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Gene RRP36andKLC4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
597 representative clones for gene RRP36andKLC4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA183423 amygdala .a 1 to 494 2 to 496   tiling clone, capped   495/495
(100 %)
1 diff
(99.8 %id)
DB160602 thymus .a 2 to 592 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
DA449079 tongue, tumor tissue .a 3 to 541 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA855358 placenta .a 4 to 545 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB287956 uterus .a 4 to 570 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA226302 brain .a 5 to 541 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA406179 thalamus .a 5 to 565 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB282787 uterus .a 9 to 554 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA798159 brain .a 47 to 588 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB227749 trachea .a 47 to 605 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BQ072813 leukocyte .a 253 to 1122 18 to 890       873/1048
(83 %)
18 diff
(98.3 %id)
AK094102 adrenal gland .a 260 to 2913 1 to 2654 M452L tiling clone, available from FLJ,   2654/2654
(100 %)
1 diff
(100.0 %id)
DA250348 caudate nucleus .a 260 to 516 2 to 258   capped   257/257
(100 %)
0 diff
(100 %id)
NM_201523.1   .a 260 to 2915 1 to 2656 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 2656/2656
(100 %)
0 diff
(100 %id)
DA010307 adrenal gland .a 261 to 814 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CN311501 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 283 to 963 13 to 692       680/692
(98 %)
7 diff
(99.0 %id)
DB295239 adrenal gland .a 2403 to 2913 512 to 1       512/512
(100 %)
1 diff
(99.9 %id)
DA416153 thalamus .b 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DA335314 hippocampus .b 5 to 571 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA785134 brain .b 7 to 555 2 to 550   capped   549/549
(100 %)
4 diff
(99.3 %id)
DA309390 hippocampus .b 28 to 483 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA103257 cerebellum .b 30 to 570 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA238153 brain .b 30 to 573 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA236098 brain .b 33 to 619 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
BX471638   .b 40 to 519 1 to 478       478/478
(100 %)
3 diff
(99.4 %id)
BQ948563 epidermoid carcinoma, cell line, lung .b 41 to 802 1 to 766       766/916
(83 %)
9 diff
(99.1 %id)
BQ956903 epidermoid carcinoma, cell line, lung .b 41 to 802 1 to 763       763/979
(77 %)
5 diff
(99.5 %id)
DA112900 cerebellum .b 42 to 572 2 to 531   capped   530/532
(99 %)
3 diff
(99.5 %id)
DA384452 thalamus .b 42 to 672 2 to 633   capped   632/633
(99 %)
2 diff
(99.7 %id)
DB147312 thymus .b 42 to 605 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BX401863   .b 43 to 1086 1 to 1038       1038/1038
(100 %)
11 diff
(99.0 %id)
BM146442 leukopheresis .b 45 to 455 1 to 411       411/411
(100 %)
13 diff
(96.9 %id)
DB081037 testis .b 45 to 512 2 to 469   capped   468/468
(100 %)
1 diff
(99.8 %id)
CN289410 embryonic stem cells, DMSO-treated H9 cellline .b 46 to 678 1 to 634       634/634
(100 %)
6 diff
(99.1 %id)
DA721013   .b 47 to 610 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA807208 brain .b 47 to 555 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
TI_57244645   .b 57 to 775 32 to 748       717/748
(95 %)
6 diff
(99.2 %id)
BI917355 brain .b 62 to 775 1 to 712       712/712
(100 %)
15 diff
(97.9 %id)
DA387748 thalamus .b 65 to 650 2 to 587   capped   586/587
(99 %)
3 diff
(99.5 %id)
DA527963 brain .b 271 to 695 2 to 426   capped   425/425
(100 %)
2 diff
(99.6 %id)
DA776417 brain .b 271 to 846 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
CF243161 Brain glioblastoma .b 468 to 1045 1 to 586       586/876
(66 %)
29 diff
(96.7 %id)
DA626484 Kidney .b 476 to 1055 2 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
BQ688778 ductal carcinoma, cell line, Pancreas .b 595 to 1505 1 to 921   tiling clone,   888/924
(96 %)
36 diff
(96.2 %id)
NM_201522.1   .b 595 to 3064 1 to 2470 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 2470/2470
(100 %)
0 diff
(100 %id)
AK127894 small intestine .b 710 to 3064 1 to 2373 Q56T G57I G58E H59C E60L ... available from FLJ,   2373/2373
(100 %)
8 diff
(99.7 %id)
DA924282 small intestine .b 711 to 1254 2 to 563   capped   562/562
(100 %)
7 diff
(98.8 %id)
DB332075 small intestine .b 2511 to 3064 554 to 1   tiling clone,   554/554
(100 %)
0 diff
(100 %id)
DR006186 Prostate .c 1 to 661 1 to 661   tiling clone,   661/661
(100 %)
2 diff
(99.7 %id)
AK055293 brain .c 2 to 2771 1 to 2770 R72H tiling clone, available from FLJ,   2770/2770
(100 %)
4 diff
(99.9 %id)
DA512985 brain .c 3 to 514 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
DA835055 placenta .c 3 to 549 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA396362 thalamus .c 140 to 731 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
TI_57147039   .c 386 to 1127 23 to 766       744/766
(97 %)
8 diff
(99.0 %id)
DA916819 small intestine .c 388 to 943 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB187587 liver, tumor tissue .c 388 to 962 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP223754 colon mucosa .c 408 to 1069 1 to 660       660/824
(80 %)
8 diff
(99.1 %id)
DB184916 liver, tumor tissue .c 409 to 980 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BP261595 small intestine .c 410 to 990 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP262149 small intestine .c 410 to 991 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA924171 small intestine .c 411 to 979 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB199551 trachea .c 411 to 985 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP220603 colon .c 415 to 986 1 to 572       572/573
(99 %)
4 diff
(99.4 %id)
DA430542 colon .c 415 to 981 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
BP270996 small intestine .c 415 to 997 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA626020 Kidney .c 415 to 961 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA920690 small intestine .c 415 to 985 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA376548 thalamus .c 416 to 971 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP223743 colon mucosa .c 416 to 701 1 to 286       286/302
(94 %)
2 diff
(99.4 %id)
DA428938 colon .c 416 to 982 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA432049 colon .c 416 to 912 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
DA593758 lung .c 416 to 981 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA623296 Kidney .c 416 to 964 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA627033 Kidney .c 416 to 965 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA629046 Kidney .c 416 to 998 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA630765 Kidney .c 416 to 989 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA634838 Kidney .c 416 to 974 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
CB141740 Liver .c 416 to 984 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
DA641758 Liver .c 416 to 1130 2 to 717   capped   716/716
(100 %)
4 diff
(99.5 %id)
DA642023 Liver .c 416 to 1098 2 to 684   tiling clone, capped   683/683
(100 %)
0 diff
(100 %id)
DA927456 small intestine .c 416 to 997 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB182434 liver, tumor tissue .c 416 to 968 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB185577 liver, tumor tissue .c 416 to 975 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB211588 trachea .c 416 to 951 2 to 537   capped   536/537
(99 %)
1 diff
(99.9 %id)
DA920532 small intestine .c 417 to 973 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
CB142901 Liver .c 420 to 836 1 to 417       417/417
(100 %)
0 diff
(100 %id)
DA929562 small intestine .c 420 to 976 2 to 562   capped   561/561
(100 %)
4 diff
(99.3 %id)
DA385023 thalamus .c 423 to 1013 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DA371083 thalamus .c 426 to 1000 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA372276 thalamus .c 426 to 983 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BQ649686 hepatocellular carcinoma, cell line, Liver .c 426 to 1245 1 to 830       830/897
(92 %)
31 diff
(96.6 %id)
DA929497 small intestine .c 426 to 985 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
BQ648106 hepatocellular carcinoma, cell line, Liver .c 427 to 1245 1 to 823       823/859
(95 %)
20 diff
(97.7 %id)
TI_57152284   .c 435 to 1180 8 to 752       745/753
(98 %)
15 diff
(98.1 %id)
BP270886 small intestine .c 446 to 1027 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB316553 brain .c 2229 to 2771 543 to 1       543/543
(100 %)
1 diff
(99.9 %id)
