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Gene KIAA1731andSCARNA9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
160 supporting clones for gene KIAA1731andSCARNA9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DW431426 Liver .a 1 to 255 15 to 269   tiling clone,   255/269
(94 %)
15 diff
(94.5 %id)
DW414641 Liver .a 7 to 304 18 to 315       298/315
(94 %)
10 diff
(96.9 %id)
DW426692 Liver .a 7 to 267 18 to 278       261/281
(92 %)
11 diff
(96.1 %id)
DW427330 Liver .a 7 to 267 18 to 278       261/279
(93 %)
8 diff
(97.2 %id)
NM_033395.1   .a 7 to 8050 1 to 8044 exact RefSeq,   8044/8044
(100 %)
0 diff
(100 %id)
DW409560 Liver .a 12 to 342 9 to 338       330/338
(97 %)
10 diff
(97.1 %id)
DW433171 Liver .a 12 to 266 9 to 263       255/263
(96 %)
8 diff
(97.0 %id)
DW433971 Liver .a 24 to 266 18 to 260       243/260
(93 %)
6 diff
(97.7 %id)
DW451585 Liver .a 30 to 388 18 to 376   tiling clone,   359/376
(95 %)
7 diff
(98.2 %id)
DW451676 Liver .a 31 to 394 12 to 375       364/375
(97 %)
6 diff
(98.4 %id)
DW440443 Liver .a 32 to 411 9 to 387       379/387
(97 %)
7 diff
(98.2 %id)
DW430509 Liver .a 33 to 294 11 to 272       262/272
(96 %)
6 diff
(97.8 %id)
DW420154 Liver .a 36 to 322 15 to 301       287/301
(95 %)
6 diff
(98.1 %id)
DW454836 Liver .a 36 to 198 15 to 178       164/178
(92 %)
9 diff
(95.0 %id)
DW412847 Liver .a 38 to 358 1 to 322       322/322
(100 %)
9 diff
(97.3 %id)
DW418670 Liver .a 38 to 455 1 to 419       419/419
(100 %)
11 diff
(97.4 %id)
DW434253 Liver .a 38 to 295 1 to 259       259/259
(100 %)
10 diff
(96.2 %id)
DW457648 Liver .a 38 to 197 1 to 161       161/161
(100 %)
9 diff
(94.5 %id)
DW420173 Liver .a 42 to 325 18 to 301       284/301
(94 %)
10 diff
(96.7 %id)
DA130812 alzheimer cortex .a 44 to 538 2 to 497   capped   496/496
(100 %)
1 diff
(99.8 %id)
DW434005 Liver .a 45 to 289 8 to 260       209/260
(80 %)
12 diff
(95.4 %id)
DW463314 Liver .a 45 to 153 8 to 117       110/117
(94 %)
7 diff
(94.1 %id)
DW443652 Liver .a 46 to 262 13 to 229       217/229
(94 %)
11 diff
(95.2 %id)
DW412717 Liver .a 51 to 363 11 to 323       313/323
(96 %)
6 diff
(98.2 %id)
DW422243 Liver .a 51 to 335 11 to 295       285/295
(96 %)
6 diff
(98.0 %id)
DW439265 Liver .a 53 to 277 18 to 242       225/242
(92 %)
7 diff
(97.2 %id)
DW433968 Liver .a 54 to 295 19 to 260       242/260
(93 %)
7 diff
(97.4 %id)
AB051518 brain .a 68 to 8050 1 to 7981 R208Q A499E Q511H I2017L Y2018S ... tiling clone, available from KIAA,   7981/7981
(100 %)
6 diff
(100.0 %id)
AA191071   .a 84 to 563 1 to 480       480/484
(99 %)
1 diff
(99.8 %id)
DW421844 Liver .a 230 to 509 17 to 296       280/296
(94 %)
11 diff
(96.3 %id)
DW422203 Liver .a 230 to 508 17 to 295       279/295
(94 %)
7 diff
(97.7 %id)
FN059719 breast carcinoma .a 300 to 410 1 to 111       111/111
(100 %)
0 diff
(100 %id)
BQ710576 Spleen .a 607 to 1399 1 to 797       797/869
(91 %)
16 diff
(98.2 %id)
BQ894839 Spleen .a 607 to 1517 1 to 914       913/914
(99 %)
11 diff
(98.8 %id)
CB145916 Liver .a 1141 to 1589 1 to 449       449/449
(100 %)
0 diff
(100 %id)
DB301042 alzheimer cortex .a 1271 to 1799 529 to 1       529/538
(98 %)
2 diff
(99.7 %id)
AA191570   .a 1380 to 1796 417 to 1       417/417
(100 %)
1 diff
(99.8 %id)
AW183253 pooled .a 1527 to 1822 1 to 296   tiling clone, Submitted on the opposite strand 296/296
(100 %)
3 diff
(99.0 %id)
EH345011   .a 2457 to 2535 1 to 79       79/79
(100 %)
0 diff
(100 %id)
BQ230114 embryonal carcinoma, cell line, testis .a 3195 to 3842 1 to 653       653/1013
(64 %)
28 diff
(97.3 %id)
DA766850 tongue .a 4154 to 4714 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BF379512 uterus_tumor .a 4266 to 4605 12 to 350       339/370
(91 %)
3 diff
(99.2 %id)
BG167977 hypernephroma, cell line, Kidney .a 4289 to 4847 82 to 648       567/648
(87 %)
25 diff
(96.2 %id)
BF326816 breast_normal .a 4347 to 4670 330 to 4       327/330
(99 %)
0 diff
(100 %id)
BQ377657 uterus .a 4347 to 4628 292 to 7       286/292
(97 %)
0 diff
(100 %id)
BQ933718 large cell carcinoma, lung .a 4522 to 5491 1 to 969       969/970
(99 %)
21 diff
(97.9 %id)
DA464356   .a 4608 to 5156 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA802880 brain .a 4724 to 5013 2 to 291   capped   290/290
(100 %)
2 diff
(99.4 %id)
DB209215 trachea .a 4847 to 5360 2 to 518   capped   517/517
(100 %)
5 diff
(99.1 %id)
BF335179 colon .a 5069 to 5344 279 to 4       276/282
(97 %)
0 diff
(100 %id)
BF335219 colon .a 5069 to 5368 300 to 1       300/303
(99 %)
0 diff
(100 %id)
BQ317743 colon .a 5069 to 5368 300 to 1       300/303
(99 %)
0 diff
(100 %id)
DB079406 testis .a 5165 to 5742 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BY797433 eye .a 5618 to 6298 1 to 681       681/681
(100 %)
0 diff
(100 %id)
BQ897973 dorsal root ganglia .a 5641 to 6439 1 to 811       811/1004
(80 %)
38 diff
(96.3 %id)
AK095859   .a 5821 to 8050 1 to 2230   tiling clone, available from FLJ,   2230/2230
(100 %)
1 diff
(100.0 %id)
DA552032   .a 5822 to 6335 2 to 517   capped   516/516
(100 %)
2 diff
(99.7 %id)
BF331399 breast .a 5904 to 6215 18 to 329       312/350
(89 %)
8 diff
(97.8 %id)
CV335517 breast .a 5904 to 6215 18 to 329       312/350
(89 %)
8 diff
(97.8 %id)
DR763345 embryonic stem .a 6117 to 6964 1 to 848       848/848
(100 %)
0 diff
(100 %id)
DB325497 tongue .a 6239 to 6815 577 to 1       577/577
(100 %)
1 diff
(99.9 %id)
BU155237 melanotic melanoma, skin .a 6266 to 7121 1 to 860       860/860
(100 %)
6 diff
(99.4 %id)
DA042906 bladder .a 6289 to 6755 2 to 468   capped   467/467
(100 %)
1 diff
(99.8 %id)
BI766234 pooled lung and spleen .a 6400 to 6987 1 to 603       603/958
(62 %)
21 diff
(97.9 %id)
TI_57177876   .a 6400 to 6987 69 to 671       603/1026
(58 %)
27 diff
(97.4 %id)
BE538374 cervix .a 6762 to 7395 1 to 633       633/633
(100 %)
2 diff
(99.7 %id)
EB386021 eye, optic nerve .a 6901 to 7715 1 to 815       815/815
(100 %)
3 diff
(99.7 %id)
W32363 heart .a 7051 to 7372 1 to 329       329/330
(99 %)
13 diff
(96.1 %id)
CN389153 embryonic stem cells, cell lines H1, H7, andH9 .a 7065 to 7766 1 to 702       702/702
(100 %)
1 diff
(99.9 %id)
TI_149308504   .a 7141 to 7856 799 to 85   AAA   715/935
(76 %)
3 diff
(99.7 %id)
AA402575.
matches multiple genes
  .a 7145 to 7356 1 to 212     also hits gene PPP2CB 212/212
(100 %)
1 diff
(99.6 %id)
BM979703 lung, Primary Lung Epithelial Cells .a 7148 to 7856 724 to 16   AAA   709/713
(99 %)
2 diff
(99.8 %id)
BU173318 leiomyosarcoma, uterus .a 7306 to 8049 1 to 744       744/746
(99 %)
4 diff
(99.5 %id)
AA442603   .a 7409 to 7755 1 to 347   fully sequenced,   347/347
(100 %)
3 diff
(99.2 %id)
BX103082   .a 7410 to 8045 1 to 637       637/637
(100 %)
2 diff
(99.7 %id)
AA460502.
matches multiple genes
  .a 7427 to 7772 1 to 346     also hits gene DPP7 346/346
(100 %)
2 diff
(99.5 %id)
DB318376   .a 7533 to 8050 518 to 1       518/518
(100 %)
0 diff
(100 %id)
AI627965 Kidney .a 7538 to 8052 515 to 1       515/515
(100 %)
1 diff
(99.9 %id)
TI_154000596   .a 7549 to 8049 593 to 93   AAA   501/501
(100 %)
0 diff
(100 %id)
AI076767   .a 7582 to 8052 475 to 5       471/475
(99 %)
3 diff
(99.4 %id)
BF826662 head_normal .a 7606 to 7844 238 to 5     Submitted on the opposite strand 236/263
(89 %)
12 diff
(95.5 %id)
CN389152 embryonic stem cells, DMSO-treated H9 cellline .a 7617 to 7976 9 to 368       360/368
(97 %)
6 diff
(98.4 %id)
R54739 breast .a 7623 to 7856 1 to 235   fully sequenced,   235/235
(100 %)
1 diff
(99.6 %id)
AA461073   .a 7623 to 8052 433 to 4       430/433
(99 %)
1 diff
(99.8 %id)
BF826539 head_normal .a 7632 to 7851 220 to 3     Submitted on the opposite strand 218/220
(99 %)
1 diff
(99.6 %id)
AW818266 stomach .a 7646 to 7850 1 to 205       205/210
(97 %)
3 diff
(98.6 %id)
W01872 heart .a 7653 to 8050 402 to 1       402/406
(99 %)
8 diff
(98.1 %id)
AA572740   .a 7659 to 8050 414 to 23   AAA   392/392
(100 %)
0 diff
(100 %id)
AA568107   .a 7668 to 8050 405 to 23   AAA   383/383
(100 %)
0 diff
(100 %id)
AA285174 germinal center B cell .a 7686 to 8052 373 to 7   tiling clone,   367/373
(98 %)
0 diff
(100 %id)
AA436845   .a 7694 to 8050 369 to 13   fully sequenced, AAA   357/357
(100 %)
0 diff
(100 %id)
R54727 breast .a 7826 to 8051 226 to 1   fully sequenced,   226/226
(100 %)
0 diff
(100 %id)
AW275178 lung, two pooled squamous cell carcinomas .a 7877 to 8052 183 to 8       176/183
(96 %)
0 diff
(100 %id)
BM818365 stomach .a 7919 to 8050 1 to 132   AAA   132/132
(100 %)
0 diff
(100 %id)
AK095218   .b 1 to 2889 2 to 2890 F68L E617V tiling clone, available from FLJ,   2890/2890
(100 %)
2 diff
(100.0 %id)
DA419990 cord Blood .b 1 to 576 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BM820895 stomach .b 2762 to 2889 1 to 125   AAA   125/125
(100 %)
3 diff
(97.6 %id)
EH328847   .b 2804 to 2891 1 to 88       88/88
(100 %)
2 diff
(97.8 %id)
BY998729   .b 2814 to 2938 125 to 1       125/127
(98 %)
0 diff
(100 %id)
BY998803   .b 2814 to 2938 124 to 1       124/126
(98 %)
4 diff
(96.9 %id)
BY999449   .b 2844 to 2938 95 to 1       95/96
(98 %)
2 diff
(98.0 %id)
AW805761 uterus .b 2847 to 2954 1 to 108   tiling clone,   108/108
(100 %)
0 diff
(100 %id)
AK098232 uterus .c 1 to 2293 2 to 2294   tiling clone, available from FLJ,   2294/2294
(100 %)
12 diff
(99.5 %id)
DB251519 uterus .c 1 to 552 2 to 554   capped   553/553
(100 %)
6 diff
(99.0 %id)
DA140262 alzheimer cortex .c 176 to 727 2 to 552   tiling clone, capped   551/551
(100 %)
6 diff
(99.0 %id)
AA159634   .c 773 to 1230 1 to 459   tiling clone,   459/461
(99 %)
2 diff
(99.6 %id)
W79020 liver and spleen .c 1580 to 1809 1 to 231       231/231
(100 %)
1 diff
(99.6 %id)
BP872343 embryonal kidney .c 1639 to 2219 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
AA159635   .c 1806 to 2289 483 to 1       486/484
(100 %)
6 diff
(98.8 %id)
TI_149278035   .c 1880 to 2569 777 to 88   tiling clone, AAA   690/691
(99 %)
2 diff
(99.8 %id)
BU678167 lung .c 1902 to 2569 686 to 19   AAA   668/670
(99 %)
1 diff
(99.9 %id)
W80413 liver and spleen .c 2053 to 2570 519 to 1   tiling clone,   519/520
(99 %)
5 diff
(99.1 %id)
AI886266 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2185 to 2569 396 to 11   AAA   386/386
(100 %)
3 diff
(99.3 %id)
BY999005   .c 2407 to 2618 214 to 1       214/217
(98 %)
11 diff
(95.0 %id)
D20341   .c 2415 to 2618 204 to 1   tiling clone,   204/206
(99 %)
0 diff
(100 %id)
AK057804 cerebellum .d 1 to 1443 1 to 1443 E286V tiling clone, available from FLJ,   1443/1443
(100 %)
1 diff
(100.0 %id)
BG570424 lung .d 539 to 1286 1 to 752       752/752
(100 %)
11 diff
(98.6 %id)
AW592962 pooled .e 1 to 389 1 to 390     Submitted on the opposite strand 390/390
(100 %)
5 diff
(98.8 %id)
AW976146   .e 3 to 729 27 to 753 A42E L209V F238C Q242R tiling clone,   727/757
(96 %)
12 diff
(98.5 %id)
AW207289   .e 3 to 427 20 to 444   tiling clone, Submitted on the opposite strand 425/444
(95 %)
7 diff
(98.5 %id)
TI_153991472   .e 3 to 453 80 to 530     Submitted on the opposite strand 451/530
(85 %)
7 diff
(98.7 %id)
AA747565 germinal center B cell .e 10 to 491 1 to 482     Submitted on the opposite strand 482/482
(100 %)
1 diff
(99.8 %id)
DN996733 breast cancer, Mammary gland (cancer tissue) .f 1 to 498 9 to 506   tiling clone,   498/506
(98 %)
6 diff
(98.9 %id)
DB171629 kidney, tumor tissue .f 25 to 607 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AW337911 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .f 279 to 633 355 to 1   tiling clone,   355/355
(100 %)
0 diff
(100 %id)
AI808793 pooled .g 1 to 459 460 to 1 K60X tiling clone,   460/460
(100 %)
6 diff
(98.7 %id)
AA948093 pooled .g 20 to 460 441 to 1   tiling clone,   441/441
(100 %)
1 diff
(99.8 %id)
BE670452 carcinoid, lung .h 1 to 456 456 to 1 A97E tiling clone,   456/456
(100 %)
1 diff
(99.8 %id)
BE551350 carcinoid, lung .h 191 to 453 264 to 2       263/264
(99 %)
1 diff
(99.7 %id)
TI_149301934   .i 1 to 791 884 to 108 E2G R3I S4P H5P Q6G ... tiling clone, AAA   698/876
(79 %)
62 diff
(93.0 %id)
BE005307 breast_normal .j 1 to 259 263 to 7 T2S L3P R79E E80R T81Q ... tiling clone, Submitted on the opposite strand 259/265
(97 %)
4 diff
(98.5 %id)
DW425386 Liver .k 1 to 235 18 to 256 exact tiling clone, AAA   239/256
(93 %)
6 diff
(97.7 %id)
DB096920 testis .l-u 1 to 577 2 to 579   tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
BX953920   .l-u 43 to 522 1 to 480   tiling clone,   480/480
(100 %)
1 diff
(99.8 %id)
BX103619 germinal center B cell .l-u 287 to 749 1 to 463   tiling clone,   463/463
(100 %)
0 diff
(100 %id)
AA974476 germinal center B cell .l-u 455 to 822 396 to 29 L94P Q96T Q98H tiling clone, AAA   368/368
(100 %)
7 diff
(98.1 %id)
BU619319 Cell Line, Chondrosarcoma .m-u 1 to 572 588 to 17 exact tiling clone, AAA   572/584
(97 %)
1 diff
(99.9 %id)
DW454270 Liver .n-u 1 to 157 1 to 155       155/182
(85 %)
20 diff
(89.1 %id)
DW454889 Liver .n-u 1 to 128 1 to 127   AAA   127/127
(100 %)
8 diff
(93.8 %id)
DW454890 Liver .n-u 1 to 128 1 to 127   AAA   127/127
(100 %)
9 diff
(93.0 %id)
DW454891 Liver .n-u 1 to 127 1 to 126   AAA   126/126
(100 %)
9 diff
(92.9 %id)
DW455069 Liver .n-u 1 to 129 1 to 128   AAA   128/128
(100 %)
11 diff
(91.5 %id)
DW461417 Liver .n-u 1 to 129 1 to 128       128/128
(100 %)
9 diff
(93.0 %id)
AV737883 cord Blood .n-u 14 to 367 42 to 391 S46L Q48N tiling clone, AAA   350/391
(89 %)
6 diff
(98.5 %id)
AI630044 blood .n-u 17 to 193 178 to 1       178/184
(96 %)
2 diff
(99.0 %id)
AV758022 bone marrow .n-u 17 to 122 90 to 195   AAA   106/114
(92 %)
0 diff
(100 %id)
BG943685 blood .n-u 18 to 156 1 to 137       137/139
(98 %)
11 diff
(92.1 %id)
NR_002569.1   .n-u 18 to 370 1 to 353 I45X RefSeq,   353/353
(100 %)
0 diff
(100 %id)
DW458822 Liver .n-u 35 to 130 6 to 101   AAA   96/101
(95 %)
6 diff
(94.1 %id)
DW459238 Liver .n-u 35 to 162 6 to 131       126/149
(84 %)
6 diff
(96.0 %id)
C19000 placenta .n-u 43 to 368 1 to 328 Y15C A16T V18M F19C I20L ...     328/328
(100 %)
2 diff
(99.4 %id)
DW459288 Liver .n-u 45 to 128 15 to 98   AAA   84/98
(85 %)
6 diff
(93.9 %id)
BE833073 ovary .n-u 59 to 305 2 to 246       245/247
(99 %)
13 diff
(94.8 %id)
DA972573 synovial membrane tissue from rheumatioidarthritis .n-u 61 to 373 2 to 310 V14T Y15H A16M H17C V18L ... capped   309/546
(56 %)
7 diff
(98.8 %id)
AA705497 liver and spleen .n-u 181 to 369 189 to 1       189/242
(78 %)
0 diff
(100 %id)
DW417890 Liver .n-u 253 to 540 17 to 304   tiling clone,   288/304
(94 %)
6 diff
(98.1 %id)
EH347411   .n-u 305 to 374 1 to 70       70/75
(93 %)
1 diff
(98.7 %id)
EH348052   .n-u 305 to 373 1 to 69       69/73
(94 %)
2 diff
(97.3 %id)
BC017394 Kidney, hypernephroma .o 1 to 540 1 to 540   available from MGC, AAA   540/540
(100 %)
2 diff
(99.7 %id)
BC015989 Bone marrow, acute myelogenous leukemia .o 1 to 540 1 to 540 L2V tiling clone, available from MGC, AAA   540/540
(100 %)
2 diff
(99.7 %id)
BF541560 hypernephroma, Kidney .o 4 to 551 1 to 554   available from MGC,   554/793
(69 %)
28 diff
(96.5 %id)
BG944441 blood .o 27 to 492 1 to 466   AAA   466/466
(100 %)
1 diff
(99.8 %id)
BF105858 lung .p-u 1 to 448 1 to 453 I4M V5S T6H L7Y H9I ... tiling clone,   453/455
(99 %)
10 diff
(97.9 %id)
EC544417 Prostate .q-u 1 to 108 1 to 108 exact tiling clone,   108/108
(100 %)
0 diff
(100 %id)
CB150534 cervix, Uterine Gene KIAA1731andSCARNA9, variant not shown         Suspected internal deletion, this clone was ignored    
DB320968 Kidney Gene KIAA1731andSCARNA9, variant not shown         This clone was ignored    
DA634391 Kidney Gene KIAA1731andSCARNA9, variant not shown       capped This clone was ignored    
BX480607   Gene KIAA1731andSCARNA9, variant not shown              
AI916163 colon, colon tumor, RER+ Gene KIAA1731andSCARNA9, variant not shown         This clone was ignored    
DB135945 thymus Gene KIAA1731andSCARNA9, variant not shown       capped This clone was ignored    
DB344991 thymus Gene KIAA1731andSCARNA9, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m-u, .n-u, .o, .p-u, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C