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Gene SRRM4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene SRRM4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA172878 amygdala .a 1 to 504 7 to 511   capped   510/554
(92 %)
8 diff
(98.6 %id)
DA685418   .a 1 to 503 2 to 504   tiling clone, capped   503/567
(88 %)
3 diff
(99.5 %id)
AL713033 human skeletal muscle .a 30 to 225 1 to 196       196/196
(100 %)
1 diff
(99.5 %id)
DA795545 brain .a 32 to 295 2 to 265   tiling clone, capped   264/264
(100 %)
0 diff
(100 %id)
DA784028 brain .a 34 to 504 2 to 472   capped   471/556
(84 %)
3 diff
(99.5 %id)
AB058756 brain .a 81 to 5292 1 to 5206 R553W tiling clone, available from KIAA,   5206/5206
(100 %)
3 diff
(100.0 %id)
BC152471 Clones donated by Kazusa DNA Research Inst. .a 81 to 5292 12 to 5217 R553W AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 5206/5206
(100 %)
3 diff
(100.0 %id)
BC167162 Clones donated by Kazusa DNA Research Inst. .a 81 to 5292 1 to 5206 R553W AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 5206/5206
(100 %)
3 diff
(100.0 %id)
BC167163 Clones donated by Kazusa DNA Research Inst. .a 81 to 5292 1 to 5206 R553W AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 5206/5206
(100 %)
3 diff
(100.0 %id)
NM_194286.2   .a 81 to 8462 1 to 8382   RefSeq,   8382/8382
(100 %)
0 diff
(100 %id)
DA506793 brain .a 83 to 503 2 to 422   capped   421/510
(82 %)
4 diff
(99.3 %id)
DB168971 kidney, tumor tissue .a 157 to 739 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DR002302 fetal brain .a 201 to 887 1 to 688       688/695
(98 %)
7 diff
(99.0 %id)
DR002170 fetal brain .a 242 to 878 1 to 635       635/635
(100 %)
6 diff
(99.1 %id)
AK291361 brain .a 504 to 2422 520 to 2438       2438/2438
(100 %)
2 diff
(100.0 %id)
D61517   .a 891 to 1219 11 to 335       325/335
(97 %)
10 diff
(97.1 %id)
TI_1166720014   .a 966 to 1339 390 to 17       374/394
(94 %)
5 diff
(98.8 %id)
TI_1166720013   .a 984 to 1310 369 to 43       327/355
(92 %)
2 diff
(99.5 %id)
BM686798 eye, optic nerve .a 1224 to 1851 1 to 629     Possibly primed on the genome, locally A rich (20/24 A in genome downstream of last aligned base) 629/629
(100 %)
6 diff
(99.1 %id)
DB322902   .a 1885 to 2460 576 to 1       576/576
(100 %)
3 diff
(99.5 %id)
AY130006 medulloblastoma .a 1935 to 2460 1 to 526   tiling clone,   526/526
(100 %)
1 diff
(99.9 %id)
BM672974 eye, optic nerve .a 2062 to 2460 417 to 19   AAA Possibly primed on the genome, locally A rich (20/24 A in genome downstream of last aligned base) 399/399
(100 %)
0 diff
(100 %id)
AA782978   .a 2116 to 2464 348 to 1       348/348
(100 %)
5 diff
(98.6 %id)
AL707158 human skeletal muscle .a 2455 to 2810 1 to 356       356/356
(100 %)
0 diff
(100 %id)
DA162233 amygdala .a 3299 to 3765 2 to 468   capped   467/476
(98 %)
3 diff
(99.4 %id)
AA322595 brain, cerebellum .a 3789 to 3951 1 to 163       163/170
(95 %)
4 diff
(97.7 %id)
BQ027845 mixed .a 3981 to 4398 556 to 139   AAA   418/538
(77 %)
0 diff
(100 %id)
BE218946 carcinoid, lung .a 4002 to 4340 339 to 1       339/339
(100 %)
0 diff
(100 %id)
CK004576 brain/CNS, Human Brain - Frontal Cortex .a 4348 to 4882 1 to 530       530/533
(99 %)
8 diff
(98.5 %id)
DA223714 brain .a 4360 to 4870 2 to 512   tiling clone, capped   511/511
(100 %)
0 diff
(100 %id)
BM465531 eye, retinoblastoma .a 4415 to 4760 25 to 370       346/1279
(27 %)
5 diff
(99.7 %id)
DA339950 hippocampus .a 4444 to 5043 2 to 602   capped   601/601
(100 %)
1 diff
(99.9 %id)
DA315189 hippocampus .a 4653 to 5221 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA810566 brain .a 4690 to 5227 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA211508 brain .a 4704 to 5254 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA534387 brain .a 4835 to 5128 2 to 295   capped   294/294
(100 %)
0 diff
(100 %id)
DA128362 cerebellum .a 4836 to 5411 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
BX281343 pooled germ cell tumors .a 4952 to 5292 1 to 341   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 341/341
(100 %)
0 diff
(100 %id)
BF062141 pooled germ cell tumors .a 4961 to 5292 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AW003275 pooled germ cell tumors .a 4985 to 5292 309 to 1       309/309
(100 %)
3 diff
(99.1 %id)
AW293483   .a 5009 to 5292 301 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 284/284
(100 %)
1 diff
(99.7 %id)
AW594066 pooled germ cell tumors .a 5053 to 5292 242 to 1       242/249
(97 %)
3 diff
(98.8 %id)
AW594642 pooled germ cell tumors .a 5100 to 5292 193 to 1       193/193
(100 %)
0 diff
(100 %id)
DA402661 thalamus .a 5198 to 5687 2 to 490   capped   489/489
(100 %)
1 diff
(99.8 %id)
AK125400 brain .a 5239 to 8462 1 to 3217   tiling clone, available from FLJ,   3217/3217
(100 %)
4 diff
(99.9 %id)
DA784822 brain .a 5240 to 5699 2 to 460   capped   459/459
(100 %)
2 diff
(99.6 %id)
CR736818   .a 5600 to 6115 1 to 519   tiling clone,   519/519
(100 %)
3 diff
(99.5 %id)
H10301 whole brain .a 5602 to 6123 1 to 539     Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 539/540
(99 %)
20 diff
(96.3 %id)
BM662085 eye, human retina .a 5754 to 6134 1 to 381     Submitted on the opposite strand 381/381
(100 %)
7 diff
(98.2 %id)
R10061 whole brain .a 5771 to 6141 1 to 382       382/464
(82 %)
16 diff
(96.6 %id)
DA147488 amygdala .a 5808 to 6381 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BQ011619 placenta .a 5909 to 6173 18 to 282     Submitted on the opposite strand 265/282
(93 %)
0 diff
(100 %id)
DA775324 brain .a 5918 to 6494 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA161151 amygdala .a 5945 to 6515 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BM927278 brain .a 5948 to 6994 1 to 1048       1048/1048
(100 %)
39 diff
(96.3 %id)
DA502111 brain .a 6083 to 6652 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA489295 brain .a 6196 to 6751 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA006179   .a 6237 to 6797 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AA324021 brain, cerebellum .a 6285 to 6600 1 to 316       316/320
(98 %)
1 diff
(99.7 %id)
AA324027 brain, cerebellum .a 6285 to 6562 1 to 278       278/278
(100 %)
0 diff
(100 %id)
AW962002   .a 6286 to 6948 1 to 662       662/662
(100 %)
9 diff
(98.7 %id)
DA064004 cerebellum .a 6308 to 6873 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA180656 amygdala .a 6394 to 6962 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
BQ719476 sympathetic trunk .a 6422 to 7335 1 to 916       916/916
(100 %)
11 diff
(98.8 %id)
DA155264 amygdala .a 6437 to 7014 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA066824 cerebellum .a 6442 to 6918 2 to 478   capped   477/477
(100 %)
1 diff
(99.8 %id)
AK055717   .a 6550 to 8460 1 to 1912   tiling clone, available from FLJ,   1912/1912
(100 %)
4 diff
(99.8 %id)
DA604932   .a 6551 to 7064 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
H10302 whole brain .a 6880 to 7295 433 to 12   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 422/422
(100 %)
10 diff
(97.7 %id)
R12793 whole brain .a 7136 to 7305 170 to 1       170/170
(100 %)
0 diff
(100 %id)
DB326390 brain .a 7895 to 8462 568 to 1       568/568
(100 %)
6 diff
(99.0 %id)
DB325955 brain .a 7897 to 8460 566 to 1       566/566
(100 %)
2 diff
(99.7 %id)
DB320053   .a 7923 to 8460 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
DA903775   .b 1 to 460 2 to 461 S135X tiling clone, capped   460/460
(100 %)
0 diff
(100 %id)
DB054742 testis .c 1 to 560 2 to 561 exact tiling clone, to resequence, capped   560/560
(100 %)
0 diff
(100 %id)
DB338833 testis .c 1275 to 1800 527 to 2   tiling clone, to resequence,   526/527
(99 %)
0 diff
(100 %id)
DA060985 cerebellum .d-u 1 to 548 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
D81235 brain .d-u 122 to 412 1 to 291       291/291
(100 %)
2 diff
(99.4 %id)
BF206839 brain, neuroblastoma .d-u 135 to 762 1 to 625   AAA   625/1031
(60 %)
11 diff
(99.0 %id)
BF311881 brain, neuroblastoma .d-u 135 to 739 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
BF315452 brain, neuroblastoma .d-u 135 to 846 1 to 699       699/724
(96 %)
24 diff
(96.7 %id)
BF317273 brain, neuroblastoma .d-u 135 to 742 1 to 607       607/895
(67 %)
24 diff
(97.4 %id)
BM723637 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d-u 179 to 732 1 to 554   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 554/554
(100 %)
0 diff
(100 %id)
BQ719164 sympathetic trunk .d-u 208 to 1069 1 to 873       873/887
(98 %)
21 diff
(97.7 %id)
BX488955   .d-u 295 to 858 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BG149975 carcinoid, lung .d-u 315 to 736 425 to 1       425/434
(97 %)
3 diff
(99.4 %id)
AI887860 carcinoid, lung .d-u 353 to 696 1 to 344     Submitted on the opposite strand 344/344
(100 %)
0 diff
(100 %id)
CA976031 sciatic nerve .d-u 453 to 1350 1 to 908   tiling clone,   908/917
(99 %)
25 diff
(97.3 %id)
BM690239 eye, human retina .d-u 459 to 732 301 to 28   AAA Submitted on the opposite strand 274/276
(99 %)
2 diff
(99.3 %id)
TI_57197910   .d-u 771 to 1478 25 to 736   tiling clone,   712/736
(96 %)
0 diff
(100 %id)
BI821235 pooled brain, lung, testis .d-u 781 to 1478 1 to 702       702/702
(100 %)
8 diff
(98.9 %id)
BX095428 carcinoid, lung .d-u 947 to 1407 1 to 461       461/461
(100 %)
1 diff
(99.8 %id)
BM724216 eye, fetal eye .d-u 1015 to 1669 1 to 655   fully sequenced,   655/655
(100 %)
6 diff
(99.1 %id)
BM012515 brain, neuroblastoma, cell line .d-u 1024 to 1751 1 to 729   tiling clone,   729/729
(100 %)
3 diff
(99.6 %id)
TI_59381731   .d-u 1025 to 1751 72 to 799       728/728
(100 %)
2 diff
(99.8 %id)
BQ070814 brain, neuroblastoma, cell line .d-u 1026 to 1759 1 to 740       740/1041
(71 %)
19 diff
(98.2 %id)
R87586 brain .d-u 1058 to 1400 1 to 344       344/346
(99 %)
3 diff
(99.2 %id)
DR003192 fetal brain .d-u 1099 to 1637 9 to 546       538/546
(98 %)
1 diff
(99.9 %id)
AI701523 carcinoid, lung .d-u 1370 to 1896 527 to 1 exact     527/527
(100 %)
0 diff
(100 %id)
AA916700 carcinoid, lung .d-u 1374 to 1896 522 to 1 G72D C74V P75L L76C S78V ...     522/522
(100 %)
2 diff
(99.7 %id)
AI636249 Kidney .d-u 1386 to 1897 532 to 21 S88F AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 512/512
(100 %)
2 diff
(99.7 %id)
AW071669 anaplastic oligodendroglioma, brain .d-u 1395 to 1898 507 to 3 P41T T42H M43H S44E A46S ...     505/507
(99 %)
0 diff
(100 %id)
AW270954 Kidney .d-u 1426 to 1897 492 to 21 S88F AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 472/472
(100 %)
6 diff
(98.8 %id)
AA608629 lung, lung carcinoma .d-u 1435 to 1898 464 to 1 exact tiling clone,   464/464
(100 %)
0 diff
(100 %id)
AI675181 anaplastic oligodendroglioma, brain .d-u 1440 to 1898 461 to 3 exact     459/461
(99 %)
0 diff
(100 %id)
BQ184841 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d-u 1483 to 1897 432 to 19 H10P S24F L29V S33F S53F ... AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 414/414
(100 %)
21 diff
(95.0 %id)
F23308 pectoral muscle (after mastectomy) .d-u 1519 to 1827 1 to 309 exact     309/309
(100 %)
0 diff
(100 %id)
F35793 pectoral muscle (after mastectomy) .d-u 1537 to 1838 1 to 302       302/302
(100 %)
8 diff
(97.4 %id)
F35693 pectoral muscle (after mastectomy) .d-u 1542 to 1877 1 to 336       336/336
(100 %)
1 diff
(99.8 %id)
AA665242 alveolar rhabdomyosarcoma .d-u 1556 to 1897 8 to 349   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 342/349
(97 %)
0 diff
(100 %id)
BM680369 eye, fetal eye .d-u 1639 to 1905 277 to 11   fully sequenced,   267/277
(96 %)
5 diff
(98.2 %id)
DB298324 cerebellum Gene SRRM4, variant not shown              
DA091598 cerebellum Gene SRRM4, variant not shown       capped      
DA502253 brain Gene SRRM4, variant not shown       capped      
DA527698 brain Gene SRRM4, variant not shown       capped      
AA166888   Gene SRRM4, variant not shown       fully sequenced,      
AA167673   Gene SRRM4, variant not shown       fully sequenced,      
AW291542   Gene SRRM4, variant not shown         This clone was ignored    
DA769716 brain Gene SRRM4, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C