DA782235 brain .d 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DB021733 testis .d 1 to 556 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA507299 brain .d 7 to 541 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA987033 synovial membrane tissue from rheumatioidarthritis .d 10 to 560 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DB103352 thymus .d 15 to 581 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA063502 cerebellum .d 26 to 597 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA494762 brain .d 35 to 562 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA865936 Prostate .d 36 to 605 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA498812 brain .d 37 to 593 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BP262353 small intestine .d 37 to 618 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA887130   .d 37 to 603 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DA003539   .d 38 to 605 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA135708 alzheimer cortex .d 38 to 575 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA268447 caudate nucleus .d 38 to 603 2 to 568   capped   567/569
(99 %)
2 diff
(99.7 %id)
DA271722 caudate nucleus .d 38 to 599 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA426627 colon .d 38 to 434 2 to 398   capped   397/397
(100 %)
0 diff
(100 %id)
DA436865 tongue, tumor tissue .d 38 to 624 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA510287 brain .d 38 to 617 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA523015 brain .d 38 to 606 2 to 570   capped   569/570
(99 %)
3 diff
(99.5 %id)
DA532020 brain .d 38 to 649 2 to 613   capped   612/612
(100 %)
1 diff
(99.9 %id)
DA573671   .d 38 to 577 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA605980   .d 38 to 593 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA691374   .d 38 to 601 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA776586 brain .d 38 to 605 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA777788 brain .d 38 to 617 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA782932 brain .d 38 to 611 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA788945 brain .d 38 to 598 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA840025 placenta .d 38 to 590 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA842768 placenta .d 38 to 617 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA872654 Prostate .d 38 to 599 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA886668   .d 38 to 588 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA927184 small intestine .d 38 to 621 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA940584 Spleen .d 38 to 640 2 to 604   capped   603/603
(100 %)
1 diff
(99.9 %id)
DA965853 stomach .d 38 to 594 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA980035 synovial membrane tissue from rheumatioidarthritis .d 38 to 603 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB041713 testis .d 38 to 591 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA541090 lung .d 39 to 623 2 to 587   capped   586/586
(100 %)
4 diff
(99.4 %id)
DA541102 lung .d 39 to 623 2 to 587   capped   586/586
(100 %)
4 diff
(99.4 %id)
AK056393   .d 40 to 2403 1 to 2364 T286S I366T available from FLJ,   2364/2364
(100 %)
2 diff
(100.0 %id)
DA167612 amygdala .d 40 to 605 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA284537 corpus callosum .d 40 to 608 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA290867 hippocampus .d 40 to 603 8 to 573   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA439316 tongue, tumor tissue .d 40 to 601 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA533772 brain .d 40 to 606 2 to 568   capped   567/572
(99 %)
2 diff
(99.7 %id)
BP237923 Liver .d 40 to 657 1 to 619       619/619
(100 %)
5 diff
(99.2 %id)
NM_201521.1   .d 40 to 2399 1 to 2360 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 2360/2360
(100 %)
0 diff
(100 %id)
DA773754 brain .d 40 to 603 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA009562 adrenal gland .d 41 to 615 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA142058 alzheimer cortex .d 41 to 605 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA208771 brain .d 41 to 608 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA279892 corpus callosum .d 41 to 605 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA441012 tongue, tumor tissue .d 41 to 599 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA475827   .d 41 to 611 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA481417   .d 41 to 592 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA487168 brain .d 41 to 615 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA487356 brain .d 41 to 615 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA492421 brain .d 41 to 602 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA509718 brain .d 41 to 604 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA513715 brain .d 41 to 602 2 to 563   capped   562/564
(99 %)
1 diff
(99.9 %id)
DA518281 brain .d 41 to 601 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA541054 lung .d 41 to 616 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA548946   .d 41 to 599 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA592480 lung .d 41 to 596 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA626112 Kidney .d 41 to 575 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA698578   .d 41 to 532 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DA702465   .d 41 to 496 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
DA796859 brain .d 41 to 587 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA845650 placenta .d 41 to 590 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA876178 Prostate .d 41 to 594 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BM742456 Ascites, stomach .d 41 to 553 1 to 513       513/513
(100 %)
0 diff
(100 %id)
BM757199 Ascites, stomach .d 41 to 602 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DA898041 skeletal muscle .d 41 to 592 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA935230 Spleen .d 41 to 635 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA945710 Spleen .d 41 to 597 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DB104293 thymus .d 41 to 597 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DB121215 thymus .d 41 to 584 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB205085 trachea .d 41 to 625 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DB209513 trachea .d 41 to 601 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA026112   .d 42 to 610 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA027082   .d 42 to 606 2 to 567   capped   566/568
(99 %)
2 diff
(99.7 %id)
DA031875   .d 42 to 605 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA047987   .d 42 to 631 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA085062 cerebellum .d 42 to 616 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA085089 cerebellum .d 42 to 617 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA166410 amygdala .d 42 to 605 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA198571 brain .d 42 to 605 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA204236 brain .d 42 to 637 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA307187 hippocampus .d 42 to 499 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DA422783 cervix .d 42 to 599 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA423156   .d 42 to 578 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA442035 tongue, tumor tissue .d 42 to 597 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA452499 tongue, tumor tissue .d 42 to 599 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA488501 brain .d 42 to 599 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA493999 brain .d 42 to 549 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
DA498346 brain .d 42 to 617 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA499012 brain .d 42 to 599 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA502578 brain .d 42 to 562 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA527317 brain .d 42 to 628 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA647918   .d 42 to 594 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA745369   .d 42 to 621 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA782159 brain .d 42 to 603 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA886976   .d 42 to 603 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB167612 kidney, tumor tissue .d 42 to 607 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA789432 brain .d 43 to 620 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA531123 brain .d 44 to 520 2 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
DA877535 Prostate .d 44 to 606 2 to 566   capped   565/566
(99 %)
4 diff
(99.3 %id)
DA078186 cerebellum .d 45 to 608 2 to 566   capped   565/565
(100 %)
5 diff
(99.2 %id)
DA208339 brain .d 45 to 597 2 to 554   capped   553/554
(99 %)
2 diff
(99.7 %id)
DA266460 caudate nucleus .d 45 to 596 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA293714 hippocampus .d 45 to 624 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA703659   .d 45 to 496 2 to 453   capped   452/455
(99 %)
1 diff
(99.8 %id)
DA890088 rectum .d 45 to 614 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA151473 amygdala .d 46 to 606 2 to 564   capped   563/564
(99 %)
3 diff
(99.5 %id)
DA541952 lung .d 46 to 597 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA595594 lung .d 46 to 612 2 to 569   capped   568/568
(100 %)
4 diff
(99.3 %id)
DA628420 Kidney .d 46 to 597 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA753291   .d 46 to 597 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB173317 kidney, tumor tissue .d 46 to 620 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DB205213 trachea .d 46 to 615 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA038329   .d 47 to 607 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB206492 trachea .d 48 to 496 11 to 459   capped   449/449
(100 %)
0 diff
(100 %id)
TI_57182672   .d 49 to 860 31 to 844       814/849
(95 %)
13 diff
(98.5 %id)
DA000909   .d 51 to 558 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BP373629 umbilical cord .d 51 to 631 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA529064 brain .d 52 to 662 2 to 612   capped   611/611
(100 %)
0 diff
(100 %id)
AI929486 brain, frontal lobe .d 53 to 462 1 to 410       410/410
(100 %)
0 diff
(100 %id)
DA011564 adrenal gland .d 54 to 623 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA076136 cerebellum .d 54 to 607 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
DA452196 tongue, tumor tissue .d 54 to 630 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA484450 brain .d 54 to 541 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA582427 lung .d 54 to 608 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BI826143 brain, medulla .d 54 to 694 1 to 641       641/641
(100 %)
2 diff
(99.7 %id)
BI771228 pooled lung and spleen .d 54 to 860 1 to 809       809/814
(99 %)
6 diff
(99.3 %id)
DB032025 testis .d 54 to 616 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
CF242910 Brain glioblastoma .d 57 to 902 1 to 851       851/854
(99 %)
11 diff
(98.8 %id)
BG491773 amelanotic melanoma, cell line, skin .d 58 to 788 1 to 738   available from MGC,   738/886
(83 %)
11 diff
(98.8 %id)
BC080637 Prostate, carcinoma .d 60 to 2399 1 to 2340 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 2340/2340
(100 %)
0 diff
(100 %id)
BG749449 eye, normal pigmented retinal epithelium .d 60 to 666 1 to 607       607/609
(99 %)
4 diff
(99.4 %id)
BQ894804 brain, neuroblastoma, cell line .d 60 to 911 1 to 858       858/905
(94 %)
12 diff
(98.7 %id)
BQ943732 large cell carcinoma, lung .d 60 to 988 1 to 941       939/946
(99 %)
18 diff
(98.1 %id)
BQ927045 large cell carcinoma, lung .d 60 to 911 1 to 858       858/947
(90 %)
16 diff
(98.4 %id)
BQ941585 large cell carcinoma, lung .d 60 to 907 1 to 849       849/910
(93 %)
11 diff
(98.8 %id)
BU541349 carcinoma, cell line, Prostate .d 61 to 911 1 to 854       854/883
(96 %)
6 diff
(99.4 %id)
BC103727 Skin, melanotic melanoma. .d 62 to 2397 1 to 2336 exact AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 2336/2336
(100 %)
0 diff
(100 %id)
BQ437807 melanotic melanoma, skin .d 63 to 804 1 to 744       744/913
(81 %)
10 diff
(99.0 %id)
DB168795 kidney, tumor tissue .d 63 to 653 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DR004539 placenta .d 66 to 784 8 to 726       719/726
(99 %)
6 diff
(99.2 %id)
CA405753 adipose .d 67 to 416 1 to 350       350/350
(100 %)
0 diff
(100 %id)
BQ072431 pooled lung and spleen .d 67 to 1061 1 to 1006       1004/1044
(96 %)
29 diff
(97.3 %id)
BQ958463 epidermoid carcinoma, cell line, lung .d 67 to 911 1 to 850       850/950
(89 %)
22 diff
(97.7 %id)
DA471764   .d 72 to 633 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA626798 Kidney .d 72 to 635 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB127345 thymus .d 72 to 637 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB202901 trachea .d 72 to 655 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA602904   .d 76 to 653 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
BE253479 eye, retinoblastoma .d 80 to 722 1 to 642       642/642
(100 %)
3 diff
(99.6 %id)
BE267307 lung, small cell carcinoma .d 85 to 881 1 to 792       792/947
(83 %)
21 diff
(97.8 %id)
CN311502 embryonic stem cells, cell lines H1, H7, andH9 .d 86 to 730 1 to 646       646/646
(100 %)
6 diff
(99.1 %id)
BE257678 eye, retinoblastoma .d 87 to 760 1 to 671       671/710
(94 %)
8 diff
(98.9 %id)
AL560988 B cells from Burkitt lymphoma .d 91 to 888 1 to 802       802/802
(100 %)
7 diff
(99.2 %id)
BM805179 ovary (pool of 3) .d 92 to 847 61 to 822       762/1098
(69 %)
27 diff
(97.6 %id)
EL733509 mixed .d 117 to 712 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
BX328346   .d 156 to 1055 13 to 907       895/907
(98 %)
18 diff
(98.1 %id)
TI_57229810   .d 171 to 891 53 to 772       720/720
(100 %)
1 diff
(99.9 %id)
BI870865 adenocarcinoma, cell line, Liver .d 172 to 891 1 to 719       719/719
(100 %)
1 diff
(99.9 %id)
BG118776 adenocarcinoma, cell line, Liver .d 303 to 949 1 to 649       649/650
(99 %)
5 diff
(99.3 %id)
DB110245 thymus .d 311 to 878 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BU856089 ovary, teratocarcinoma, cell line .d 341 to 1103 9 to 777       769/928
(82 %)
23 diff
(97.6 %id)
DA748603   .d 341 to 897 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BQ071076 brain, neuroblastoma, cell line .d 679 to 1605 1 to 935       935/970
(96 %)
18 diff
(98.2 %id)
BI833738 pooled pancreas and spleen .d 813 to 1430 1 to 617       617/617
(100 %)
1 diff
(99.9 %id)
TI_57166827   .d 813 to 1430 29 to 645       617/645
(95 %)
6 diff
(99.1 %id)
AL162078 amygdala .d 908 to 2397 1 to 1489   available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 1489/1489
(100 %)
1 diff
(100.0 %id)
BM560753 eye, retinoblastoma .d 952 to 1809 1 to 864       864/1075
(80 %)
27 diff
(97.5 %id)
BE391899 endometrium, adenocarcinoma cell line, uterus .d 998 to 1680 1 to 683       683/691
(98 %)
11 diff
(98.5 %id)
BE727090 melanotic melanoma, skin .d 1015 to 1746 1 to 734       734/905
(81 %)
9 diff
(99.1 %id)
BU173833 melanotic melanoma, cell line, skin .d 1189 to 1920 26 to 758       736/885
(83 %)
11 diff
(98.8 %id)
AL560966 B cells from Burkitt lymphoma .d 1428 to 2352 927 to 8       920/927
(99 %)
9 diff
(99.1 %id)
BQ070342 brain, neuroblastoma, cell line .d 1557 to 2392 1 to 836       836/841
(99 %)
4 diff
(99.6 %id)
BG468222 adenocarcinoma cell line, colon .d 1571 to 2210 1 to 646       646/775
(83 %)
15 diff
(98.1 %id)
TI_149313542   .d 1606 to 2397 871 to 89   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 783/929
(84 %)
9 diff
(99.1 %id)
TI_151704485   .d 1620 to 2391 859 to 92   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 768/954
(80 %)
6 diff
(99.4 %id)
BM711543 eye, optic nerve .d 1622 to 2210 1 to 589       589/589
(100 %)
0 diff
(100 %id)
TI_149295858   .d 1669 to 2397 820 to 106   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 715/891
(80 %)
24 diff
(97.4 %id)
BQ774548 Chondrosarcoma Grade II, Left Pelvis .d 1671 to 2397 736 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 718/718
(100 %)
9 diff
(98.8 %id)
CB305435 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 1685 to 2397 731 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 713/713
(100 %)
0 diff
(100 %id)
CA450484 Human Lung Epithelial cells, lung .d 1687 to 2399 731 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 713/713
(100 %)
0 diff
(100 %id)
BQ771889 Chondrosarcoma Grade II, Left Pelvis .d 1687 to 2391 719 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 701/701
(100 %)
6 diff
(99.2 %id)
BM683515 eye, fetal eye .d 1688 to 2397 721 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 703/703
(100 %)
5 diff
(99.3 %id)
BQ184787 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1745 to 2397 673 to 19   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 655/658
(99 %)
2 diff
(99.7 %id)
CU451974 epidermis .d 1788 to 2171 399 to 16     Submitted on the opposite strand 384/410
(93 %)
5 diff
(98.8 %id)
BF755699 colon .d 1816 to 2001 1 to 186       186/187
(99 %)
4 diff
(97.9 %id)
BF755711 colon .d 1826 to 2001 1 to 174       174/175
(99 %)
4 diff
(97.8 %id)
BQ185734 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1886 to 2391 1 to 506   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 506/506
(100 %)
0 diff
(100 %id)
BM931847 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1910 to 2397 1 to 488       488/489
(99 %)
1 diff
(99.8 %id)
AW959997   .d 1933 to 2391 1 to 459   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 459/459
(100 %)
0 diff
(100 %id)
DB314279.
matches multiple genes
tongue, tumor tissue .d 1939 to 2397 459 to 1     also hits gene HERC2P7, LOC646139 459/459
(100 %)
0 diff
(100 %id)
AI041608 senescent fibroblast .d 1939 to 2391 463 to 11   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 453/453
(100 %)
0 diff
(100 %id)
AI076952 breast .d 1961 to 2397 450 to 14   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 437/437
(100 %)
0 diff
(100 %id)
AW207184   .d 2004 to 2399 413 to 18   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AI929528 brain, frontal lobe .d 2009 to 2394 393 to 8       386/393
(98 %)
0 diff
(100 %id)
AI017685 Kidney .d 2026 to 2398 373 to 1       373/373
(100 %)
0 diff
(100 %id)
AW083465 colon, moderately differentiated adenocarcinoma .d 2069 to 2392 324 to 1       324/324
(100 %)
0 diff
(100 %id)
BF841762 head_neck .d 2138 to 2469 335 to 7   tiling clone, Submitted on the opposite strand 329/335
(98 %)
0 diff
(100 %id)
AW204073   .d 2150 to 2399 267 to 18   AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 250/250
(100 %)
0 diff
(100 %id)
CN307091 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 1 to 402 1 to 402   tiling clone,   402/402
(100 %)
2 diff
(99.6 %id)
BQ232790 embryonal carcinoma, cell line, testis .e 395 to 1008 1 to 617   tiling clone,   617/936
(65 %)
9 diff
(99.1 %id)
DA057399 cerebellum .e 435 to 989 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AK127018 brain .e 455 to 4058 1 to 3604 exact tiling clone, available from FLJ,   3604/3604
(100 %)
6 diff
(99.9 %id)
DA232029 brain .e 456 to 1028 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB118887 thymus .e 1730 to 2299 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA770226 brain .e 1735 to 1932 2 to 199   tiling clone, capped   198/198
(100 %)
0 diff
(100 %id)
DA293221 hippocampus .e 1741 to 2302 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BQ072463 pooled lung and spleen .e 1770 to 2631 1 to 871       871/1025
(84 %)
14 diff
(98.7 %id)
BF841462 head_neck .e 2215 to 2608 10 to 403       394/405
(97 %)
11 diff
(97.3 %id)
BG753262 eye, normal pigmented retinal epithelium .e 2263 to 2990 1 to 734       734/867
(84 %)
16 diff
(98.2 %id)
BG753171 eye, normal pigmented retinal epithelium .e 2263 to 2962 1 to 698       698/698
(100 %)
2 diff
(99.8 %id)
AL702524 human skeletal muscle .e 2269 to 2614 1 to 346       346/346
(100 %)
0 diff
(100 %id)
BG469830 adenocarcinoma cell line, colon .e 2276 to 2992 1 to 720       720/779
(92 %)
10 diff
(98.8 %id)
BF736484 bladder_tumor .e 2346 to 2541 1 to 190       190/193
(98 %)
13 diff
(93.3 %id)
BI760828 pooled colon, kidney, stomach .e 2365 to 2467 1 to 104       104/104
(100 %)
2 diff
(98.1 %id)
BI765375 pooled colon, kidney, stomach .e 2365 to 2520 1 to 156       156/157
(99 %)
7 diff
(95.6 %id)
CD580000 brain .e 2423 to 3097 1 to 672       672/698
(96 %)
13 diff
(98.2 %id)
BI050270 placenta_normal .e 2435 to 2649 1 to 215       215/215
(100 %)
3 diff
(98.7 %id)
BQ304411 breast .e 2437 to 2993 1 to 564       564/564
(100 %)
24 diff
(95.8 %id)
AA339301 brain .e 2594 to 2925 1 to 334       334/334
(100 %)
3 diff
(99.2 %id)
BE708263 head_neck .e 3092 to 3359 28 to 296       269/296
(90 %)
6 diff
(98.0 %id)
H58011 liver and spleen .e 3137 to 3506 1 to 373       373/387
(96 %)
10 diff
(97.5 %id)
TI_59380419   .e 3138 to 3594 60 to 516       457/461
(99 %)
4 diff
(99.2 %id)
BM011261 brain, neuroblastoma, cell line .e 3139 to 3594 1 to 456       456/460
(99 %)
4 diff
(99.2 %id)
AW839589 leiomios .e 3146 to 3630 491 to 7       485/491
(98 %)
3 diff
(99.4 %id)
AW839586 leiomios .e 3149 to 3630 488 to 7       482/488
(98 %)
3 diff
(99.4 %id)
BX107892 breast .e 3151 to 3844 1 to 694   tiling clone,   694/694
(100 %)
0 diff
(100 %id)
BF907069 uterus_tumor .e 3203 to 3576 1 to 373       373/375
(99 %)
5 diff
(98.7 %id)
AW838933 leiomios .e 3207 to 3555 24 to 372       349/374
(93 %)
16 diff
(95.8 %id)
BF907064 uterus_tumor .e 3218 to 3566 373 to 25     Submitted on the opposite strand 349/373
(93 %)
1 diff
(99.8 %id)
BQ379281 uterus_tumor .e 3219 to 3580 16 to 381       366/396
(92 %)
15 diff
(96.3 %id)
AW839579 leiomios .e 3272 to 3582 311 to 1       311/311
(100 %)
8 diff
(97.5 %id)
BF957579 nervous_normal .e 3301 to 3528 245 to 18       228/257
(88 %)
2 diff
(99.3 %id)
NM_138343.2   .f 1 to 1252 1 to 1252 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 1252/1252
(100 %)
0 diff
(100 %id)
BC012357 Skin, melanoma, amelanotic .f 20 to 1252 1 to 1233 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 1233/1233
(100 %)
0 diff
(100 %id)
BG492217 amelanotic melanoma, cell line, skin .f 436 to 1215 787 to 1   available from MGC,   787/787
(100 %)
15 diff
(98.1 %id)
BE326653 Kidney .f 681 to 1252 572 to 1       572/572
(100 %)
1 diff
(99.9 %id)
AI924400 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .f 869 to 1251 382 to 1       382/382
(100 %)
2 diff
(99.5 %id)
T12099   .f 972 to 1122 154 to 3       152/155
(98 %)
0 diff
(100 %id)
DB503452 hypothalamus .g 1 to 468 1 to 468   tiling clone,   468/468
(100 %)
2 diff
(99.6 %id)
CR995124 T-Lymphocytes .g 5 to 413 1 to 413       413/437
(94 %)
12 diff
(97.3 %id)
CN311647 embryonic stem cells, DMSO-treated H9 cellline .g 6 to 328 1 to 323       323/323
(100 %)
4 diff
(98.8 %id)
TI_43963817   .g 8 to 787 49 to 830       782/830
(94 %)
8 diff
(99.1 %id)
BM906006 ovary (pool of 3) .g 17 to 988 9 to 982 G15R A16R R17P P19G R20A ...     974/1084
(89 %)
34 diff
(96.9 %id)
BI520435 brain, medulla .g 21 to 787 1 to 768       768/768
(100 %)
3 diff
(99.7 %id)
BG106719 lymph, lymphoma, cell line .g 22 to 717 1 to 689       689/954
(72 %)
13 diff
(98.7 %id)
BI160664 epithelioid carcinoma cell line, Pancreas .g 22 to 785 1 to 778       778/954
(81 %)
39 diff
(96.0 %id)
BM544202 ovary (pool of 3) .g 22 to 972 16 to 972 G15R A16R R17P P19G R20A ...     957/1073
(89 %)
44 diff
(95.9 %id)
CB216561 normal endometrium, mid-secretory phase,cycle day 23, uterus .g 34 to 667 1 to 634       634/634
(100 %)
0 diff
(100 %id)
BQ642595 lymph, lymphoma, cell line .g 34 to 640 1 to 617       617/1019
(60 %)
25 diff
(97.6 %id)
CD675289 eye, lens .g 35 to 685 1 to 651       651/651
(100 %)
2 diff
(99.7 %id)
BG491609 amelanotic melanoma, cell line, skin .g 35 to 737 1 to 707   fully sequenced,   707/707
(100 %)
6 diff
(99.2 %id)
BQ642192 lymph, lymphoma, cell line .g 35 to 646 12 to 623       612/874
(70 %)
9 diff
(99.0 %id)
CN311651 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 36 to 534 1 to 499       499/499
(100 %)
4 diff
(99.2 %id)
CN483254 eye .g 36 to 619 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
BU522018 leiomyosarcoma, uterus .g 36 to 819 1 to 790       790/815
(96 %)
14 diff
(98.3 %id)
DA609483   .g 36 to 326 2 to 292   capped   291/291
(100 %)
0 diff
(100 %id)
BM914802 amelanotic melanoma, cell line, skin .g 37 to 834 1 to 808       808/1137
(71 %)
40 diff
(96.5 %id)
CN311649 embryonic stem cells, DMSO-treated H9 cellline .g 38 to 221 1 to 184       184/184
(100 %)
0 diff
(100 %id)
BQ669304 epidermoid carcinoma, cell line, salivary gland .g 39 to 905 23 to 894 exact     872/899
(96 %)
17 diff
(98.2 %id)
BQ673052 epidermoid carcinoma, cell line, salivary gland .g 40 to 894 1 to 859 exact     859/871
(98 %)
10 diff
(98.9 %id)
BM470517 leiomyosarcoma, uterus .g 41 to 848 1 to 810 K227R E228S K230N R231A S232A ...     810/1103
(73 %)
21 diff
(98.1 %id)
CN311653 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 42 to 229 1 to 188       188/188
(100 %)
0 diff
(100 %id)
BF310313 brain, neuroblastoma .g 42 to 717 1 to 678       678/929
(72 %)
16 diff
(98.3 %id)
BI198151 brain, neuroblastoma .g 42 to 760 1 to 745       623/1206
(51 %)
28 diff
(97.7 %id)
BM905894 leiomyosarcoma, uterus .g 42 to 1057 12 to 1030 exact     1019/1030
(98 %)
25 diff
(97.6 %id)
CR988025 T-Lymphocytes .g 42 to 710 1 to 671       671/681
(98 %)
9 diff
(98.7 %id)
BM475327 eye, retinoblastoma .g 44 to 705 1 to 669       669/1255
(53 %)
16 diff
(98.8 %id)
BQ068411 brain, neuroblastoma, cell line .g 45 to 882 19 to 865 L235F E236G N237E F238L S240E ...     847/1031
(82 %)
23 diff
(97.8 %id)
AK313816   .g 46 to 843 1 to 798 A22T L160F     798/798
(100 %)
3 diff
(99.7 %id)
BE314657 brain, neuroblastoma .g 46 to 923 1 to 888 P2L G15W A16G R17P R18T ...     888/1007
(88 %)
55 diff
(94.6 %id)
DA474201   .g 47 to 495 2 to 450   capped   449/453
(99 %)
2 diff
(99.6 %id)
BF316556 brain, neuroblastoma .g 47 to 808 1 to 748       748/768
(97 %)
38 diff
(95.1 %id)
BM450918 eye, retinoblastoma .g 47 to 777 1 to 737       737/807
(91 %)
9 diff
(98.9 %id)
BU528236 epidermoid carcinoma, cell line, lung .g 47 to 955 28 to 945 G3V R241Q R245P H253P L256F ...     918/949
(96 %)
28 diff
(97.1 %id)
DA792002 brain .g 47 to 597 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA741176   .g 48 to 571 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
CN311652 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 49 to 765 1 to 717       717/717
(100 %)
7 diff
(99.1 %id)
BM811145 amelanotic melanoma, cell line, skin .g 49 to 958 17 to 938 A4S L212P K213E S215I E216*     922/1045
(88 %)
33 diff
(96.9 %id)
BE410573 choriocarcinoma, placenta .g 50 to 574 1 to 527       527/530
(99 %)
6 diff
(98.9 %id)
BQ070670 brain, neuroblastoma, cell line .g 51 to 894 1 to 854 Q219P A223P R231P S232Q K233Q ...     854/1053
(81 %)
28 diff
(97.4 %id)
BQ882465 brain, neuroblastoma, cell line .g 51 to 860 1 to 817 F226V K230E K234E E236G N237E ...     817/867
(94 %)
24 diff
(97.3 %id)
BQ882449 brain, neuroblastoma, cell line .g 51 to 911 1 to 878 F226V E228G L229A K230E R231T ...     878/927
(94 %)
39 diff
(95.8 %id)
BQ228429 large cell carcinoma, lung .g 52 to 927 1 to 885 E216D Q219P L220V E236G N237E ...     885/885
(100 %)
22 diff
(97.6 %id)
BU189686 eye, retinoblastoma .g 52 to 881 1 to 833 K213X K227Q K249Q R251Q K258Q     833/857
(97 %)
10 diff
(98.9 %id)
BU156732 leiomyosarcoma, uterus .g 54 to 892 1 to 848 Q205X E224*     848/870
(97 %)
20 diff
(97.8 %id)
BE261098 brain, neuroblastoma .g 55 to 711 1 to 661       661/691
(95 %)
19 diff
(97.3 %id)
BF568459 epithelioid carcinoma cell line, Pancreas .g 55 to 619 1 to 565   fully sequenced,   565/565
(100 %)
1 diff
(99.9 %id)
BI855887 breast, mammary adenocarcinoma, cell line .g 55 to 842 39 to 835       797/847
(94 %)
23 diff
(97.3 %id)
TI_57186175   .g 55 to 842 93 to 889       797/901
(88 %)
23 diff
(97.5 %id)
BC011933 Pancreas, epithelioid carcinoma .g 56 to 1214 1 to 1159 exact tiling clone, available from MGC, AAA   1159/1159
(100 %)
0 diff
(100 %id)
NM_033112.2   .g 56 to 1214 1 to 1159 exact RefSeq, AAA   1159/1159
(100 %)
0 diff
(100 %id)
DR006652 Spleen .g 56 to 719 7 to 670       664/670
(99 %)
11 diff
(98.4 %id)
BQ918382 large cell carcinoma, lung .g 57 to 875 1 to 827 Q57H V109A E148Q K157N H159P ...     827/882
(93 %)
41 diff
(95.4 %id)
BU540869 epithelioid carcinoma cell line, Pancreas .g 57 to 905 1 to 850 G3V     850/850
(100 %)
2 diff
(99.8 %id)
CN311654 embryonic stem cells, DMSO-treated H9 cellline .g 60 to 593 1 to 534       534/534
(100 %)
5 diff
(99.1 %id)
BG422677 Kidney, renal cell adenocarcinoma .g 60 to 798 1 to 733       733/777
(94 %)
16 diff
(98.0 %id)
BM916844 amelanotic melanoma, cell line, skin .g 60 to 787 1 to 730       730/1190
(61 %)
19 diff
(98.5 %id)
BI438438 Pancreas, Purified pancreatic islet .g 61 to 646 1 to 587       587/587
(100 %)
4 diff
(99.4 %id)
BM473779 eye, retinoblastoma .g 65 to 931 1 to 872       872/1030
(84 %)
24 diff
(97.7 %id)
CR982492 T-Lymphocytes .g 66 to 894 7 to 833       827/833
(99 %)
8 diff
(99.1 %id)
CX787319 human embryonic stem cells .g 67 to 864 1 to 798       798/798
(100 %)
1 diff
(99.9 %id)
BU155021 melanotic melanoma, skin .g 68 to 690 1 to 629       629/1007
(62 %)
13 diff
(98.8 %id)
BE408876 choriocarcinoma, placenta .g 69 to 559 1 to 491       491/491
(100 %)
0 diff
(100 %id)
BE885573 leiomyosarcoma, uterus .g 69 to 587 1 to 515       515/918
(56 %)
10 diff
(99.0 %id)
BE884533 leiomyosarcoma, uterus .g 74 to 797 1 to 730       730/860
(84 %)
25 diff
(97.1 %id)
BE407929 choriocarcinoma, placenta .g 75 to 816 1 to 742       742/838
(88 %)
20 diff
(97.7 %id)
BQ879958 brain, neuroblastoma, cell line .g 76 to 879 53 to 863       811/999
(81 %)
26 diff
(97.4 %id)
BE795313 lung, small cell carcinoma .g 84 to 856 1 to 775       775/776
(99 %)
8 diff
(99.0 %id)
BE791541 lung, small cell carcinoma .g 85 to 1014 1 to 935       935/1048
(89 %)
44 diff
(95.9 %id)
BE791545 lung, small cell carcinoma .g 85 to 887 1 to 801       801/1106
(72 %)
14 diff
(98.8 %id)
BE795307 lung, small cell carcinoma .g 85 to 892 1 to 802       802/803
(99 %)
10 diff
(98.8 %id)
DA637242 Liver .g 87 to 569 2 to 486   capped   485/485
(100 %)
8 diff
(98.4 %id)
AW272268 Kidney .g 148 to 513 373 to 8       366/373
(98 %)
2 diff
(99.5 %id)
AA369668 placenta .g 176 to 425 1 to 250       250/250
(100 %)
6 diff
(97.6 %id)
CN311646 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 197 to 722 1 to 526       526/526
(100 %)
0 diff
(100 %id)
BQ053333 blood, natural killer cells, cell line .g 202 to 1210 1 to 1017       1017/1070
(95 %)
44 diff
(95.9 %id)
BI117561 lung, small cell carcinoma .g 205 to 1123 1 to 908       908/930
(97 %)
27 diff
(97.1 %id)
BI869510 adenocarcinoma, cell line, Liver .g 236 to 1155 1 to 920       920/929
(99 %)
42 diff
(95.5 %id)
TI_57228558   .g 236 to 1155 51 to 970       920/929
(99 %)
42 diff
(95.5 %id)
BU535631 adenocarcinoma, cell line, breast .g 245 to 1070 1 to 831       831/897
(92 %)
14 diff
(98.5 %id)
BU957122 adenocarcinoma, cell line, breast .g 245 to 1096 1 to 855       855/903
(94 %)
21 diff
(97.7 %id)
BM830881 stomach .g 257 to 789 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
CD239712 Pituitary .g 269 to 998 1 to 728       728/728
(100 %)
6 diff
(99.2 %id)
AA311304   .g 300 to 749 1 to 450       450/450
(100 %)
3 diff
(99.4 %id)
AF161371 blood .g 300 to 1214 1 to 914   AAA   914/914
(100 %)
4 diff
(99.6 %id)
BM551323 duodenal adenocarcinoma, cell line, small intestine .g 331 to 1218 5 to 902       898/923
(97 %)
23 diff
(97.6 %id)
AA488578   .g 334 to 745 1 to 411   fully sequenced,   410/410
(100 %)
5 diff
(98.8 %id)
AW886507 ovary .g 337 to 1046 725 to 16       710/725
(97 %)
7 diff
(99.1 %id)
BM759731 stomach .g 383 to 961 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
BM759767 stomach .g 383 to 493 1 to 110       110/110
(100 %)
1 diff
(99.1 %id)
BM825534 stomach .g 384 to 874 1 to 491       491/491
(100 %)
2 diff
(99.6 %id)
BM831038 stomach .g 384 to 962 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
BM839754 stomach .g 389 to 870 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
BF689227 eye, normal pigmented retinal epithelium .g 397 to 1161 769 to 2       766/827
(92 %)
12 diff
(98.6 %id)
TI_227713555   .g 405 to 1218 910 to 101   AAA   810/996
(81 %)
21 diff
(97.9 %id)
TI_154123757   .g 406 to 1213 899 to 93   AAA   807/968
(83 %)
9 diff
(99.1 %id)
BX328268   .g 428 to 1218 1 to 789       789/791
(99 %)
11 diff
(98.7 %id)
BQ882154 brain, neuroblastoma, cell line .g 480 to 1289 1 to 807       807/904
(89 %)
9 diff
(99.1 %id)
CA415698 Chondrosarcoma Cell line .g 486 to 1213 744 to 17   AAA   728/728
(100 %)
3 diff
(99.6 %id)
BF095491 uterus_tumor .g 496 to 792 299 to 3       297/299
(99 %)
2 diff
(99.4 %id)
CB155513 Liver .g 496 to 1094 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BU191298 ductal carcinoma, cell line, Pancreas .g 502 to 1212 1 to 714       714/747
(95 %)
3 diff
(99.6 %id)
BU535602 adenocarcinoma, cell line, breast .g 510 to 1214 1 to 706       706/932
(75 %)
7 diff
(99.3 %id)
BM978626 lung, Primary Lung Epithelial Cells .g 532 to 1211 697 to 19   AAA   679/679
(100 %)
1 diff
(99.9 %id)
BU631068 cell lines, Chondrosarcoma .g 545 to 1214 686 to 19   AAA   668/668
(100 %)
3 diff
(99.6 %id)
CB528962 Aveolar Macrophage, lung .g 545 to 1216 689 to 19   AAA   671/671
(100 %)
1 diff
(99.9 %id)
DA480904   .g 549 to 1107 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
TI_154128287   .g 549 to 1212 799 to 139       661/991
(66 %)
5 diff
(99.5 %id)
BU599904 mixed (pool of 40 RNAs) .g 552 to 1215 1 to 664       664/667
(99 %)
1 diff
(99.9 %id)
BF569089 epithelioid carcinoma cell line, Pancreas .g 557 to 1162 614 to 1   fully sequenced,   612/612
(100 %)
10 diff
(98.4 %id)
CD364523 Alveolar Macrophage, lung .g 558 to 1218 679 to 19   AAA   661/661
(100 %)
2 diff
(99.7 %id)
BU632039 cell lines, Chondrosarcoma .g 592 to 1218 645 to 19   AAA   627/627
(100 %)
0 diff
(100 %id)
BE620419 large cell carcinoma, undifferentiated, lung .g 611 to 1401 1 to 791       791/1155
(68 %)
33 diff
(97.2 %id)
AL119388 amygdala .g 614 to 1218 1 to 605       605/606
(99 %)
2 diff
(99.7 %id)
BQ636993 eye, retina .g 616 to 1219 1 to 604   AAA   604/604
(100 %)
1 diff
(99.9 %id)
BM797207 Ascites, stomach .g 621 to 1096 10 to 485       476/485
(98 %)
6 diff
(98.8 %id)
BG180031 adenocarcinoma, cell line, Prostate .g 630 to 1220 1 to 588       588/943
(62 %)
4 diff
(99.6 %id)
AW245088 lung, small cell carcinoma .g 648 to 1219 582 to 11   AAA   572/572
(100 %)
0 diff
(100 %id)
BM993630 lung, Metastatic Chondrosarcoma .g 651 to 1211 579 to 19   AAA   561/561
(100 %)
3 diff
(99.5 %id)
BG315232   .g 672 to 890 221 to 2       220/221
(99 %)
1 diff
(99.6 %id)
BG491850 amelanotic melanoma, cell line, skin .g 676 to 1167 505 to 1   fully sequenced,   505/505
(100 %)
18 diff
(96.5 %id)
BU158171 epidermoid carcinoma, cell line, salivary gland .g 679 to 1214 1 to 535   AAA   535/535
(100 %)
1 diff
(99.9 %id)
BQ675182 epidermoid carcinoma, cell line, salivary gland .g 679 to 1214 1 to 536   AAA   536/536
(100 %)
0 diff
(100 %id)
BQ671559 epidermoid carcinoma, cell line, salivary gland .g 679 to 1214 1 to 536   AAA   536/536
(100 %)
0 diff
(100 %id)
AA488439   .g 683 to 1220 541 to 4   fully sequenced,   538/541
(99 %)
1 diff
(99.9 %id)
BF434506 Kidney .g 698 to 1212 522 to 8       515/522
(98 %)
0 diff
(100 %id)
AV736122 cord Blood .g 707 to 1214 34 to 531   AAA   498/531
(93 %)
6 diff
(98.9 %id)
AI651130 pooled germ cell tumors .g 707 to 1217 511 to 1       511/512
(99 %)
0 diff
(100 %id)
BI467365 Pancreas, Purified pancreatic islet .g 708 to 1216 510 to 2       509/510
(99 %)
0 diff
(100 %id)
BM691718 eye, RPE and Choroid .g 714 to 1212 7 to 505   fully sequenced,   499/505
(98 %)
0 diff
(100 %id)
BM994567 lung, Metastatic Chondrosarcoma .g 716 to 1211 513 to 18   AAA   496/503
(98 %)
0 diff
(100 %id)
BM794245 Ascites, stomach .g 717 to 1219 1 to 503   AAA   503/503
(100 %)
1 diff
(99.9 %id)
AI033463 liver and spleen .g 732 to 1039 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AA558676 bone marrow, stem cells .g 734 to 1073 1 to 340       340/340
(100 %)
6 diff
(98.3 %id)
AW802449 uterus .g 735 to 1046 9 to 320       312/320
(97 %)
6 diff
(98.2 %id)
AW802452 uterus .g 735 to 1079 9 to 353       345/353
(97 %)
6 diff
(98.4 %id)
AW802550 uterus .g 735 to 1110 9 to 383       375/383
(97 %)
6 diff
(98.5 %id)
AW802554 uterus .g 735 to 1090 9 to 364       356/364
(97 %)
6 diff
(98.4 %id)
AW802562 uterus .g 735 to 1115 18 to 398       381/398
(95 %)
11 diff
(97.3 %id)
AW802593 uterus .g 735 to 1124 9 to 398       390/398
(97 %)
6 diff
(98.5 %id)
AW802601 uterus .g 735 to 1115 9 to 389       381/389
(97 %)
6 diff
(98.5 %id)
AW802605 uterus .g 735 to 1056 9 to 330       322/330
(97 %)
6 diff
(98.2 %id)
AW802606 uterus .g 735 to 1017 9 to 291       283/291
(97 %)
6 diff
(98.0 %id)
AA557988 bone marrow, stem cells .g 735 to 1078 1 to 344       344/344
(100 %)
4 diff
(98.9 %id)
CN311650 embryonic stem cells, cell lines H1, H7, andH9 .g 741 to 963 1 to 223       223/223
(100 %)
0 diff
(100 %id)
AA578098 bone marrow, stem cells .g 741 to 1114 42 to 415       374/415
(90 %)
8 diff
(98.1 %id)
BF208519 bladder, carcinoma, cell line .g 751 to 1211 1 to 457   AAA   457/457
(100 %)
9 diff
(98.1 %id)
AW300197 Kidney .g 755 to 1212 461 to 4       458/461
(99 %)
0 diff
(100 %id)
BF093796 uterus .g 757 to 1173 1 to 418       418/425
(98 %)
5 diff
(98.9 %id)
AW802596 uterus .g 760 to 1117 1 to 358       358/358
(100 %)
7 diff
(98.1 %id)
DB574687 hypothalamus .g 765 to 1211 1 to 447     Submitted on the opposite strand 447/447
(100 %)
0 diff
(100 %id)
BQ431060 embryonal carcinoma, cell line, testis .g 765 to 1334 1 to 577       577/1022
(56 %)
11 diff
(99.0 %id)
AW008258 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 769 to 1214 457 to 11   AAA   447/447
(100 %)
2 diff
(99.6 %id)
AI291338 placenta .g 773 to 1214 450 to 9       442/453
(97 %)
0 diff
(100 %id)
BE503225 pooled germ cell tumors .g 773 to 1218 449 to 4       446/449
(99 %)
0 diff
(100 %id)
BX108907 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 775 to 1218 459 to 15   AAA   445/445
(100 %)
1 diff
(99.8 %id)
BE503266 pooled germ cell tumors .g 780 to 1218 442 to 4       439/442
(99 %)
0 diff
(100 %id)
AI392928 B-cell, chronic lymphotic leukemia .g 790 to 1214 430 to 6       425/430
(98 %)
0 diff
(100 %id)
AI278483 placenta .g 792 to 1214 431 to 9       423/431
(98 %)
0 diff
(100 %id)
BE645469 Prostate .g 794 to 1213 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AW802558 uterus .g 795 to 1073 1 to 279       279/279
(100 %)
4 diff
(98.6 %id)
AA492526 thyroid .g 795 to 1213 428 to 10       419/428
(97 %)
0 diff
(100 %id)
AI887531 serous papillary carcinoma, high grade, 2pooled tumors, uterus .g 796 to 1211 435 to 20   AAA   416/416
(100 %)
4 diff
(99.1 %id)
AA858325 epithelium (cell line), Prostate .g 807 to 1214 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AI866917 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 811 to 1218 410 to 3       408/410
(99 %)
0 diff
(100 %id)
AI476126 lymph node, lymphoma, follicular mixed small and largecell .g 818 to 1212 399 to 5       395/399
(98 %)
0 diff
(100 %id)
AI627664 Kidney .g 825 to 1213 391 to 3       389/391
(99 %)
0 diff
(100 %id)
AA741460 germinal center B cell .g 833 to 1211 426 to 48   AAA   379/379
(100 %)
0 diff
(100 %id)
AW802446 uterus .g 858 to 1205 353 to 6       348/353
(98 %)
0 diff
(100 %id)
AI202975 pooled germ cell tumors .g 859 to 1213 362 to 8       355/362
(98 %)
0 diff
(100 %id)
AW016389   .g 859 to 1213 370 to 16   AAA   355/355
(100 %)
1 diff
(99.8 %id)
BQ011197 placenta .g 867 to 1217 369 to 19   AAA   351/351
(100 %)
1 diff
(99.8 %id)
DW465561 Liver .g 876 to 1216 17 to 357       341/357
(95 %)
6 diff
(98.4 %id)
AW594309 pooled germ cell tumors .g 882 to 1213 339 to 8       332/339
(97 %)
0 diff
(100 %id)
AW802531 uterus .g 884 to 1205 327 to 6       322/327
(98 %)
0 diff
(100 %id)
AI126658 uterus .g 900 to 1218 328 to 10       319/328
(97 %)
0 diff
(100 %id)
DA568785 whole embryo, mainly head .g 905 to 1607 2 to 704   tiling clone, capped   703/703
(100 %)
8 diff
(98.9 %id)
AA641083   .g 909 to 1214 319 to 14   AAA   306/306
(100 %)
0 diff
(100 %id)
BQ881174 brain, neuroblastoma, cell line .g 912 to 1630 21 to 741   tiling clone,   721/957
(75 %)
19 diff
(98.1 %id)
AI439283 lymph node, lymphoma, follicular mixed small and largecell .g 917 to 1219 317 to 15   AAA   303/303
(100 %)
1 diff
(99.7 %id)
AA644478 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 918 to 1218 310 to 10       301/310
(97 %)
0 diff
(100 %id)
DA055907 cerebellum .g 942 to 1428 2 to 489   capped   488/488
(100 %)
7 diff
(98.6 %id)
AW518315 lymph node, lymphoma, follicular mixed small and largecell .g 999 to 1219 233 to 11   AAA   223/223
(100 %)
2 diff
(99.2 %id)
CA503232 Human Lung Epithelial cells, lung .g 1014 to 1218 223 to 19   AAA   205/205
(100 %)
0 diff
(100 %id)
CA503329 Human Lung Epithelial cells, lung .g 1014 to 1218 223 to 19   AAA   205/205
(100 %)
0 diff
(100 %id)
AI219643 placenta .g 1084 to 1217 164 to 31   AAA   134/134
(100 %)
2 diff
(98.6 %id)
BM662339 eye, RPE and Choroid .g 1089 to 1208 140 to 21   fully sequenced,   120/140
(85 %)
0 diff
(100 %id)
FN055734 breast carcinoma .g 1092 to 1201 110 to 1     Submitted on the opposite strand 110/110
(100 %)
0 diff
(100 %id)
BU543156 carcinoma, cell line, Prostate .g 1363 to 2252 1 to 902   tiling clone,   902/902
(100 %)
28 diff
(96.9 %id)
CN272209 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 1591 to 2234 1 to 645   tiling clone,   645/645
(100 %)
15 diff
(97.7 %id)
BM480132 eye, retinoblastoma .g 1634 to 2565 25 to 969   tiling clone, AAA   945/1090
(86 %)
6 diff
(99.5 %id)
DB355344 whole embryo, mainly head .g 2174 to 2676 505 to 1   tiling clone,   505/505
(100 %)
12 diff
(97.7 %id)
BX643503   .g 2210 to 2672 1 to 465   tiling clone, AAA   465/465
(100 %)
9 diff
(98.1 %id)
BI256358 cervical carcinoma cell line, cervix .h 1 to 722 1 to 742 A40G F84L D85M D86I L87C ... tiling clone,   742/1099
(67 %)
27 diff
(97.6 %id)
DA867100 Prostate .i 1 to 527 2 to 529   tiling clone, capped   528/528
(100 %)
1 diff
(99.9 %id)
BE815243 breast_normal .i 365 to 691 1 to 327   tiling clone,   327/331
(98 %)
13 diff
(96.1 %id)
T12100   .i 641 to 814 1 to 173   tiling clone,   173/173
(100 %)
3 diff
(98.3 %id)
DA380650 thalamus .j 1 to 565 2 to 561 G15R A16R R17P P19G R20A ... tiling clone, capped   560/560
(100 %)
5 diff
(99.2 %id)
CA843735 Pancreas, Purified pancreatic islet .j 92 to 584 1 to 493   tiling clone, fully sequenced,   493/493
(100 %)
0 diff
(100 %id)
AW963030   .j 133 to 568 1 to 437       437/441
(99 %)
6 diff
(98.7 %id)
AI924818 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .j 249 to 681 433 to 1       433/433
(100 %)
0 diff
(100 %id)
BX481739   .j 357 to 910 1 to 552       552/552
(100 %)
5 diff
(99.1 %id)
CA843488 Pancreas, Purified pancreatic islet .j 554 to 1054 536 to 38   tiling clone, fully sequenced,   499/536
(93 %)
6 diff
(98.9 %id)
AW883646 ovary .j 743 to 1030 14 to 299   tiling clone,   286/299
(95 %)
6 diff
(98.0 %id)
DA481149   .k 1 to 555 2 to 556 exact tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
AA258457 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l 1 to 481 1 to 477   tiling clone, fully sequenced,   477/477
(100 %)
5 diff
(99.0 %id)
AA258387 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l 451 to 914 463 to 1   tiling clone, fully sequenced,   463/463
(100 %)
2 diff
(99.6 %id)
AI796627 Kidney .l 824 to 1334 511 to 1   tiling clone,   511/511
(100 %)
3 diff
(99.5 %id)
BG758182 B-cells, primary B-cells from tonsils (cell line) .m 1 to 754 1 to 754 E56D E78D K79D E80R G81R ... tiling clone,   754/754
(100 %)
8 diff
(99.0 %id)
DA875733 Prostate .m 109 to 664 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
CB218317 mandible, pooled .n 1 to 491 528 to 38   tiling clone, AAA   491/491
(100 %)
7 diff
(98.6 %id)
BF438961 pooled .n 371 to 684 317 to 4       314/317
(99 %)
0 diff
(100 %id)
BM930715 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n 399 to 679 1 to 281   AAA   281/281
(100 %)
0 diff
(100 %id)
AI424742 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 402 to 687 286 to 1   tiling clone,   286/286
(100 %)
0 diff
(100 %id)
AW082155 pooled .n 518 to 685 172 to 4       169/172
(98 %)
0 diff
(100 %id)
AA682343 schizophrenic brain S-11 frontal lobe .o 1 to 441 1 to 441   tiling clone, Submitted on the opposite strand 441/441
(100 %)
0 diff
(100 %id)
BM480409 duodenal adenocarcinoma, cell line, small intestine .o 6 to 623 1 to 618       618/1026
(60 %)
15 diff
(98.6 %id)
BF371833 prostate_normal .o 337 to 661 346 to 23       324/352
(92 %)
0 diff
(100 %id)
DA276182 corpus callosum .o 439 to 1014 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
BQ340081 nervous_normal .o 635 to 1183 18 to 564 exact tiling clone,   547/564
(96 %)
6 diff
(99.0 %id)
BF818103 colon_ins .p 1 to 224 223 to 1   tiling clone, Submitted on the opposite strand 223/225
(99 %)
10 diff
(95.6 %id)
CN270474 embryonic stem cells, DMSO-treated H9 cellline .p 37 to 779 1 to 745 exact tiling clone,   745/745
(100 %)
1 diff
(99.9 %id)
BM476154 duodenal adenocarcinoma, cell line, small intestine .p 173 to 1144 39 to 1020   AAA   982/1119
(87 %)
43 diff
(96.2 %id)
BU733482 eye, optic nerve .p 215 to 881 685 to 19   tiling clone, AAA   667/667
(100 %)
0 diff
(100 %id)
BQ424924 melanotic melanoma, skin .p 345 to 1187 1 to 859       859/911
(94 %)
23 diff
(97.5 %id)
AA164215   .p 354 to 711 1 to 359   fully sequenced,   359/359
(100 %)
1 diff
(99.8 %id)
BE789574 large cell carcinoma, lung .p 360 to 968 1 to 607       607/832
(72 %)
4 diff
(99.6 %id)
AI338650 lung .p 408 to 877 472 to 3       470/472
(99 %)
0 diff
(100 %id)
BU581467 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .p 411 to 990 10 to 589       580/589
(98 %)
6 diff
(99.0 %id)
AA780705   .p 430 to 874 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
AV721626 hypothalamus .p 456 to 876 1 to 421   AAA   421/421
(100 %)
1 diff
(99.8 %id)
BE644974 pooled .p 534 to 1073 543 to 4       540/543
(99 %)
0 diff
(100 %id)
BM712915 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 593 to 876 1 to 284   AAA   284/284
(100 %)
0 diff
(100 %id)
BM712926 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 593 to 876 1 to 284   AAA   284/284
(100 %)
0 diff
(100 %id)
BF509498   .p 613 to 1066 471 to 18   AAA   454/454
(100 %)
0 diff
(100 %id)
CA427373 Cell Line, Chondrosarcoma .p 614 to 1230 633 to 19   tiling clone, AAA   615/615
(100 %)
2 diff
(99.7 %id)
BU581164 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .p 656 to 1229 573 to 1       573/575
(99 %)
1 diff
(99.9 %id)
AA164216   .p 681 to 1069 393 to 1   fully sequenced,   393/393
(100 %)
3 diff
(99.3 %id)
AW515799 pooled germ cell tumors .p 697 to 1227 531 to 1       531/531
(100 %)
2 diff
(99.7 %id)
AF127172 lung .p 707 to 874 168 to 1       168/168
(100 %)
0 diff
(100 %id)
BF439140 pooled .p 719 to 1222 515 to 12   AAA   504/504
(100 %)
7 diff
(98.7 %id)
AI797387 pooled .p 730 to 1227 498 to 1       498/498
(100 %)
0 diff
(100 %id)
AI343960 colon, colon tumor, RER+ .p 735 to 1067 333 to 1       333/334
(99 %)
0 diff
(100 %id)
BF196941 pooled .p 773 to 1205 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AI814047 adenocarcinoma, Pancreas .p 786 to 1222 439 to 1       439/439
(100 %)
7 diff
(98.5 %id)
AI203523 heart .p 883 to 1228 348 to 3       346/348
(99 %)
0 diff
(100 %id)
BU539835 adenocarcinoma, cell line, breast .q 1 to 799 1 to 797 exact tiling clone,   797/896
(88 %)
12 diff
(98.7 %id)
AA326825 brain, cerebellum .r 1 to 317 1 to 317   tiling clone,   317/317
(100 %)
0 diff
(100 %id)
BM989115 Bone, Subchondral Bone .r 95 to 756 679 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (15/18 A in genome downstream of last aligned base) 661/661
(100 %)
4 diff
(99.4 %id)
BM721088 eye, fetal eye .s-u 1 to 691 46 to 731 exact tiling clone, fully sequenced,   686/731
(93 %)
6 diff
(99.2 %id)
BM679520 eye, fetal eye .s-u 569 to 691 141 to 19   tiling clone, fully sequenced, AAA   123/123
(100 %)
1 diff
(99.2 %id)
BE674000 carcinoid, lung .t-u 1 to 363 1 to 364 exact tiling clone, Submitted on the opposite strand 364/364
(100 %)
2 diff
(99.5 %id)
BQ055094 lymph, lymphoma, cell line .t-u 1 to 622 24 to 644 exact     621/1134
(54 %)
12 diff
(99.0 %id)
CA843218 Pancreas, Purified pancreatic islet .t-u 11 to 361 1 to 351 exact tiling clone, fully sequenced,   351/351
(100 %)
0 diff
(100 %id)
BF818121 colon_ins .t-u 150 to 381 234 to 4 N11H   Submitted on the opposite strand 231/234
(98 %)
12 diff
(94.9 %id)
CA843970 Pancreas, Purified pancreatic islet .t-u 331 to 684 354 to 1   tiling clone, fully sequenced,   354/354
(100 %)
1 diff
(99.8 %id)
DA434760 tongue, tumor tissue .u 1 to 497 2 to 498   tiling clone, capped   497/497
(100 %)
0 diff
(100 %id)
DA104494 cerebellum .u 99 to 653 2 to 556 exact tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DA092757 cerebellum .u 118 to 427 2 to 311   capped   310/310
(100 %)
0 diff
(100 %id)
DA556396   .va 1 to 572 6 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
CA394980 eye, RPE/choroid .va 14 to 502 1 to 489       489/489
(100 %)
0 diff
(100 %id)
DA266559 caudate nucleus .vb 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
AI017251 Kidney .vc 1 to 484 484 to 1 exact tiling clone,   484/484
(100 %)
0 diff
(100 %id)
BF840640 head_neck .vd-u 1 to 481 1 to 482 exact tiling clone,   482/482
(100 %)
2 diff
(99.6 %id)
BQ002168 Chondrosarcoma, Left Pelvis .ve-u 1 to 466 463 to 1 R54G R58G G60R R63G G64H ... tiling clone,   463/463
(100 %)
3 diff
(99.4 %id)
H17333 whole brain .vf-u 1 to 347 354 to 3 Q11X L19X P37R A38X A39P ... tiling clone,   352/354
(99 %)
0 diff
(100 %id)
BF928841 nervous_tumor Gene RRP36andKLC4, variant not shown         Submitted on the opposite strand    
AV656071 corresponding non cancerous liver tissue Gene RRP36andKLC4, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
150 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s-u, .t-u, .u, .va, .vb, .vc, .vd-u, .ve-u, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI