To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene BRSK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
70 supporting clones for gene BRSK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF479826 brain .a 1 to 2977 1 to 2977 exact tiling clone, AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 2977/2977
(100 %)
2 diff
(100.0 %id)
AL834275 brain .a 276 to 2977 1 to 2703   available from DKFZ, AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 2703/2703
(100 %)
1 diff
(100.0 %id)
CR746787 eye, retinoblastoma .a 279 to 752 21 to 494       474/494
(95 %)
0 diff
(100 %id)
BQ434571 eye, retinoblastoma .a 279 to 1139 9 to 884       873/889
(98 %)
18 diff
(98.0 %id)
AA326737 brain, cerebellum .a 287 to 579 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
AB058714 brain .a 364 to 2939 1 to 2576   available from KIAA,   2576/2576
(100 %)
0 diff
(100 %id)
H14153 brain .a 412 to 520 1 to 109       109/109
(100 %)
2 diff
(98.2 %id)
BQ337732 nervous_normal .a 550 to 786 237 to 1       237/246
(96 %)
0 diff
(100 %id)
BP251302 hippocampus .a 579 to 1171 1 to 596       596/596
(100 %)
2 diff
(99.7 %id)
BF868432 lung_tumor .a 650 to 1115 11 to 474       464/492
(94 %)
4 diff
(99.2 %id)
BQ717903 sympathetic trunk .a 660 to 1433 1 to 778       778/881
(88 %)
18 diff
(98.0 %id)
CN365650 embryonic stem cells, cell lines H1, H7, andH9 .a 686 to 1356 1 to 671       671/671
(100 %)
0 diff
(100 %id)
BE763502 nervous_tumor .a 773 to 1138 367 to 4       364/367
(99 %)
1 diff
(99.8 %id)
BE699493 nervous_normal .a 798 to 1063 269 to 5       265/273
(97 %)
4 diff
(98.6 %id)
BF931102 nervous_tumor .a 809 to 1144 344 to 9     Submitted on the opposite strand 336/344
(97 %)
0 diff
(100 %id)
BF371253 prostate_normal .a 880 to 1193 333 to 19       315/334
(94 %)
2 diff
(99.5 %id)
BF364892 nervous_normal .a 1033 to 1470 25 to 463       439/463
(94 %)
0 diff
(100 %id)
BG819795 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1034 to 1652 1 to 617       617/658
(93 %)
4 diff
(99.4 %id)
BF529630 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1072 to 1649 1 to 575       575/936
(61 %)
13 diff
(98.7 %id)
AA995681 2 pooled tumors (clear cell type), Kidney .a 1085 to 1178 94 to 1       94/94
(100 %)
1 diff
(99.0 %id)
TI_1948131937   .a 1085 to 1734 122 to 772       651/1288
(50 %)
9 diff
(99.4 %id)
TI_1948131938   .a 1085 to 1734 132 to 789       658/1158
(56 %)
18 diff
(98.5 %id)
TI_1948132268   .a 1085 to 1879 117 to 919       803/1299
(61 %)
32 diff
(97.6 %id)
TI_1948132269   .a 1085 to 1774 132 to 831       700/1137
(61 %)
24 diff
(97.9 %id)
TI_1948132573   .a 1085 to 1634 127 to 679       553/1278
(43 %)
20 diff
(98.5 %id)
TI_1948132884   .a 1085 to 1730 122 to 769       648/1344
(48 %)
27 diff
(98.0 %id)
CV023843 mixed .a 1091 to 1703 1 to 615       615/615
(100 %)
3 diff
(99.6 %id)
CK819107 Islets of Langerhans, Pancreas .a 1451 to 2006 1 to 556       556/556
(100 %)
0 diff
(100 %id)
BM127984 Islets of Langerhans, Pancreas .a 1467 to 1822 1 to 356       356/378
(94 %)
35 diff
(90.8 %id)
CN365648 embryonic stem cells, cell lines H1, H7, andH9 .a 1486 to 1804 17 to 341       325/341
(95 %)
6 diff
(98.3 %id)
TI_1948132270   .a 1740 to 2514 910 to 120       791/1246
(63 %)
25 diff
(98.0 %id)
TI_1948131939   .a 1771 to 2514 873 to 123       751/1275
(58 %)
22 diff
(98.3 %id)
BQ086295 Islets of Langerhans, Pancreas .a 1867 to 2376 1 to 510       510/510
(100 %)
0 diff
(100 %id)
W60403 heart .a 1906 to 2371 14 to 485       472/488
(96 %)
13 diff
(97.4 %id)
AL831945 brain .a 1972 to 2939 1 to 968   available from DKFZ, AAA   968/968
(100 %)
0 diff
(100 %id)
EB386166 eye, optic nerve .a 2123 to 2533 1 to 411       411/411
(100 %)
7 diff
(98.3 %id)
CK819625 Islets of Langerhans, Pancreas .a 2169 to 2554 1 to 387       387/392
(98 %)
2 diff
(99.5 %id)
BM129669 Islets of Langerhans, Pancreas .a 2185 to 2521 1 to 337       337/337
(100 %)
0 diff
(100 %id)
BM675364 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2281 to 2939 678 to 19   AAA   660/660
(100 %)
4 diff
(99.4 %id)
CK819624 Islets of Langerhans, Pancreas .a 2446 to 2939 508 to 14   AAA   495/495
(100 %)
1 diff
(99.8 %id)
DB540677 hippocampus .a 2458 to 2939 1 to 485     Submitted on the opposite strand 485/485
(100 %)
20 diff
(95.9 %id)
CA432345 cell lines, Chondrosarcoma .a 2550 to 3035 506 to 19   AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 488/488
(100 %)
2 diff
(99.6 %id)
BM129382 Islets of Langerhans, Pancreas .a 2551 to 2939 402 to 14   AAA   389/389
(100 %)
0 diff
(100 %id)
BU742909.
matches multiple genes
eye, fetal eye .a 2555 to 2995 441 to 1     also hits gene CERK 441/441
(100 %)
0 diff
(100 %id)
BU739018 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2611 to 2939 347 to 19   AAA   329/336
(97 %)
0 diff
(100 %id)
BU623793 cell lines, Enchondroma .a 2746 to 3036 311 to 19   AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 293/293
(100 %)
1 diff
(99.7 %id)
AI272364 brain, oligodendroglioma .a 2754 to 3036 286 to 1       286/286
(100 %)
8 diff
(97.3 %id)
AL133704 amygdala .a 2767 to 2939 191 to 19   AAA   173/173
(100 %)
1 diff
(99.5 %id)
BX117390 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2808 to 3036 238 to 15   AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 224/224
(100 %)
2 diff
(99.2 %id)
AI621317 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2842 to 3037 194 to 4       191/195
(97 %)
0 diff
(100 %id)
W60123 heart .a 2874 to 2987 114 to 1       114/114
(100 %)
3 diff
(97.4 %id)
AF479827   .b 1 to 3079 1 to 3079 exact tiling clone, AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 3079/3079
(100 %)
0 diff
(100 %id)
NM_032430.1   .b 1 to 3079 1 to 3079 exact RefSeq, AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 3079/3079
(100 %)
0 diff
(100 %id)
AY458602   .b 243 to 3079 15 to 2851 exact AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 2837/2851
(99 %)
0 diff
(100 %id)
AY505124   .b 278 to 2614 1 to 2337 exact     2337/2337
(100 %)
1 diff
(100.0 %id)
CN365649 embryonic stem cells, cell lines H1, H7, andH9 .b 328 to 913 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BC016681 Lymph, lymphoma .c 1 to 2095 19 to 2113 G457A tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (29/29 A in genome downstream of last aligned base) 2095/2095
(100 %)
4 diff
(99.9 %id)
BF796285 lymph, lymphoma, cell line .c 1 to 740 18 to 751       734/753
(97 %)
16 diff
(97.9 %id)
BF960499 nervous_normal .d 1 to 273 1 to 274   tiling clone,   274/275
(99 %)
13 diff
(95.3 %id)
BQ435328 melanotic melanoma, skin .d 218 to 670 1 to 456   tiling clone,   456/925
(49 %)
4 diff
(99.6 %id)
BF529174 anaplastic oligodendroglioma with 1p/19qloss, brain .d 221 to 819 1 to 602       602/898
(67 %)
6 diff
(99.4 %id)
BF529743 anaplastic oligodendroglioma with 1p/19qloss, brain .d 266 to 1018 1 to 752   tiling clone,   752/831
(90 %)
15 diff
(98.2 %id)
DA244674 brain .d 278 to 870 2 to 594   capped   593/593
(100 %)
3 diff
(99.5 %id)
CN485185 eye .e 1 to 540 1 to 540 exact tiling clone,   540/540
(100 %)
0 diff
(100 %id)
BG715357 brain, hypothalamus .f 1 to 546 6 to 551       551/551
(100 %)
2 diff
(99.7 %id)
BI669059 brain, hypothalamus .f 1 to 593 6 to 597   tiling clone,   597/597
(100 %)
3 diff
(99.5 %id)
TI_44345857   .f 1 to 593 90 to 681       596/681
(87 %)
1 diff
(99.9 %id)
AK124999 thalamus Gene BRSK1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB311454 thalamus Gene BRSK1, variant not shown         Suspected internal deletion, this clone was ignored    
DA381736 thalamus Gene BRSK1, variant not shown       capped Suspected internal deletion, this clone was ignored    
BE222941 brain, oligodendroglioma Gene BRSK1, variant not shown         Suspected internal deletion, this clone was ignored    
N83965   Gene BRSK1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI