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Gene KIFAP3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
487 supporting clones for gene KIFAP3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB494177 hypothalamus .a 1 to 502 3 to 504       504/504
(100 %)
2 diff
(99.7 %id)
DB503992 hypothalamus .a 1 to 483 3 to 485       485/485
(100 %)
6 diff
(98.8 %id)
BG707718 brain, hypothalamus .a 1 to 766 8 to 772       766/772
(99 %)
19 diff
(97.6 %id)
BI602758 brain, hypothalamus .a 1 to 592 8 to 606       600/723
(82 %)
16 diff
(97.8 %id)
BI600930 brain, hypothalamus .a 1 to 596 8 to 608       602/804
(74 %)
15 diff
(98.2 %id)
TI_45212471   .a 1 to 592 94 to 692       600/809
(74 %)
16 diff
(98.1 %id)
TI_45214210   .a 1 to 698 94 to 800       708/890
(79 %)
28 diff
(96.9 %id)
DA119935 cerebellum .a 1 to 560 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA144269 amygdala .a 1 to 556 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA496031 brain .a 1 to 561 2 to 562   tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
NM_014970.2   .a 3 to 2999 1 to 2997 exact RefSeq,   2997/2997
(100 %)
1 diff
(100.0 %id)
TI_44166756   .a 21 to 626 81 to 687       607/687
(88 %)
7 diff
(99.0 %id)
DA205736 brain .a 25 to 612 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA531987 brain .a 25 to 630 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
BI548735 brain, hippocampus .a 25 to 626 1 to 603       603/603
(100 %)
4 diff
(99.4 %id)
DA309952 hippocampus .a 29 to 592 2 to 565   capped   564/565
(99 %)
0 diff
(100 %id)
DA508000 brain .a 29 to 596 2 to 569   capped, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 568/579
(98 %)
3 diff
(99.5 %id)
BI547889 brain, hippocampus .a 31 to 685 1 to 654       654/654
(100 %)
7 diff
(99.0 %id)
TI_44169251   .a 36 to 685 84 to 732       649/732
(88 %)
7 diff
(99.1 %id)
DB442552 testis .a 41 to 489 1 to 447       449/448
(100 %)
11 diff
(97.6 %id)
DB450234 testis .a 41 to 486 1 to 444       446/445
(100 %)
9 diff
(98.0 %id)
DB479359 hippocampus .a 41 to 510 1 to 470       470/470
(100 %)
2 diff
(99.6 %id)
BG720113 testis .a 41 to 589 1 to 558       558/720
(77 %)
21 diff
(97.1 %id)
BG724043 testis .a 41 to 589 1 to 564       564/692
(81 %)
28 diff
(96.0 %id)
DA259511 caudate nucleus .a 42 to 604 2 to 564   capped   563/563
(100 %)
7 diff
(98.8 %id)
DA386786 thalamus .a 42 to 615 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA444684 tongue, tumor tissue .a 44 to 626 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB476813 hippocampus .a 44 to 550 1 to 507       507/507
(100 %)
3 diff
(99.5 %id)
DA161479 amygdala .a 45 to 609 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA507663 brain .a 45 to 569 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA519443 brain .a 45 to 608 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB028805 testis .a 45 to 622 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BC028679 testis .a 46 to 2997 1 to 2952 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2952/2952
(100 %)
2 diff
(100.0 %id)
DB458658 testis .a 46 to 523 1 to 476       476/476
(100 %)
2 diff
(99.6 %id)
CB959586 Human Placenta, placenta .a 46 to 758 28 to 744       717/748
(95 %)
11 diff
(98.6 %id)
CF594235 Human Placenta, placenta .a 46 to 841 29 to 825       797/826
(96 %)
9 diff
(99.0 %id)
DA076108 cerebellum .a 47 to 592 2 to 547   capped   546/547
(99 %)
0 diff
(100 %id)
DA145161 amygdala .a 47 to 619 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA202076 brain .a 47 to 572 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DA352561 substantia nigra .a 47 to 416 2 to 371   capped   370/370
(100 %)
0 diff
(100 %id)
DA492174 brain .a 47 to 613 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA520637 brain .a 47 to 620 2 to 573   capped   572/573
(99 %)
4 diff
(99.4 %id)
DA533214 brain .a 47 to 609 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA704655   .a 47 to 536 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
DA751115   .a 47 to 611 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA794631 brain .a 47 to 608 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB084273 testis .a 47 to 627 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB179603 kidney, tumor tissue .a 47 to 594 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DB282970 uterus .a 47 to 594 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB100383 testis .a 50 to 630 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
EC492890 Prostate .a 54 to 152 9 to 105       97/105
(92 %)
6 diff
(94.3 %id)
CN425762 embryonic stem cells, cell lines H1, H7, andH9 .a 60 to 306 1 to 247       247/258
(95 %)
1 diff
(99.7 %id)
DB444932 testis .a 60 to 399 1 to 338       338/338
(100 %)
16 diff
(95.3 %id)
BM799533 eye, retinoblastoma .a 60 to 1089 1 to 1037       1037/1072
(96 %)
24 diff
(97.8 %id)
DA686708   .a 65 to 596 2 to 534   capped   533/536
(99 %)
5 diff
(99.1 %id)
BI667449 brain, hypothalamus .a 66 to 790 1 to 733       733/778
(94 %)
22 diff
(97.2 %id)
TI_44343407   .a 71 to 790 92 to 819       728/864
(84 %)
22 diff
(97.5 %id)
DA514279 brain .a 72 to 613 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BP210232 cerebellum .a 76 to 658 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP247350 Kidney .a 76 to 654 1 to 579       579/583
(99 %)
5 diff
(99.2 %id)
BP360857 thalamus .a 76 to 648 1 to 573       573/582
(98 %)
2 diff
(99.7 %id)
DA136471 alzheimer cortex .a 77 to 619 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA155335 amygdala .a 77 to 641 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA175229 amygdala .a 77 to 637 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA387182 thalamus .a 77 to 681 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DA409259 thalamus .a 77 to 630 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AL036456 brain .a 77 to 663 1 to 590       590/590
(100 %)
5 diff
(99.2 %id)
DA483300 brain .a 77 to 1014 2 to 946   capped   945/946
(99 %)
18 diff
(98.1 %id)
DA490408 brain .a 77 to 639 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA505493 brain .a 77 to 630 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA526665 brain .a 77 to 630 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB471160 hippocampus .a 77 to 552 1 to 476       476/476
(100 %)
11 diff
(97.7 %id)
DA707738   .a 77 to 652 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
DA741800   .a 77 to 630 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA772876 brain .a 77 to 523 2 to 448   capped   447/447
(100 %)
0 diff
(100 %id)
DA774962 brain .a 77 to 658 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BP358851 mammary gland .a 77 to 658 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA183904 amygdala .a 78 to 546 2 to 470   capped   469/469
(100 %)
4 diff
(99.2 %id)
DA397743 thalamus .a 78 to 648 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA520197 brain .a 78 to 639 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA525318 brain .a 78 to 637 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA741146   .a 78 to 592 2 to 515   capped   514/514
(100 %)
3 diff
(99.5 %id)
DA770962 brain .a 78 to 637 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BP344633 synovial membrane .a 78 to 659 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB167061 kidney, tumor tissue .a 79 to 647 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DA125790 cerebellum .a 80 to 648 2 to 570   capped   569/572
(99 %)
2 diff
(99.7 %id)
DA497103 brain .a 80 to 650 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA502033 brain .a 80 to 644 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA875505 Prostate .a 80 to 651 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DW435582 Liver .a 84 to 326 14 to 255       242/255
(94 %)
6 diff
(97.7 %id)
U59919 brain .a 86 to 2733 1 to 2648 Q91L     2648/2648
(100 %)
6 diff
(99.8 %id)
DB175606 kidney, tumor tissue .a 88 to 669 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AK315586 placenta .a 89 to 2652 1 to 2564 exact     2564/2564
(100 %)
1 diff
(100.0 %id)
AU279595   .a 89 to 655 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
BP316067 pericardium .a 89 to 610 1 to 522   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 522/582
(89 %)
4 diff
(99.4 %id)
DB090685 testis .a 89 to 652 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA126136 cerebellum .a 90 to 683 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA146512 amygdala .a 90 to 654 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA208272 brain .a 90 to 671 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA300295 hippocampus .a 90 to 668 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA341078 substantia nigra .a 90 to 630 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA367141 subthalamic nucleus .a 90 to 641 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA402563 thalamus .a 90 to 685 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA483627 brain .a 90 to 956 2 to 865   capped   866/865
(100 %)
16 diff
(98.2 %id)
DA485404 brain .a 90 to 650 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA506705 brain .a 90 to 637 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA509813 brain .a 90 to 673 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA512971 brain .a 90 to 596 2 to 508   capped, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 507/517
(98 %)
3 diff
(99.5 %id)
DA518431 brain .a 90 to 639 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA521499 brain .a 90 to 639 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA685202   .a 90 to 621 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA688669   .a 90 to 622 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA715552   .a 90 to 670 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA739006   .a 90 to 640 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA745454   .a 90 to 672 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA772230 brain .a 90 to 639 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA773156 brain .a 90 to 672 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA791842 brain .a 90 to 636 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA798007 brain .a 90 to 624 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA860483 placenta .a 90 to 639 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB076750 testis .a 90 to 623 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB166610 kidney, tumor tissue .a 90 to 634 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB178897 kidney, tumor tissue .a 90 to 648 2 to 561   capped   560/566
(98 %)
4 diff
(99.3 %id)
DB475386 hippocampus .a 91 to 566 1 to 474       474/474
(100 %)
2 diff
(99.6 %id)
DB494635 hypothalamus .a 91 to 589 1 to 499       499/499
(100 %)
1 diff
(99.8 %id)
DB497138 hypothalamus .a 91 to 577 1 to 487       487/487
(100 %)
0 diff
(100 %id)
DA263547 caudate nucleus .a 92 to 644 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA528224 brain .a 92 to 703 2 to 613   capped   612/612
(100 %)
2 diff
(99.7 %id)
DB254273 uterus .a 92 to 618 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
AL534322 brain, fetal brain .a 99 to 1114 1 to 1009       1009/1009
(100 %)
9 diff
(99.2 %id)
DA772689 brain .a 99 to 685 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA773039 brain .a 106 to 695 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA663816   .a 107 to 668 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AL539782 brain, fetal brain .a 109 to 1011 1 to 903       901/903
(99 %)
7 diff
(99.3 %id)
DA386292 thalamus .a 115 to 704 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
AU309843 neuroblastoma .a 116 to 682 17 to 583       567/567
(100 %)
0 diff
(100 %id)
BX440773 brain, fetal brain .a 117 to 1010 1 to 916       718/916
(78 %)
17 diff
(98.2 %id)
DA527019 brain .a 118 to 679 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA683900   .a 118 to 495 2 to 382   capped   381/381
(100 %)
3 diff
(99.3 %id)
DA691870   .a 119 to 677 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
CN425761 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 120 to 565 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
AU117042 whole embryo, mainly head .a 120 to 889 2 to 777   capped   776/785
(98 %)
10 diff
(98.8 %id)
BM008306 Spleen .a 121 to 491 1 to 377       377/648
(58 %)
10 diff
(98.5 %id)
BG900965 cartilage .a 123 to 715 85 to 675       591/603
(98 %)
6 diff
(99.1 %id)
DB250883 uterus .a 126 to 670 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA184430 amygdala .a 128 to 682 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BG772636 testis .a 128 to 831 1 to 705       703/705
(99 %)
7 diff
(99.1 %id)
BI464677 testis .a 128 to 952 1 to 837       741/898
(82 %)
28 diff
(96.9 %id)
DA777744 brain .a 128 to 704 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB177961 kidney, tumor tissue .a 128 to 698 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BG700962 brain, hippocampus .a 131 to 836 6 to 711       706/711
(99 %)
10 diff
(98.6 %id)
DA503270 brain .a 132 to 687 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
BM547255 ovary (pool of 3) .a 132 to 1115 21 to 1002       982/1115
(88 %)
38 diff
(96.6 %id)
DA707308   .a 132 to 706 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA776277 brain .a 132 to 714 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA126612 cerebellum .a 133 to 706 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DB480285 hippocampus .a 133 to 630 1 to 498       498/498
(100 %)
4 diff
(99.2 %id)
DA522444 brain .a 134 to 703 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
CN425758 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 135 to 666 1 to 532       532/532
(100 %)
0 diff
(100 %id)
DB468330 hippocampus .a 136 to 569 1 to 433       433/433
