B, variant not shown | Suspected internal deletion, this clone was ignored | ||||||
| BI036971 | nervous_tumor | Gene KRT6B, variant not shown | Suspected internal deletion, this clone was ignored |
| ? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes DCI |