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Gene XKR4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
24 supporting clones for gene XKR4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC106028 Peripheral Nervous System, sympathetictrunk .a 1 to 842 1 to 842   tiling clone,   842/1578
(53 %)
1 diff
(100.0 %id)
AY534241   .a 4 to 3910 1 to 3907 exact tiling clone, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 3907/3907
(100 %)
0 diff
(100 %id)
BQ881619 sympathetic trunk .a 4 to 730 1 to 736       736/890
(82 %)
29 diff
(96.8 %id)
NM_052898.1   .a 4 to 3910 1 to 3907 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 3907/3907
(100 %)
0 diff
(100 %id)
AB067476 brain .a 470 to 3910 1 to 3441   available from KIAA,   3441/3441
(100 %)
0 diff
(100 %id)
DA708570   .a 517 to 1043 2 to 528   capped   527/534
(98 %)
2 diff
(99.7 %id)
AU252430 neuroblastoma .a 1520 to 2194 23 to 700       678/700
(96 %)
5 diff
(99.3 %id)
BX952967   .a 1863 to 2340 1 to 478       478/478
(100 %)
0 diff
(100 %id)
BI820247 pooled brain, lung, testis .a 1938 to 2763 1 to 824       824/840
(98 %)
16 diff
(98.1 %id)
TI_57199661   .a 1939 to 2763 56 to 878       823/894
(92 %)
16 diff
(98.3 %id)
AI879399.
matches multiple genes
brain, frontal lobe .a 2051 to 2480 430 to 1     also hits gene MRPS31 430/430
(100 %)
3 diff
(99.4 %id)
D60471 brain .a 2166 to 2600 1 to 436       436/436
(100 %)
4 diff
(99.1 %id)
D60966   .a 2166 to 2447 1 to 283       283/284
(99 %)
6 diff
(97.9 %id)
D61083   .a 2166 to 2523 1 to 358       358/358
(100 %)
5 diff
(98.7 %id)
D61255   .a 2166 to 2533 1 to 367       367/367
(100 %)
7 diff
(98.1 %id)
BM449480 eye, retinoblastoma .a 2497 to 3190 1 to 697       697/1032
(67 %)
33 diff
(96.9 %id)
T79882 whole brain .a 2868 to 3241 1 to 373       373/555
(67 %)
8 diff
(98.6 %id)
CA390886 eye, RPE/choroid .a 2878 to 3563 1 to 686       686/686
(100 %)
0 diff
(100 %id)
R17904 whole brain .a 2903 to 3239 35 to 378     Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 344/379
(90 %)
18 diff
(95.3 %id)
R54211 whole brain .a 2903 to 3279 33 to 416       384/417
(92 %)
8 diff
(98.1 %id)
R15224 whole brain .a 2907 to 3272 1 to 372       372/378
(98 %)
14 diff
(96.3 %id)
AU252431 neuroblastoma .a 3232 to 3927 699 to 2       698/700
(99 %)
0 diff
(100 %id)
DB324035   .a 3345 to 3910 566 to 1       566/566
(100 %)
0 diff
(100 %id)
R54212 whole brain .a 3393 to 3915 528 to 1       528/528
(100 %)
19 diff
(96.5 %id)
BX105819 whole brain .a 3417 to 3910 512 to 15   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 498/499
(99 %)
4 diff
(99.2 %id)
R37600 whole brain .a 3477 to 3919 448 to 1       448/450
(99 %)
6 diff
(98.7 %id)
D80844 brain .a 3503 to 3910 411 to 1       411/411
(100 %)
4 diff
(99.1 %id)
R41661 whole brain .a 3530 to 3916 407 to 3       405/470
(86 %)
0 diff
(100 %id)
R43150 whole brain .a 3579 to 3910 356 to 11   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 346/348
(99 %)
19 diff
(94.6 %id)
R36899 whole brain .a 3585 to 3919 342 to 1       342/413
(82 %)
8 diff
(98.1 %id)
TI_151772551   .b 1 to 492 95 to 589 P3Q A6V V16L tiling clone,   495/1227
(40 %)
17 diff
(98.7 %id)
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C