(100 %)
2 diff
(99.6 %id)
BM811619 ovary (pool of 3) .a 137 to 938 12 to 813       802/1092
(73 %)
18 diff
(98.4 %id)
CN425760 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 142 to 799 1 to 658       658/660
(99 %)
6 diff
(99.1 %id)
BG700955 brain, hippocampus .a 142 to 935 1 to 792       792/803
(98 %)
17 diff
(97.9 %id)
DA994345 synovial membrane tissue from rheumatioidarthritis .a 151 to 669 22 to 540   capped   519/539
(96 %)
6 diff
(98.9 %id)
AU100070   .a 152 to 451 1 to 300       300/300
(100 %)
0 diff
(100 %id)
BP291847 lung .a 152 to 734 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA509132 brain .a 153 to 717 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA534000 brain .a 153 to 726 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA645626 mammary gland .a 153 to 939 2 to 788   capped   787/787
(100 %)
3 diff
(99.7 %id)
DB198262 trachea .a 153 to 729 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA387978 thalamus .a 154 to 726 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AL703123 human skeletal muscle .a 154 to 350 1 to 197       197/197
(100 %)
6 diff
(97.0 %id)
BF247131 brain, glioblastoma .a 154 to 648 1 to 513       508/806
(63 %)
41 diff
(95.0 %id)
DA752172   .a 155 to 742 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA497016 brain .a 156 to 717 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AU132295   .a 156 to 1014 2 to 862   capped   861/890
(96 %)
5 diff
(99.5 %id)
DB458462 testis .a 157 to 631 1 to 475       475/475
(100 %)
0 diff
(100 %id)
AI671532 pooled germ cell tumors .a 158 to 596 442 to 4       439/442
(99 %)
0 diff
(100 %id)
DA352837 substantia nigra .a 162 to 729 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA741224   .a 162 to 724 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA742276   .a 162 to 685 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA134395 alzheimer cortex .a 165 to 718 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA202941 brain .a 165 to 733 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA293234 hippocampus .a 165 to 733 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA352815 substantia nigra .a 165 to 738 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA513912 brain .a 165 to 733 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB483162 hippocampus .a 165 to 659 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
BI548002 brain, hippocampus .a 165 to 709 6 to 550       545/550
(99 %)
8 diff
(98.6 %id)
CV570683 cornea, eye .a 165 to 800 1 to 636       636/636
(100 %)
0 diff
(100 %id)
DA993417 synovial membrane tissue from rheumatioidarthritis .a 165 to 710 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA186162 amygdala .a 167 to 724 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA558302   .a 167 to 737 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA712953   .a 167 to 704 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA199922 brain .a 168 to 753 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA787380 brain .a 171 to 753 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB145293 thymus .a 173 to 724 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA518423 brain .a 195 to 748 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BI549251 brain, hippocampus .a 207 to 691 1 to 484       484/484
(100 %)
8 diff
(98.4 %id)
TI_44167379   .a 212 to 691 68 to 546       479/546
(87 %)
11 diff
(98.0 %id)
DN990377 brain, whole brain .a 214 to 874 11 to 671       661/671
(98 %)
6 diff
(99.2 %id)
DA475599   .a 216 to 790 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA775221 brain .a 216 to 800 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BP383263 ilea mucosa .a 220 to 970 1 to 761       719/953
(75 %)
29 diff
(97.0 %id)
DB066940 testis .a 223 to 708 2 to 487   capped   486/486
(100 %)
0 diff
(100 %id)
AK026471 ileal mucosa .a 224 to 2997 1 to 2774 V29F tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2774/2774
(100 %)
7 diff
(99.8 %id)
CD684164 normal nasopharynx .a 224 to 334 17 to 127       111/127
(87 %)
6 diff
(95.3 %id)
DA374397 thalamus .a 227 to 770 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
AW016428   .a 227 to 606 384 to 4   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 379/385
(98 %)
1 diff
(99.8 %id)
AU129644   .a 241 to 888 2 to 651   capped   650/820
(79 %)
9 diff
(99.0 %id)
DA070911 cerebellum .a 243 to 813 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB176940 kidney, tumor tissue .a 244 to 796 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
TI_1948141939   .a 273 to 1015 128 to 868       741/1287
(57 %)
18 diff
(98.7 %id)
TI_1948141940   .a 273 to 1015 122 to 865       744/1100
(67 %)
18 diff
(98.4 %id)
TI_1948142266   .a 273 to 888 146 to 761       616/1340
(45 %)
12 diff
(99.2 %id)
TI_1948142267   .a 273 to 1116 123 to 966       844/1209
(69 %)
13 diff
(99.0 %id)
TI_1948142610   .a 273 to 888 133 to 749       617/1366
(45 %)
14 diff
(99.0 %id)
TI_1948142611   .a 273 to 1294 123 to 1139       1017/1162
(87 %)
49 diff
(95.8 %id)
TI_1948142948   .a 273 to 1012 127 to 865     Submitted on the opposite strand 739/1375
(53 %)
20 diff
(98.6 %id)
TI_1948142949   .a 273 to 1013 110 to 852     Submitted on the opposite strand 743/1436
(51 %)
33 diff
(97.8 %id)
CV024317 mixed .a 274 to 848 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
CN425759 embryonic stem cells, cell lines H1, H7, andH9 .a 278 to 925 1 to 650       650/650
(100 %)
2 diff
(99.7 %id)
AA326255 brain, cerebellum .a 291 to 703 1 to 413       413/413
(100 %)
0 diff
(100 %id)
AL526396 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 304 to 1114 1 to 811       811/811
(100 %)
5 diff
(99.4 %id)
DA556139   .a 306 to 551 322 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BJ992675 hepatoblastoma .a 350 to 949 1 to 600       600/600
(100 %)
1 diff
(99.9 %id)
AI205054 schizophrenic brain S-11 frontal lobe .a 351 to 768 1 to 418     Submitted on the opposite strand 418/418
(100 %)
7 diff
(98.4 %id)
AL589427 human spinal cord .a 404 to 705 1 to 302       302/302
(100 %)
0 diff
(100 %id)
CD244195 testis .a 445 to 1174 23 to 759       737/935
(78 %)
19 diff
(98.0 %id)
BP200155 amygdala .a 512 to 1092 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA155580 amygdala .a 512 to 1081 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA479667   .a 551 to 1101 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA524231 brain .a 579 to 1144 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA524243 brain .a 579 to 1149 2 to 572   capped   571/572
(99 %)
1 diff
(99.9 %id)
CB129965 Liver .a 597 to 1232 1 to 635       635/635
(100 %)
2 diff
(99.7 %id)
DA150340 amygdala .a 601 to 1091 2 to 494   capped   493/493
(100 %)
8 diff
(98.4 %id)
AU252856 neuroblastoma .a 605 to 1292 1 to 691       689/700
(98 %)
13 diff
(98.2 %id)
TI_149282900   .a 610 to 1015 553 to 145       409/892
(45 %)
0 diff
(100 %id)
BU679959 lung, Primary Lung Epithelial Cells .a 610 to 1015 475 to 67   AAA   409/465
(87 %)
0 diff
(100 %id)
CN402743 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 628 to 1052 1 to 425       425/425
(100 %)
0 diff
(100 %id)
DA354811 substantia nigra .a 651 to 1171 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
BP356261   .a 676 to 1254 1 to 581       581/581
(100 %)
5 diff
(99.2 %id)
BP212474 cerebrum .a 677 to 1255 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
BQ432660 testis .a 742 to 1236 1 to 508       508/938
(54 %)
16 diff
(98.3 %id)
DA997923   .a 784 to 1344 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA551767   .a 789 to 1309 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
BG121993 adenocarcinoma, cell line, Liver .a 810 to 1163 1 to 356       356/455
(78 %)
3 diff
(99.4 %id)
DA178113 amygdala .a 858 to 1399 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA303759 hippocampus .a 870 to 1424 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA267312 caudate nucleus .a 881 to 1442 8 to 570   capped   563/563
(100 %)
2 diff
(99.7 %id)
BX354671 Neuroblastoma Cot 25-normalized .a 900 to 1942 1 to 1038       1038/1038
(100 %)
14 diff
(98.7 %id)
BX385716 Neuroblastoma Cot 25-normalized .a 903 to 1615 1 to 710       710/710
(100 %)
26 diff
(96.4 %id)
BU838507 dorsal root ganglia .a 951 to 1780 24 to 855       832/967
(86 %)
28 diff
(97.2 %id)
DA746722   .a 954 to 1515 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA691828   .a 959 to 1339 189 to 569   capped   381/568
(67 %)
7 diff
(98.8 %id)
CB152044 brain .a 1064 to 1663 1 to 600       600/600
(100 %)
1 diff
(99.9 %id)
DA261835 caudate nucleus .a 1066 to 1635 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
AU126270   .a 1109 to 1584 314 to 799   capped   489/805
(60 %)
16 diff
(98.1 %id)
BP370784 testis .a 1126 to 1698 1 to 572       572/572
(100 %)
6 diff
(99.0 %id)
DA396920 thalamus .a 1133 to 1727 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
CN402741 embryonic stem cells, DMSO-treated H9 cellline .a 1136 to 1572 9 to 445       437/445
(98 %)
6 diff
(98.7 %id)
BF970323 adrenal cortex carcinoma, cell line, adrenal gland .a 1149 to 1864 1 to 720       720/842
(85 %)
10 diff
(98.9 %id)
DA172224 amygdala .a 1179 to 1728 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
CK005820 brain/CNS, Human Brain - Frontal Cortex .a 1181 to 1838 1 to 666       635/672
(94 %)
43 diff
(93.7 %id)
CF552089 Pooled muscle (cardiac and skeletal) .a 1207 to 2056 1 to 850       850/850
(100 %)
4 diff
(99.6 %id)
BM788010 stomach .a 1225 to 1780 1 to 555       555/559
(99 %)
2 diff
(99.7 %id)
DA131693 alzheimer cortex .a 1236 to 1547 2 to 313   capped   312/312
(100 %)
0 diff
(100 %id)
CF619242 Pooled Chondrosarcoma Tumor cells .a 1272 to 2132 1 to 862       862/863
(99 %)
17 diff
(98.1 %id)
BX952059   .a 1300 to 1875 1 to 576       576/576
(100 %)
0 diff
(100 %id)
BP307233 brain .a 1347 to 1927 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
CN402742 embryonic stem cells, DMSO-treated H9 cellline .a 1350 to 1858 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BE814454 breast_normal .a 1451 to 1673 221 to 4       218/223
(97 %)
1 diff
(99.6 %id)
AW601662 breast .a 1469 to 1811 13 to 353       341/353
(96 %)
7 diff
(98.1 %id)
BF928888 nervous_tumor .a 1477 to 1776 298 to 2     Submitted on the opposite strand 297/316
(93 %)
14 diff
(95.6 %id)
BG682864 brain, neuroblastoma, cell line .a 1486 to 2106 1 to 628       628/629
(99 %)
13 diff
(98.0 %id)
BF330700 breast .a 1504 to 1985 485 to 3       483/485
(99 %)
0 diff
(100 %id)
AA349582 brain .a 1526 to 1930 1 to 405       405/405
(100 %)
3 diff
(99.3 %id)
AW953122   .a 1526 to 2069 11 to 556       546/570
(95 %)
22 diff
(96.2 %id)
DT219430 brain .a 1530 to 2220 1 to 690       690/690
(100 %)
2 diff
(99.8 %id)
BP264361 small intestine .a 1561 to 2140 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
R14431 whole brain .a 1570 to 1937 1 to 378       378/378
(100 %)
10 diff
(97.4 %id)
H15964 whole brain .a 1570 to 1947 1 to 382       382/430
(88 %)
8 diff
(98.2 %id)
BM686011 eye, Retina Foveal and Macular .a 1575 to 2164 8 to 597     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 590/597
(98 %)
6 diff
(99.0 %id)
AL044699 testis .a 1639 to 2133 1 to 495       495/495
(100 %)
0 diff
(100 %id)
CB270031 adipose .a 1667 to 2076 1 to 410       410/410
(100 %)
3 diff
(99.3 %id)
DB483326 hippocampus .a 1676 to 2135 1 to 460       460/460
(100 %)
0 diff
(100 %id)
CD511960 Pooled-Skin .a 1692 to 2227 1 to 539       539/667
(80 %)
11 diff
(98.4 %id)
AA203280 liver and spleen .a 1733 to 2442 1 to 699       699/730
(95 %)
18 diff
(97.6 %id)
TI_1948142947   .a 1761 to 2656 1009 to 118     Submitted on the opposite strand 892/1205
(74 %)
18 diff
(98.6 %id)
TI_1948142612   .a 1771 to 2672 1000 to 107       894/1272
(70 %)
26 diff
(98.0 %id)
CB159987 Liver .a 1774 to 2326 1 to 556       558/556
(100 %)
7 diff
(98.8 %id)
TI_1948142268   .a 1780 to 2662 1006 to 118       889/1411
(63 %)
13 diff
(99.1 %id)
TI_1948141942   .a 1783 to 2672 1013 to 116       898/1335
(67 %)
23 diff
(98.3 %id)
CF138812 CNCAP(3)T-225 cell line, Prostate .a 1784 to 2243 1 to 460       460/460
(100 %)
5 diff
(99.0 %id)
TI_154168871   .a 1789 to 2295 78 to 584       507/507
(100 %)
1 diff
(99.9 %id)
CD514604 White Matter .a 1805 to 2686 1 to 886       886/887
(99 %)
6 diff
(99.4 %id)
AA319623 adrenal gland .a 1830 to 2170 1 to 344       344/349
(98 %)
4 diff
(98.9 %id)
BX354670 Neuroblastoma Cot 25-normalized .a 1846 to 2959 1115 to 1       1113/1115
(99 %)
25 diff
(97.8 %id)
DB498552 hypothalamus .a 1854 to 2349 1 to 496       496/496
(100 %)
0 diff
(100 %id)
AI372830   .a 1872 to 2260 1 to 391       391/401
(97 %)
4 diff
(99.1 %id)
Z19806   .a 1925 to 2021 97 to 1       97/97
(100 %)
0 diff
(100 %id)
AL036059 brain .a 1926 to 2302 30 to 405       376/405
(92 %)
7 diff
(98.3 %id)
AL565470 brain, fetal brain .a 1933 to 2976 1039 to 1       1039/1111
(93 %)
15 diff
(98.7 %id)
TI_1948142269   .a 1941 to 2662 820 to 102       719/1306
(55 %)
16 diff
(98.8 %id)
TI_1948141941   .a 1944 to 2672 840 to 108       733/1290
(56 %)
9 diff
(99.4 %id)
BG433239 Kidney .a 1945 to 2700 1 to 750       750/750
(100 %)
11 diff
(98.6 %id)
AL568045 brain, fetal brain .a 1946 to 2979 1033 to 1       1033/1135
(91 %)
11 diff
(99.1 %id)
N50774 multiple sclerosis lesions .a 1974 to 2183 1 to 212       212/214
(99 %)
4 diff
(98.2 %id)
CF140911 CNCAP(3)T-225 cell line, Prostate .a 2002 to 2446 8 to 451       444/451
(98 %)
7 diff
(98.5 %id)
BG112500 Bone, osteosarcoma, cell line .a 2002 to 2755 1 to 758       758/959
(79 %)
26 diff
(97.3 %id)
TI_154171522   .a 2002 to 2546 80 to 624       545/1017
(53 %)
4 diff
(99.7 %id)
TI_1948142613   .a 2013 to 2672 774 to 105       670/1423
(47 %)
12 diff
(99.2 %id)
AA309513   .a 2018 to 2265 1 to 248       248/250
(99 %)
5 diff
(98.0 %id)
AA399160.
matches multiple genes
ovarian tumor, ovary .a 2050 to 2479 1 to 430     also hits gene PLAGL2 430/430
(100 %)
1 diff
(99.8 %id)
TI_1948142946   .a 2062 to 2656 719 to 125     Submitted on the opposite strand 595/1470
(40 %)
20 diff
(98.7 %id)
BG250108 adenocarcinoma, cell line, Liver .a 2066 to 2762 1 to 692       691/726
(95 %)
13 diff
(98.3 %id)
W19472.
matches multiple genes
lung .a 2072 to 2525 16 to 481     also hits gene COX6A1P2 465/481
(96 %)
17 diff
(96.5 %id)
BE938723 testis_normal .a 2078 to 2646 12 to 578       567/578
(98 %)
9 diff
(98.5 %id)
BE844163 testis_normal .a 2080 to 2525 446 to 5       442/446
(99 %)
2 diff
(99.6 %id)
BE938729 testis_normal .a 2080 to 2282 197 to 1       197/197
(100 %)
6 diff
(97.0 %id)
BE938753 testis_normal .a 2080 to 2520 456 to 19       438/456
(96 %)
0 diff
(100 %id)
BE938757 testis_normal .a 2080 to 2519 449 to 13       437/449
(97 %)
1 diff
(99.8 %id)
BE938786 testis_normal .a 2080 to 2528 453 to 10       444/453
(98 %)
4 diff
(99.2 %id)
BE938796 testis_normal .a 2080 to 2520 452 to 14       439/452
(97 %)
1 diff
(99.8 %id)
AA027149 uterus .a 2118 to 2344 1 to 227       227/268
(84 %)
7 diff
(97.4 %id)
AA045361 uterus .a 2118 to 2577 1 to 458   fully sequenced,   458/458
(100 %)
2 diff
(99.6 %id)
BM771954 stomach .a 2123 to 2683 1 to 561       561/561
(100 %)
0 diff
(100 %id)
BJ992676 hepatoblastoma .a 2128 to 2536 411 to 3       409/411
(99 %)
1 diff
(99.8 %id)
AI267881 carcinoid, lung .a 2155 to 2609 1 to 456     Submitted on the opposite strand 456/465
(98 %)
1 diff
(99.8 %id)
BE925877 breast_normal .a 2159 to 2610 464 to 13       452/464
(97 %)
0 diff
(100 %id)
CB240933 Human Lung Epithelial cells, lung .a 2160 to 2997 856 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 838/838
(100 %)
2 diff
(99.8 %id)
BM701268 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2162 to 2278 1 to 117       117/117
(100 %)
0 diff
(100 %id)
BM716775 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2162 to 2872 1 to 710       710/710
(100 %)
3 diff
(99.6 %id)
AL044275 testis .a 2163 to 2745 20 to 609       590/613
(96 %)
8 diff
(98.7 %id)
AL526584 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 2168 to 2929 767 to 1       767/767
(100 %)
26 diff
(96.7 %id)
CR603300 B cells (Ramos cell line) Cot 25-normalized .a 2171 to 3002 1 to 832   tiling clone,   832/832
(100 %)
0 diff
(100 %id)
BX454938 brain, fetal brain .a 2171 to 2970 809 to 4       806/809
(99 %)
18 diff
(97.8 %id)
BX384829   .a 2171 to 2991 1 to 821   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 821/821
(100 %)
2 diff
(99.8 %id)
AA129600 uterus .a 2181 to 2629 1 to 452   fully sequenced,   452/452
(100 %)
3 diff
(99.4 %id)
BE844180 testis_normal .a 2189 to 2766 577 to 1       577/577
(100 %)
5 diff
(99.2 %id)
BE844182 testis_normal .a 2189 to 2744 562 to 4       559/562
(99 %)
4 diff
(99.3 %id)
FN156230 breast carcinoma .a 2211 to 2311 101 to 1     Submitted on the opposite strand 101/101
(100 %)
0 diff
(100 %id)
N98967 lung .a 2212 to 2577 1 to 370   fully sequenced,   370/370
(100 %)
9 diff
(97.6 %id)
CA432214 cell lines, Enchondroma .a 2213 to 3000 798 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 782/782
(100 %)
10 diff
(98.8 %id)
AU309844 neuroblastoma .a 2214 to 2753 542 to 3       540/542
(99 %)
0 diff
(100 %id)
H56635 pineal gland .a 2217 to 2543 1 to 326       326/411
(79 %)
5 diff
(98.8 %id)
N98868 lung .a 2220 to 2355 1 to 136       136/136
(100 %)
2 diff
(98.6 %id)
BX363587   .a 2226 to 2916 702 to 12   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 691/702
(98 %)
10 diff
(98.6 %id)
BI917855 brain .a 2237 to 3006 1 to 772       772/783
(98 %)
8 diff
(99.0 %id)
TI_57243978   .a 2237 to 3006 35 to 806       772/817
(94 %)
16 diff
(98.1 %id)
BX279576 brain .a 2239 to 2758 1 to 520       520/520
(100 %)
0 diff
(100 %id)
AI056999 liver and spleen .a 2249 to 2991 751 to 12   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 740/750
(98 %)
10 diff
(98.7 %id)
BU623050 cell lines, Chondrosarcoma .a 2251 to 2997 765 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 747/749
(99 %)
7 diff
(99.1 %id)
TI_159714989   .a 2256 to 3000 835 to 92   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 744/978
(76 %)
2 diff
(99.8 %id)
TI_159715268   .a 2256 to 3000 838 to 95   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 744/1034
(71 %)
2 diff
(99.9 %id)
CB306769 Human Lung Epithelial cells, lung .a 2256 to 3000 759 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 744/750
(99 %)
2 diff
(99.8 %id)
AI056262 liver and spleen .a 2269 to 2997 741 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 729/729
(100 %)
5 diff
(99.4 %id)
FN146312 breast carcinoma .a 2277 to 2362 96 to 11     Submitted on the opposite strand 86/96
(89 %)
0 diff
(100 %id)
AI950962 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .a 2284 to 2997 714 to 1       714/714
(100 %)
4 diff
(99.5 %id)
CB321884 Human Lung Epithelial cells, lung .a 2285 to 3000 730 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 715/715
(100 %)
2 diff
(99.8 %id)
BG683578 brain, neuroblastoma, cell line .a 2310 to 2912 603 to 1       603/603
(100 %)
1 diff
(99.9 %id)
AA043631 uterus .a 2314 to 2618 1 to 307       307/322
(95 %)
7 diff
(97.9 %id)
FN047143 breast carcinoma .a 2324 to 2376 53 to 1     Submitted on the opposite strand 53/54
(98 %)
0 diff
(100 %id)
BQ021185 lung, Metastatic Chondrosarcoma .a 2326 to 2991 684 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 666/666
(100 %)
1 diff
(99.9 %id)
BQ016134 lung, Metastatic Chondrosarcoma .a 2329 to 3005 696 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 678/678
(100 %)
2 diff
(99.8 %id)
AA938287 2 pooled tumors (clear cell type), Kidney .a 2335 to 2798 465 to 2       464/465
(99 %)
2 diff
(99.6 %id)
AI073476   .a 2338 to 2999 664 to 3       662/664
(99 %)
0 diff
(100 %id)
ES315688 melanoma cell line .a 2364 to 2828 567 to 103     Submitted on the opposite strand 465/643
(72 %)
0 diff
(100 %id)
AW801508 uterus .a 2371 to 2708 343 to 5       339/343
(98 %)
0 diff
(100 %id)
AW801640 uterus .a 2379 to 2708 336 to 5       332/336
(98 %)
1 diff
(99.8 %id)
TI_57175220   .a 2399 to 2960 20 to 581       562/581
(96 %)
7 diff
(98.8 %id)
AI623816 adenocarcinoma, Pancreas .a 2401 to 3002 604 to 5       600/604
(99 %)
2 diff
(99.7 %id)
BE879744 large cell carcinoma, undifferentiated, lung .a 2401 to 3018 1 to 619       619/619
(100 %)
3 diff
(99.6 %id)
AI129911 uterus .a 2408 to 2991 591 to 1       591/591
(100 %)
17 diff
(97.2 %id)
BI828529 brain, medulla .a 2408 to 2960 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
BM993597 lung, Metastatic Chondrosarcoma .a 2439 to 2997 571 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 559/559
(100 %)
1 diff
(99.9 %id)
BM674402 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2439 to 2997 577 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 559/559
(100 %)
2 diff
(99.7 %id)
N50691 multiple sclerosis lesions .a 2442 to 2804 370 to 4       367/507
(72 %)
5 diff
(99.1 %id)
AI564574 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2445 to 2997 582 to 32   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 551/562
(98 %)
43 diff
(92.4 %id)
AA292258.
matches multiple genes
ovarian tumor, ovary .a 2459 to 2993 535 to 1     also hits gene PLAGL2 535/535
(100 %)
1 diff
(99.9 %id)
AA702332 liver and spleen .a 2461 to 2991 531 to 1       531/531
(100 %)
3 diff
(99.5 %id)
DB354750 whole embryo, mainly head .a 2465 to 2991 527 to 1       527/530
(99 %)
2 diff
(99.7 %id)
DB366924   .a 2465 to 2997 536 to 1       536/539
(99 %)
9 diff
(98.4 %id)
AI741295 pooled .a 2467 to 2997 549 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 531/531
(100 %)
2 diff
(99.7 %id)
AW996784 breast_normal .a 2483 to 2607 124 to 1     Submitted on the opposite strand 124/124
(100 %)
1 diff
(99.2 %id)
AI290683 carcinoid, lung .a 2500 to 2994 495 to 1       495/495
(100 %)
2 diff
(99.6 %id)
AA043725.
matches multiple genes
uterus .a 2502 to 2991 497 to 1     also hits gene FEM1B 497/502
(99 %)
8 diff
(98.5 %id)
BM663656 eye, Retina Foveal and Macular .a 2502 to 2997 513 to 18   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 496/496
(100 %)
1 diff
(99.8 %id)
DB568177 hypothalamus .a 2516 to 2997 1 to 482     Submitted on the opposite strand 482/482
(100 %)
1 diff
(99.8 %id)
AA045141 uterus .a 2516 to 2991 479 to 1   fully sequenced,   479/479
(100 %)
1 diff
(99.8 %id)
AA828543 germinal center B cell .a 2516 to 3005 510 to 21   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 490/491
(99 %)
3 diff
(99.4 %id)
AA701292 liver and spleen .a 2518 to 2991 474 to 1       474/474
(100 %)
2 diff
(99.6 %id)
DB369309   .a 2535 to 2997 462 to 1       462/530
(87 %)
8 diff
(98.5 %id)
N69828 lung .a 2547 to 2997 458 to 1   fully sequenced,   458/458
(100 %)
7 diff
(98.5 %id)
DB321423 mammary gland .a 2547 to 2997 448 to 1       448/451
(99 %)
9 diff
(98.1 %id)
N69839 lung .a 2549 to 2997 455 to 1       455/463
(98 %)
6 diff
(98.8 %id)
AA129601 uterus .a 2599 to 2991 399 to 1   fully sequenced,   399/399
(100 %)
6 diff
(98.5 %id)
R40757 whole brain .a 2720 to 3002 289 to 5       285/289
(98 %)
0 diff
(100 %id)
H15045 whole brain .a 2777 to 2999 223 to 1       223/223
(100 %)
1 diff
(99.6 %id)
BU949411 Pancreas, Purified pancreatic islet .b 1 to 415 1 to 415   tiling clone,   415/415
(100 %)
3 diff
(99.3 %id)
BM715288 eye, human retina .b 2119 to 2802 1 to 684   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 684/684
(100 %)
1 diff
(99.9 %id)
AI372831   .b 2178 to 2567 395 to 1       395/410
(96 %)
11 diff
(97.4 %id)
BU949165 Pancreas, Purified pancreatic islet .b 2200 to 2803 604 to 1   tiling clone,   604/604
(100 %)
8 diff
(98.7 %id)
AJ709923 heart .b 2268 to 2800 533 to 2     Submitted on the opposite strand 532/533
(99 %)
0 diff
(100 %id)
DB569618 hypothalamus .b 2271 to 2794 1 to 524     Submitted on the opposite strand 524/526
(99 %)
2 diff
(99.7 %id)
DB545515 hippocampus .b 2318 to 2802 1 to 485     Submitted on the opposite strand 485/485
(100 %)
6 diff
(98.8 %id)
DB575245 hypothalamus .b 2332 to 2802 1 to 471     Submitted on the opposite strand 471/472
(99 %)
3 diff
(99.4 %id)
DB544211 hippocampus .b 2337 to 2800 1 to 464     Submitted on the opposite strand 464/466
(99 %)
2 diff
(99.6 %id)
BU729503 eye, human retina .b 2721 to 2802 100 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 82/82
(100 %)
0 diff
(100 %id)
BP425170 small intestine .c 1 to 534 1 to 534   tiling clone, Submitted on the opposite strand 534/534
(100 %)
0 diff
(100 %id)
AK122897 synovial membrane tissue from rheumatioidarthritis .c 26 to 4125 1 to 4100 exact tiling clone, available from FLJ,   4100/4100
(100 %)
3 diff
(100.0 %id)
DA991682 synovial membrane tissue from rheumatioidarthritis .c 27 to 522 2 to 497   capped   496/496
(100 %)
1 diff
(99.8 %id)
DB334996 synovial membrane tissue from rheumatioidarthritis .c 3580 to 4125 546 to 1       546/546
(100 %)
1 diff
(99.9 %id)
AI090702 heart .c 3669 to 4126 457 to 1       457/544
(84 %)
32 diff
(94.2 %id)
BG198086   .c 3675 to 4125 1 to 450   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 450/450
(100 %)
11 diff
(97.6 %id)
BG219673   .c 3675 to 4127 1 to 450   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 450/450
(100 %)
7 diff
(98.5 %id)
DB524156 testis .c 3675 to 4125 8 to 469     Submitted on the opposite strand 462/469
(98 %)
4 diff
(99.2 %id)
DB549027 hippocampus .c 3675 to 4130 1 to 458     Submitted on the opposite strand 458/458
(100 %)
7 diff
(98.5 %id)
DB565686 hypothalamus .c 3675 to 4125 2 to 463     Submitted on the opposite strand 462/463
(99 %)
4 diff
(99.2 %id)
DB523961 testis .c 3679 to 4131 7 to 459     Submitted on the opposite strand 453/459
(98 %)
1 diff
(99.8 %id)
DB552057 hippocampus .c 3679 to 4131 7 to 459     Submitted on the opposite strand 453/459
(98 %)
1 diff
(99.8 %id)
DB552237 hippocampus .c 3679 to 4130 9 to 461     Submitted on the opposite strand 453/461
(98 %)
6 diff
(98.7 %id)
AI150647 heart .c 3679 to 4133 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
AI139432 uterus .c 3679 to 4131 463 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 453/453
(100 %)
4 diff
(99.2 %id)
TI_149284090   .c 3680 to 4134 518 to 64   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 455/820
(55 %)
5 diff
(99.4 %id)
BM984440 lung, Primary Lung Epithelial Cells .c 3680 to 4134 470 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 455/467
(97 %)
5 diff
(99.0 %id)
DB515846 testis .c 3681 to 4131 1 to 448     Submitted on the opposite strand 448/448
(100 %)
8 diff
(98.3 %id)
N52952 multiple sclerosis lesions .c 3681 to 4127 450 to 1       450/458
(98 %)
4 diff
(99.2 %id)
DB509906 testis .c 3683 to 4131 1 to 449     Submitted on the opposite strand 449/449
(100 %)
3 diff
(99.4 %id)
DB535580 hippocampus .c 3684 to 4123 1 to 441     Submitted on the opposite strand 441/443
(99 %)
5 diff
(98.9 %id)
BG210208   .c 3687 to 4125 12 to 449   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 438/449
(97 %)
6 diff
(98.7 %id)
TI_57173096   .c 3690 to 4141 25 to 476       452/831
(54 %)
6 diff
(99.3 %id)
AI085654 anaplastic oligodendroglioma, brain .c 3691 to 4131 441 to 1   tiling clone,   441/441
(100 %)
0 diff
(100 %id)
AI401257 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3694 to 4129 435 to 1       435/435
(100 %)
7 diff
(98.4 %id)
BI826809 brain, medulla .c 3694 to 4141 1 to 448       448/803
(55 %)
8 diff
(99.1 %id)
DB565214 hypothalamus .c 3697 to 4131 1 to 435     Submitted on the opposite strand 435/436
(99 %)
3 diff
(99.4 %id)
AA437130   .c 3697 to 4132 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
AA806944 germinal center B cell .c 3715 to 4131 416 to 1       416/416
(100 %)
4 diff
(99.1 %id)
N90302 lung .c 3717 to 4131 416 to 1       416/416
(100 %)
2 diff
(99.6 %id)
DB507404 testis .c 3729 to 4131 1 to 403     Submitted on the opposite strand 403/403
(100 %)
6 diff
(98.6 %id)
AW008508 thymus, pooled .c 3745 to 4131 387 to 1       387/387
(100 %)
4 diff
(99.0 %id)
AA732829 heart .c 3751 to 4131 381 to 1       381/381
(100 %)
1 diff
(99.8 %id)
AI018763   .c 3757 to 4133 378 to 2       377/378
(99 %)
0 diff
(100 %id)
AA947656 pooled germ cell tumors .c 3759 to 4131 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AA488298   .c 3762 to 4131 370 to 1       370/370
(100 %)
1 diff
(99.8 %id)
AI349101 2 pooled tumors (clear cell type), Kidney .c 3789 to 4133 346 to 2       345/346
(99 %)
0 diff
(100 %id)
FN152896 breast carcinoma .c 3797 to 3902 105 to 1     Submitted on the opposite strand 105/105
(100 %)
3 diff
(97.2 %id)
AA569629 Prostate, prostatic intraepithelial neoplasia - highgrade .c 3800 to 4129 332 to 3       330/334
(98 %)
0 diff
(100 %id)
AW014977   .c 3807 to 4131 342 to 18   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 325/335
(97 %)
1 diff
(99.8 %id)
AI187219   .c 3814 to 4133 321 to 2       320/321
(99 %)
0 diff
(100 %id)
T33006 brain .c 3814 to 4131 318 to 1       318/318
(100 %)
0 diff
(100 %id)
DB539882 hippocampus .c 3815 to 4129 1 to 319     Submitted on the opposite strand 319/321
(99 %)
15 diff
(95.4 %id)
AI369401 anaplastic oligodendroglioma, brain .c 3840 to 4131 304 to 13   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 292/292
(100 %)
2 diff
(99.4 %id)
AI918979 Prostate .c 3840 to 4131 315 to 24   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 292/292
(100 %)
2 diff
(99.4 %id)
AI928215 Kidney .c 3859 to 4131 302 to 29   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 274/274
(100 %)
10 diff
(96.4 %id)
AI140211 lung .c 3865 to 4298 434 to 1   tiling clone,   434/434
(100 %)
2 diff
(99.6 %id)
AW316962 brain, three pooled meningiomas .c 3869 to 4131 263 to 1       263/263
(100 %)
1 diff
(99.7 %id)
DB539365 hippocampus .c 3876 to 4130 1 to 255     Submitted on the opposite strand 255/255
(100 %)
11 diff
(95.7 %id)
BM715968 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3899 to 4125 9 to 235   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 227/235
(96 %)
6 diff
(97.5 %id)
AI268533 carcinoid, lung .c 3912 to 4092 1 to 181     Submitted on the opposite strand 181/181
(100 %)
1 diff
(99.5 %id)
AA939159 carcinoid, lung .c 3918 to 4055 1 to 138     Submitted on the opposite strand 138/138
(100 %)
1 diff
(99.3 %id)
Z38322 brain, total brain .c 3920 to 4125 206 to 1       206/206
(100 %)
0 diff
(100 %id)
T15865   .c 3932 to 4125 194 to 1       194/202
(96 %)
0 diff
(100 %id)
BM674276 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3938 to 4125 206 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 188/188
(100 %)
0 diff
(100 %id)
N63216 cochlea, ear .c 4012 to 4306 299 to 2   tiling clone,   298/299
(99 %)
0 diff
(100 %id)
DR978282 brain .c 4021 to 4133 1 to 112     Submitted on the opposite strand 112/114
(98 %)
8 diff
(93.0 %id)
AK297368 brain .d 1 to 2789 2 to 2790 exact tiling clone,   2790/2790
(100 %)
3 diff
(99.9 %id)
DC351362 brain .d 1 to 559 2 to 560       560/560
(100 %)
1 diff
(99.9 %id)
BF967471 brain, hypothalamus .d 77 to 570 200 to 693       494/693
(71 %)
14 diff
(98.0 %id)
BC048012.
matches multiple genes
brain, Brain, hypothalamus, hypothalamus .d 77 to 2783 195 to 2901 L316R tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base), also hits gene ARL13B 2707/2901
(93 %)
8 diff
(99.8 %id)
BI602888 brain, hypothalamus .d 77 to 512 200 to 636       437/636
(68 %)
13 diff
(98.0 %id)
TI_45215094   .d 77 to 512 320 to 756       437/756
(57 %)
13 diff
(98.3 %id)
BF967544 brain, hypothalamus .d 1967 to 2738 790 to 6       785/918
(85 %)
25 diff
(97.3 %id)
AK303052 testis .e 1 to 3013 1 to 3013 I656V tiling clone,   3013/3015
(99 %)
2 diff
(100.0 %id)
DB100039 testis .e 2 to 585 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DB133719 thymus .e 75 to 618 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DC397435 testis .f 1 to 567 1 to 567   tiling clone,   567/568
(99 %)
1 diff
(99.9 %id)
AK301912 testis .f 26 to 1981 1 to 1956 exact tiling clone,   1956/1956
(100 %)
2 diff
(99.9 %id)
DC396052 testis .f 26 to 627 1 to 602       602/602
(100 %)
0 diff
(100 %id)
BG718190 testis .g 1 to 704 6 to 709 M60V T189S A190C tiling clone,   704/709
(99 %)
9 diff
(98.8 %id)
DA647576   .h 1 to 815 2 to 815   tiling clone, capped   814/814
(100 %)
4 diff
(99.6 %id)
DC367195   .i 1 to 556 1 to 556 exact tiling clone,   556/556
(100 %)
2 diff
(99.7 %id)
BP230675 brain .j 1 to 583 1 to 583 K10R V11S C12V D13I N14I ... tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
DA118333 cerebellum .k-u 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
DA662105   .k-u 403 to 960 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
AI805960 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k-u 686 to 1169 484 to 1   tiling clone,   484/484
(100 %)
3 diff
(99.4 %id)
AI275132 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k-u 832 to 1105 336 to 63       274/336
(81 %)
9 diff
(97.4 %id)
H16932 whole brain .l-u 1 to 475 1 to 487   tiling clone, to resequence, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 487/489
(99 %)
29 diff
(94.1 %id)
DA235856 brain .l-u 1357 to 1927 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
AK125934 testis .l-u 1899 to 5612 1 to 3716 exact tiling clone, available from FLJ,   3716/3716
(100 %)
12 diff
(99.7 %id)
DB071786 testis .l-u 1900 to 2448 2 to 552 exact capped   551/551
(100 %)
1 diff
(99.9 %id)
AW029282 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .l-u 2461 to 2945 485 to 1       485/485
(100 %)
2 diff
(99.6 %id)
BE350954 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .l-u 2477 to 2945 469 to 1       469/469
(100 %)
2 diff
(99.6 %id)
BX110014 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .l-u 2491 to 2943 467 to 15   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 453/453
(100 %)
2 diff
(99.6 %id)
AI923460 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .l-u 2512 to 2962 458 to 9   tiling clone,   450/458
(98 %)
0 diff
(100 %id)
DB110806 thymus .l-u 2930 to 3513 2 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
DA181911 amygdala .l-u 3521 to 4079 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BG678072 skin, squamous cell carcinoma .l-u 3580 to 4131 1 to 552       552/552
(100 %)
6 diff
(99.0 %id)
BI918598 brain .l-u 3784 to 4556 1 to 771       771/771
(100 %)
11 diff
(98.6 %id)
TI_57238511   .l-u 3784 to 4556 1 to 771       771/771
(100 %)
11 diff
(98.6 %id)
AF119303 melanoma .l-u 4286 to 4537 255 to 4       252/255
(98 %)
0 diff
(100 %id)
BG698173 skin .l-u 4621 to 5312 1 to 688       688/691
(99 %)
9 diff
(98.7 %id)
DB340254 testis .l-u 5056 to 5612 557 to 1       557/557
(100 %)
2 diff
(99.7 %id)
DB305695 brain .l-u 5079 to 5618 540 to 1       540/540
(100 %)
5 diff
(99.1 %id)
DB343307 thymus .l-u 5088 to 5618 532 to 1   tiling clone,   532/532
(100 %)
2 diff
(99.7 %id)
H16824 whole brain .l-u 5205 to 5618 432 to 11   tiling clone, to resequence, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 422/424
(99 %)
12 diff
(97.2 %id)
CK822528 Pancreas, Purified pancreatic islet .m-u 1 to 491 1 to 491 exact tiling clone, Submitted on the opposite strand 491/491
(100 %)
0 diff
(100 %id)
BM509552 Pancreas, Purified pancreatic islet .m-u 34 to 420 1 to 387       387/387
(100 %)
0 diff
(100 %id)
BM505165 Pancreas, Purified pancreatic islet .m-u 221 to 814 595 to 2   tiling clone,   594/595
(99 %)
0 diff
(100 %id)
CK822529 Pancreas, Purified pancreatic islet .m-u 339 to 826 489 to 1   tiling clone, Submitted on the opposite strand 489/489
(100 %)
7 diff
(98.6 %id)
BI917477 brain .n-u 1 to 612 1 to 620 S16R I17Y L18* tiling clone,   620/624
(99 %)
16 diff
(97.5 %id)
TI_57244847   .n-u 1 to 612 60 to 679 S16R I17Y L18*     620/683
(90 %)
16 diff
(97.7 %id)
BP278982   .o 1 to 592 1 to 592 exact tiling clone,   592/592
(100 %)
1 diff
(99.9 %id)
DA246839 brain .p-u 1 to 537 2 to 538 exact tiling clone, capped   537/537
(100 %)
2 diff
(99.7 %id)
BM149385 leukopheresis .q 1 to 448 9 to 456 exact tiling clone,   448/448
(100 %)
3 diff
(99.4 %id)
AU145445 whole embryo, mainly head Gene KIFAP3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AU119008 whole embryo, mainly head Gene KIFAP3, variant not shown       capped Suspected internal deletion, suspected internal deletion, this clone was ignored    
CA335647 anterior rhombomeres 1-4 (4 pooled) Gene KIFAP3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m-u, .n-u, .o, .p-u, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI