To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene ARFIP1andFHDC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
440 supporting clones for gene ARFIP1andFHDC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_033393.2   .a 1 to 6480 1 to 6480 exact RefSeq,   6480/6480
(100 %)
1 diff
(100.0 %id)
BQ082418 Ascites, stomach .a 1 to 230 1 to 230   tiling clone,   230/230
(100 %)
1 diff
(99.6 %id)
AB051514   .a 114 to 6470 1 to 6356   tiling clone, available from KIAA,   6356/6356
(100 %)
8 diff
(99.9 %id)
DA460832 tongue, tumor tissue .a 898 to 1468 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA112013 cerebellum .a 961 to 1546 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
AL706590 human skeletal muscle .a 999 to 1604 1 to 606       606/606
(100 %)
0 diff
(100 %id)
EH321344   .a 1176 to 1253 1 to 78       78/78
(100 %)
0 diff
(100 %id)
DB093918 testis .a 1301 to 1837 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BY798733 eye .a 1441 to 2059 1 to 619       619/619
(100 %)
0 diff
(100 %id)
DA491022 brain .a 1820 to 2397 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DB237394 trachea .a 1822 to 2386 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
CN255507 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2155 to 2837 1 to 683       683/683
(100 %)
0 diff
(100 %id)
BX480801   .a 2211 to 2676 1 to 466       466/466
(100 %)
1 diff
(99.8 %id)
BF367070 placenta_normal .a 2320 to 2568 247 to 1       247/288
(85 %)
4 diff
(98.7 %id)
DB241281 trachea .a 2893 to 3446 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
AL597230   .a 2906 to 3456 1 to 551       551/551
(100 %)
3 diff
(99.5 %id)
DB155895 thymus .a 3020 to 3541 2 to 524   capped   523/523
(100 %)
3 diff
(99.5 %id)
AW952864   .a 3386 to 3749 1 to 365       365/499
(73 %)
5 diff
(99.0 %id)
TI_57181244   .a 3706 to 4403 65 to 763       699/787
(88 %)
6 diff
(99.3 %id)
BI766662 pooled lung and spleen .a 3712 to 4403 1 to 693   tiling clone,   693/717
(96 %)
33 diff
(95.4 %id)
CN268026 embryonic stem cells, cell lines H1, H7, andH9 .a 4093 to 4251 1 to 159       159/159
(100 %)
2 diff
(98.8 %id)
BX470323 Liver .a 4262 to 4664 171 to 573       403/573
(70 %)
6 diff
(99.0 %id)
DA081537 cerebellum .a 4410 to 4987 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
BE065431 breast .a 4437 to 4988 15 to 560       546/562
(97 %)
10 diff
(98.3 %id)
AW748999 breast .a 4481 to 5112 634 to 1       634/637
(99 %)
11 diff
(98.3 %id)
AK172734 placenta .a 4546 to 6454 1 to 1908   available from KIAA,   1908/1908
(100 %)
6 diff
(99.7 %id)
CA396747 eye, RPE/choroid .a 4549 to 5003 1 to 455       455/455
(100 %)
3 diff
(99.4 %id)
BE741606 adenocarcinoma cell line, ovary .a 4731 to 5567 1 to 847       847/907
(93 %)
27 diff
(97.1 %id)
BI767383 pooled lung and spleen .a 4904 to 5623 1 to 718       718/718
(100 %)
8 diff
(98.9 %id)
TI_57181323   .a 4905 to 5623 73 to 789       717/789
(90 %)
6 diff
(99.3 %id)
BE065552 breast .a 4914 to 5117 16 to 219       204/224
(91 %)
2 diff
(99.2 %id)
R81684 placenta .a 4930 to 5310 1 to 396       396/435
(91 %)
19 diff
(95.7 %id)
BE065551 breast .a 4939 to 5117 1 to 179       179/184
(97 %)
3 diff
(98.4 %id)
BU161362 melanotic melanoma, skin .a 4996 to 5863 1 to 875       875/876
(99 %)
15 diff
(98.3 %id)
H83578 melanocyte .a 5005 to 5407 1 to 406       406/408
(99 %)
8 diff
(98.1 %id)
T83061 liver and spleen .a 5158 to 5536 1 to 392   tiling clone,   392/399
(98 %)
16 diff
(96.0 %id)
CD724128 eye, lacrimal gland .a 5287 to 5890 1 to 604       604/604
(100 %)
6 diff
(99.1 %id)
DN917576   .a 5295 to 5853 18 to 572       555/572
(97 %)
6 diff
(99.0 %id)
DN920748   .a 5304 to 5551 1 to 246       246/246
(100 %)
2 diff
(99.2 %id)
FN058425 breast carcinoma .a 5309 to 5406 97 to 1     Submitted on the opposite strand 97/100
(97 %)
1 diff
(99.0 %id)
BE930482 placenta_normal .a 5406 to 5815 410 to 1       410/410
(100 %)
14 diff
(96.6 %id)
W68234 heart .a 5407 to 5855 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
CX782413 human embryonic stem cells .a 5432 to 6267 2 to 835     Submitted on the opposite strand 834/835
(99 %)
6 diff
(99.3 %id)
CA442208 lung, Lung Focal Fibrosis .a 5432 to 5910 2 to 480     Submitted on the opposite strand 479/480
(99 %)
6 diff
(98.8 %id)
BG010270 placenta_normal .a 5435 to 5674 1 to 239       239/243
(98 %)
5 diff
(98.0 %id)
BF512371   .a 5440 to 5949 12 to 521     Submitted on the opposite strand 510/521
(97 %)
6 diff
(98.9 %id)
H56655 liver and spleen .a 5456 to 5797 1 to 352     Submitted on the opposite strand 352/393
(89 %)
12 diff
(97.0 %id)
T83566 liver and spleen .a 5478 to 5768 1 to 295       295/370
(79 %)
6 diff
(98.4 %id)
R09902 liver and spleen .a 5478 to 5823 1 to 352       352/418
(84 %)
12 diff
(97.2 %id)
H79699 liver and spleen .a 5504 to 5831 1 to 328       328/330
(99 %)
2 diff
(99.4 %id)
W95217 heart .a 5517 to 5995 1 to 482       482/486
(99 %)
7 diff
(98.6 %id)
BM697919 eye, fetal eyes .a 5593 to 6109 1 to 517       517/517
(100 %)
4 diff
(99.3 %id)
FN072169 breast carcinoma .a 5682 to 5744 1 to 61       61/61
(100 %)
2 diff
(96.8 %id)
BX095228 liver and spleen .a 5694 to 6455 771 to 10     Submitted on the opposite strand 762/771
(98 %)
0 diff
(100 %id)
AA441880   .a 5706 to 6017 1 to 313   fully sequenced,   313/313
(100 %)
5 diff
(98.5 %id)
W78812 liver and spleen .a 5712 to 6199 1 to 489       489/489
(100 %)
8 diff
(98.4 %id)
DB510138 testis .a 5717 to 6398 1 to 683     Submitted on the opposite strand 683/685
(99 %)
5 diff
(99.3 %id)
H03628 placenta .a 5786 to 6155 1 to 389   fully sequenced,   389/389
(100 %)
13 diff
(96.7 %id)
CX782497 human embryonic stem cells .a 5791 to 6455 695 to 31     Submitted on the opposite strand 665/695
(95 %)
0 diff
(100 %id)
H02094 placenta .a 5805 to 6054 1 to 252   fully sequenced,   252/252
(100 %)
6 diff
(97.7 %id)
H84425 melanocyte .a 5812 to 6255 10 to 466   fully sequenced,   457/466
(98 %)
26 diff
(94.5 %id)
R73007 placenta .a 5848 to 6222 1 to 384       384/394
(97 %)
14 diff
(96.5 %id)
TI_149283564   .a 5849 to 6454 668 to 63   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 606/713
(84 %)
5 diff
(99.3 %id)
TI_149284837   .a 5849 to 6454 688 to 84   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 605/1097
(55 %)
10 diff
(99.1 %id)
AI658795 Prostate .a 5897 to 6068 259 to 88       172/259
(66 %)
0 diff
(100 %id)
BU680205 lung, Primary Lung Epithelial Cells .a 5916 to 6454 555 to 17   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 539/539
(100 %)
1 diff
(99.9 %id)
AA527080 colon .a 5917 to 6454 530 to 1       530/533
(99 %)
18 diff
(96.7 %id)
BE645694 Prostate .a 5931 to 6454 524 to 1       524/524
(100 %)
2 diff
(99.7 %id)
TI_151710140   .a 5933 to 6454 614 to 97   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 518/726
(71 %)
7 diff
(99.1 %id)
CN255506 embryonic stem cells, cell lines H1, H7, andH9 .a 5958 to 6354 1 to 398       398/398
(100 %)
4 diff
(99.0 %id)
BF594128 brain, glioblastoma (pooled) .a 5958 to 6447 498 to 9       490/498
(98 %)
0 diff
(100 %id)
AA779932 liver and spleen .a 5962 to 6454 506 to 15   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 492/492
(100 %)
1 diff
(99.8 %id)
AA855140 parathyroid gland, parathyroid tumor .a 5964 to 6423 492 to 34       459/492
(93 %)
0 diff
(100 %id)
AW194351 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 5964 to 6459 509 to 14       496/509
(97 %)
0 diff
(100 %id)
BF001169 Prostate .a 5964 to 6454 502 to 12   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
BF109735 pooled .a 5974 to 6455 490 to 9       482/490
(98 %)
0 diff
(100 %id)
AW069784 bone marrow stroma .a 5977 to 6454 498 to 21   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 478/478
(100 %)
0 diff
(100 %id)
AI202042 anaplastic oligodendroglioma, brain .a 5977 to 6458 482 to 1       482/482
(100 %)
0 diff
(100 %id)
AI990994 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 5981 to 6455 476 to 2       475/476
(99 %)
0 diff
(100 %id)
AI143847 heart .a 5983 to 6455 473 to 1       473/473
(100 %)
0 diff
(100 %id)
AI128373 placenta .a 5983 to 6455 477 to 5       473/477
(99 %)
0 diff
(100 %id)
AW195552 pooled .a 5984 to 6454 472 to 1       472/472
(100 %)
6 diff
(98.8 %id)
AI128364 placenta .a 5985 to 6455 475 to 5       471/475
(99 %)
0 diff
(100 %id)
AI421235 brain, glioblastoma (pooled) .a 5986 to 6454 469 to 1       469/469
(100 %)
0 diff
(100 %id)
BU680689 lung, Primary Lung Epithelial Cells .a 5988 to 6454 483 to 17   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 467/467
(100 %)
2 diff
(99.6 %id)
AA143612 colon, tumor .a 5992 to 6454 477 to 12   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 466/466
(100 %)
5 diff
(99.0 %id)
AI151527 placenta .a 5994 to 6453 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
H82711 melanocyte .a 6006 to 6442 446 to 1       446/447
(99 %)
12 diff
(97.4 %id)
AI219401 placenta .a 6012 to 6455 441 to 1       441/441
(100 %)
3 diff
(99.4 %id)
AI275577 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6013 to 6454 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
AA441818   .a 6016 to 6455 443 to 4   fully sequenced,   440/443
(99 %)
0 diff
(100 %id)
H56734 liver and spleen .a 6019 to 6453 445 to 1     Submitted on the opposite strand 445/455
(97 %)
13 diff
(97.2 %id)
DB315402 brain .a 6026 to 6454 429 to 1       429/432
(99 %)
0 diff
(100 %id)
AA908252 carcinoid, lung .a 6026 to 6454 429 to 1       429/429
(100 %)
0 diff
(100 %id)
W68235 heart .a 6027 to 6454 429 to 1       429/430
(99 %)
1 diff
(99.8 %id)
AI278683 carcinoid, lung .a 6028 to 6454 437 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 427/427
(100 %)
1 diff
(99.8 %id)
T90526 liver and spleen .a 6036 to 6395 371 to 3       369/371
(99 %)
0 diff
(100 %id)
H01997 placenta .a 6042 to 6450 415 to 5   fully sequenced,   411/415
(99 %)
0 diff
(100 %id)
AA676541 liver and spleen .a 6042 to 6454 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AI192236 uterus .a 6049 to 6452 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
AI299109 carcinoid, lung .a 6050 to 6453 405 to 2       404/405
(99 %)
0 diff
(100 %id)
FN050756 breast carcinoma .a 6063 to 6161 1 to 99       99/99
(100 %)
0 diff
(100 %id)
AA862317 carcinoid, lung .a 6070 to 6454 395 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 385/385
(100 %)
0 diff
(100 %id)
H94868 liver and spleen .a 6089 to 6455 372 to 2       371/379
(97 %)
0 diff
(100 %id)
AA884790 pooled .a 6100 to 6455 356 to 1       356/356
(100 %)
0 diff
(100 %id)
R12503 liver and spleen .a 6106 to 6455 363 to 2       362/407
(88 %)
0 diff
(100 %id)
AA774498 heart .a 6108 to 6455 348 to 1       348/348
(100 %)
0 diff
(100 %id)
AA633305 colon, colon tumor RER+ .a 6114 to 6455 349 to 8       342/349
(97 %)
0 diff
(100 %id)
H52108 liver and spleen .a 6118 to 6433 321 to 1       321/364
(88 %)
8 diff
(97.9 %id)
R81669 placenta .a 6120 to 6439 328 to 2       327/339
(96 %)
0 diff
(100 %id)
H03629 placenta .a 6125 to 6454 341 to 1   fully sequenced,   341/341
(100 %)
11 diff
(96.8 %id)
AA904994 pooled .a 6155 to 6455 301 to 1       301/301
(100 %)
1 diff
(99.7 %id)
AI219227 placenta .a 6167 to 6455 293 to 5       289/293
(98 %)
0 diff
(100 %id)
AI444952 colon, moderately-differentiated adenocarcinoma .a 6167 to 6400 252 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 234/234
(100 %)
0 diff
(100 %id)
AI080080   .a 6169 to 6455 288 to 2       287/288
(99 %)
0 diff
(100 %id)
AI567570 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 6178 to 6454 292 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 279/279
(100 %)
2 diff
(99.3 %id)
W94691 heart .a 6183 to 6454 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
AA342086 Spleen .a 6223 to 6454 232 to 1       232/232
(100 %)
0 diff
(100 %id)
BP426100 small intestine .a 6223 to 6452 1 to 230     Submitted on the opposite strand 230/238
(96 %)
1 diff
(99.6 %id)
H84426 melanocyte .a 6240 to 6432 193 to 1   fully sequenced,   193/193
(100 %)
2 diff
(99.0 %id)
FN058811 breast carcinoma .a 6276 to 6395 1 to 120       120/120
(100 %)
0 diff
(100 %id)
N58039 liver and spleen .a 6278 to 6454 177 to 1       177/177
(100 %)
0 diff
(100 %id)
W80711 liver and spleen .a 6292 to 6480 189 to 1   tiling clone,   189/189
(100 %)
0 diff
(100 %id)
H79700 liver and spleen .a 6317 to 6432 116 to 1       116/116
(100 %)
0 diff
(100 %id)
DC344352 thalamus .b 1 to 569 1 to 569   tiling clone,   569/569
(100 %)
2 diff
(99.7 %id)
DC345667 tongue, tumor tissue .b 81 to 671 1 to 592       592/592
(100 %)
2 diff
(99.7 %id)
DC418146 trachea .b 83 to 648 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
BP379269 uterus .b 83 to 664 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BI551923 brain, hippocampus .b 94 to 950 1 to 857       857/857
(100 %)
22 diff
(97.5 %id)
DC310422 cerebellum .b 99 to 615 1 to 518       518/518
(100 %)
2 diff
(99.7 %id)
DC328771 corpus callosum .b 99 to 673 1 to 575       575/575
(100 %)
0 diff
(100 %id)
TI_44171635   .b 99 to 950 90 to 941       852/941
(90 %)
23 diff
(97.6 %id)
NM_001025595.1   .b 99 to 3189 1 to 3091   RefSeq,   3091/3091
(100 %)
0 diff
(100 %id)
DC391523 Spleen .b 99 to 674 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DC409103 thymus .b 99 to 680 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC418628 trachea .b 99 to 676 1 to 578   tiling clone,   578/578
(100 %)
0 diff
(100 %id)
DC407765 thymus .b 101 to 644 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DC360575   .b 104 to 611 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
DC346238 tongue, tumor tissue .b 105 to 681 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DC401535 testis .b 105 to 563 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
DC331667 hippocampus .b 108 to 679 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
BG699989 brain, hippocampus .b 115 to 783 1 to 670       670/670
(100 %)
5 diff
(99.3 %id)
BG699844 brain, hippocampus .b 115 to 858 1 to 746       746/746
(100 %)
18 diff
(97.6 %id)
BI546100 brain, hippocampus .b 115 to 858 1 to 746       746/747
(99 %)
14 diff
(98.2 %id)
DB468083 hippocampus .b 120 to 556 1 to 438       438/438
(100 %)
5 diff
(98.9 %id)
TI_44166037   .b 120 to 858 97 to 837       741/838
(88 %)
15 diff
(98.3 %id)
DC376120 brain .b 120 to 590 1 to 471       471/471
(100 %)
0 diff
(100 %id)
DC346451 tongue, tumor tissue .b 121 to 618 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
DB457974 testis .b 121 to 617 1 to 497       497/497
(100 %)
0 diff
(100 %id)
DC384004 Prostate .b 126 to 693 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BM551373 melanotic melanoma, skin .b 130 to 967 25 to 869       845/1044
(80 %)
28 diff
(97.4 %id)
CA405718 adipose .b 132 to 262 1 to 132       132/132
(100 %)
2 diff
(98.5 %id)
DB450643 testis .b 133 to 567 1 to 437       437/437
(100 %)
15 diff
(96.6 %id)
DB118015 thymus .b 133 to 553 2 to 422   capped   421/421
(100 %)
1 diff
(99.8 %id)
BI838716 pooled pancreas and spleen .b 141 to 885 19 to 765       747/925
(80 %)
21 diff
(97.8 %id)
TI_57162148   .b 141 to 885 19 to 765       747/925
(80 %)
21 diff
(97.8 %id)
BU166318 melanotic melanoma, skin .b 143 to 954 1 to 818       818/837
(97 %)
11 diff
(98.7 %id)
BE538888 cervix .b 147 to 909 1 to 803       716/806
(88 %)
66 diff
(91.9 %id)
CF619345 Pooled Chondrosarcoma Tumor cells .b 148 to 951 8 to 822       815/912
(89 %)
27 diff
(97.1 %id)
AW408785 lymph .b 151 to 570 1 to 420       420/420
(100 %)
4 diff
(99.1 %id)
DC363842   .b 203 to 732 1 to 530       530/530
(100 %)
0 diff
(100 %id)
CA391156 eye, RPE/choroid .b 268 to 745 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
DC364217   .b 281 to 860 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DC421119 uterus .b 281 to 857 1 to 577       577/577
(100 %)
0 diff
(100 %id)
CB127228 cervix, Uterine .b 283 to 855 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
BE622430 melanotic melanoma, skin .b 287 to 1008 1 to 707       707/935
(75 %)
30 diff
(96.8 %id)
BP220687 colon .b 288 to 834 8 to 554       547/547
(100 %)
2 diff
(99.7 %id)
CB269796 adipose .b 300 to 998 1 to 696       696/699
(99 %)
4 diff
(99.5 %id)
AF124489 Liver .b 375 to 1496 1 to 1122   tiling clone,   1122/1122
(100 %)
0 diff
(100 %id)
BE163157 head_neck .b 390 to 575 1 to 185       185/185
(100 %)
4 diff
(97.9 %id)
AK316125 tongue, tumor tissue .b 462 to 1856 1 to 1395       1395/1395
(100 %)
1 diff
(100.0 %id)
DC345404 tongue, tumor tissue .b 462 to 975 1 to 514       514/514
(100 %)
0 diff
(100 %id)
FN128835 breast carcinoma .b 467 to 523 57 to 1     Submitted on the opposite strand 57/65
(87 %)
0 diff
(100 %id)
BP241249 Liver .b 472 to 1047 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DA834938 placenta .b 690 to 1238 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
FN121233 breast carcinoma .b 809 to 871 62 to 1     Submitted on the opposite strand 62/64
(96 %)
1 diff
(98.5 %id)
BE540212 cervix .b 856 to 1518 1 to 671       665/740
(89 %)
18 diff
(97.6 %id)
DA345473 substantia nigra .b 921 to 1481 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
CD643329 Embryonic Stem cells .b 930 to 1588 1 to 659       659/814
(80 %)
1 diff
(99.9 %id)
BF224424 Kidney .b 945 to 1507 563 to 1       563/563
(100 %)
0 diff
(100 %id)
DA025888   .b 997 to 1557 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BP379373 uterus .b 1013 to 1572 1 to 560       560/560
(100 %)
3 diff
(99.5 %id)
CD238689 Pituitary .b 1075 to 1811 1 to 741       741/742
(99 %)
19 diff
(97.5 %id)
CD239738 Pituitary .b 1075 to 1792 1 to 718       718/718
(100 %)
5 diff
(99.4 %id)
AA164213   .b 1094 to 1477 1 to 384       384/386
(99 %)
1 diff
(99.8 %id)
CN305401 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1105 to 1790 1 to 687       687/687
(100 %)
1 diff
(99.9 %id)
D31347   .b 1114 to 1350 1 to 238       238/250
(95 %)
7 diff
(97.2 %id)
BU600239 mixed (pool of 40 RNAs) .b 1116 to 1821 1 to 707       707/759
(93 %)
8 diff
(99.0 %id)
BP207522 coronary artery .b 1173 to 1752 1 to 582       582/582
(100 %)
10 diff
(98.3 %id)
BP291204 lung .b 1175 to 1647 1 to 475       475/573
(82 %)
18 diff
(96.9 %id)
AU124900   .b 1176 to 1950 2 to 778   capped   777/846
(91 %)
5 diff
(99.5 %id)
BM759516 Ascites, stomach .b 1177 to 1832 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
DB173236 kidney, tumor tissue .b 1177 to 1751 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
TI_1241111581   .b 1191 to 1527 14 to 350       337/1245
(27 %)
7 diff
(99.5 %id)
DB202013 trachea .b 1220 to 1796 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
AL601199   .b 1240 to 1514 1 to 276       276/276
(100 %)
1 diff
(99.7 %id)
AA376853 small intestine .b 1290 to 1518 1 to 229       229/229
(100 %)
0 diff
(100 %id)
AW951411   .b 1291 to 1841 1 to 551       551/552
(99 %)
1 diff
(99.9 %id)
DA827656 pericardium .b 1291 to 1833 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
AW571506 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1296 to 1871 576 to 1       576/576
(100 %)
4 diff
(99.4 %id)
BM836677 Ascites, stomach .b 1344 to 1916 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BF513895   .b 1349 to 1512 181 to 18   AAA   164/172
(95 %)
2 diff
(98.9 %id)
DA549716   .b 1352 to 1916 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CR602975 Neuroblastoma Cot 50-normalized .b 1415 to 3169 1 to 1755   tiling clone,   1755/1755
(100 %)
0 diff
(100 %id)
AL530061 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 1415 to 2236 1 to 828       828/828
(100 %)
15 diff
(98.2 %id)
DB262291 uterus .b 1423 to 2002 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
Z32866   .b 1443 to 1759 1 to 319       319/319
(100 %)
2 diff
(99.4 %id)
DN920378   .b 1503 to 1759 1 to 257       257/257
(100 %)
1 diff
(99.7 %id)
AW062375 colon .b 1579 to 2057 492 to 15       478/498
(95 %)
0 diff
(100 %id)
AW062376 colon .b 1579 to 2057 483 to 4       480/489
(98 %)
0 diff
(100 %id)
BM742550 Ascites, stomach .b 1652 to 2164 1 to 509       509/514
(99 %)
7 diff
(98.7 %id)
BG109310 Bone, osteosarcoma, cell line .b 1705 to 2427 1 to 708       708/740
(95 %)
24 diff
(96.8 %id)
BG288879 bladder, transitional cell papilloma, cell line .b 1706 to 2442 1 to 730       730/957
(76 %)
19 diff
(98.1 %id)
BF541220 hypernephroma, Kidney .b 1751 to 2435 1 to 673       673/677
(99 %)
31 diff
(95.5 %id)
CB216446 normal endometrium, mid-secretory phase,cycle day 23, uterus .b 1752 to 2396 1 to 645       645/645
(100 %)
0 diff
(100 %id)
AA345835 gall bladder .b 1813 to 2074 1 to 263       263/263
(100 %)
1 diff
(99.7 %id)
AW964295   .b 1821 to 2409 1 to 591       591/592
(99 %)
9 diff
(98.5 %id)
BX952414   .b 1834 to 2457 1 to 623       623/623
(100 %)
2 diff
(99.7 %id)
FN172137 breast carcinoma .b 1868 to 1961 1 to 94       94/97
(96 %)
1 diff
(99.0 %id)
BE568866 bladder, carcinoma, cell line .b 1900 to 2577 1 to 665       665/745
(89 %)
33 diff
(95.6 %id)
DT217638 brain .b 1906 to 2614 1 to 709       709/709
(100 %)
1 diff
(99.9 %id)
BF216592 brain, glioblastoma .b 1920 to 2510 1 to 591       591/870
(67 %)
27 diff
(96.9 %id)
BX493909   .b 1926 to 2457 1 to 534       534/535
(99 %)
5 diff
(99.1 %id)
BX389461 Neuroblastoma Cot 50-normalized .b 2053 to 2834 1 to 787       787/910
(86 %)
33 diff
(96.4 %id)
BM827010 Ascites, stomach .b 2083 to 2531 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
BM769127 stomach .b 2088 to 2542 1 to 455       455/455
(100 %)
0 diff
(100 %id)
BM695500 eye, optic nerve .b 2099 to 2620 1 to 523   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 523/523
(100 %)
2 diff
(99.7 %id)
BM856182 stomach .b 2150 to 2517 1 to 368       368/368
(100 %)
0 diff
(100 %id)
BF110924 carcinoid, lung .b 2192 to 2731 8 to 548     Submitted on the opposite strand 541/548
(98 %)
8 diff
(98.6 %id)
H39972 breast .b 2203 to 2544 1 to 343       343/343
(100 %)
3 diff
(99.2 %id)
AA996271 carcinoid, lung .b 2209 to 2505 1 to 297     Submitted on the opposite strand 297/297
(100 %)
0 diff
(100 %id)
AI912088 carcinoid, lung .b 2209 to 2728 1 to 519     Submitted on the opposite strand 519/519
(100 %)
2 diff
(99.7 %id)
BM725303 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2214 to 2568 1 to 355   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 355/355
(100 %)
0 diff
(100 %id)
TI_149308939   .b 2231 to 3183 1043 to 103   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 941/1009
(93 %)
34 diff
(96.7 %id)
AA215329 germinal center B cell .b 2235 to 2656 1 to 428       428/430
(99 %)
8 diff
(98.2 %id)
BG117253 adenocarcinoma, cell line, Liver .b 2258 to 2994 1 to 731       731/974
(75 %)
24 diff
(97.6 %id)
AL530060 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 2272 to 3140 906 to 32       875/906
(96 %)
0 diff
(100 %id)
BQ189423 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2290 to 2725 1 to 436   fully sequenced, Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 436/436
(100 %)
0 diff
(100 %id)
FN124979 breast carcinoma .b 2356 to 2411 56 to 1     Submitted on the opposite strand 56/60
(93 %)
0 diff
(100 %id)
TI_149280042   .b 2371 to 3186 889 to 83   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 807/811
(99 %)
23 diff
(97.2 %id)
BF698091 brain, primitive neuroectoderm .b 2380 to 2990 1 to 607       607/608
(99 %)
9 diff
(98.6 %id)
BX094028 placenta .b 2389 to 3120 1 to 731       731/731
(100 %)
2 diff
(99.8 %id)
R27399 placenta .b 2389 to 2690 1 to 305       305/408
(74 %)
8 diff
(98.1 %id)
TI_149302241   .b 2393 to 3183 859 to 79   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 781/949
(82 %)
19 diff
(98.0 %id)
BI256851 cervical carcinoma cell line, cervix .b 2396 to 3189 1 to 804       804/820
(98 %)
11 diff
(98.7 %id)
BF217671 brain, glioblastoma .b 2402 to 2963 1 to 559       559/559
(100 %)
12 diff
(97.9 %id)
R31509 placenta .b 2423 to 2680 1 to 260       260/265
(98 %)
3 diff
(98.9 %id)
R62840 placenta .b 2424 to 2803 1 to 397       397/458
(86 %)
22 diff
(95.2 %id)
TI_151731711   .b 2431 to 3186 835 to 85   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 751/915
(82 %)
26 diff
(97.2 %id)
BE622743 melanotic melanoma, skin .b 2437 to 3135 767 to 32       736/1086
(67 %)
0 diff
(100 %id)
AA046346 uterus .b 2457 to 2849 1 to 398   fully sequenced,   398/398
(100 %)
6 diff
(98.5 %id)
BU687382 lung .b 2457 to 3183 747 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 729/729
(100 %)
8 diff
(99.0 %id)
BM980473 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2471 to 3183 732 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 714/714
(100 %)
3 diff
(99.6 %id)
ES308204 beard hair, skin .b 2477 to 2707 1 to 231       231/231
(100 %)
0 diff
(100 %id)
AW965194   .b 2501 to 3185 685 to 1     Submitted on the opposite strand 685/707
(96 %)
5 diff
(99.3 %id)
AA345528 gall bladder .b 2502 to 2794 1 to 293       293/293
(100 %)
0 diff
(100 %id)
AA465601 germinal center B cell .b 2527 to 2936 1 to 409       409/409
(100 %)
2 diff
(99.6 %id)
AA503708 colon .b 2547 to 2684 1 to 138     Submitted on the opposite strand 138/138
(100 %)
0 diff
(100 %id)
BU678995 lung, Primary Lung Epithelial Cells .b 2564 to 3186 636 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 618/618
(100 %)
4 diff
(99.4 %id)
AW841382 colon_normal .b 2578 to 2698 1 to 121       121/121
(100 %)
1 diff
(99.2 %id)
AW841428 colon_normal .b 2578 to 2698 1 to 121       121/121
(100 %)
2 diff
(98.4 %id)
BU728915 eye, optic nerve .b 2590 to 3186 610 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 592/592
(100 %)
4 diff
(99.4 %id)
FN141621 breast carcinoma .b 2594 to 2713 121 to 1     Submitted on the opposite strand 121/122
(99 %)
1 diff
(99.2 %id)
CA427492 Cell Line, Chondrosarcoma .b 2598 to 3186 609 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 591/591
(100 %)
2 diff
(99.7 %id)
BQ777234 Pancreas, Purified pancreatic islet .b 2602 to 3158 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
AA062859 pineal gland .b 2618 to 3016 20 to 427       408/427
(95 %)
6 diff
(98.6 %id)
AU148677   .b 2624 to 3186 558 to 1       558/560
(99 %)
10 diff
(98.3 %id)
DB309351.
matches multiple genes
hippocampus .b 2628 to 3186 560 to 1     also hits gene toriyu 560/560
(100 %)
1 diff
(99.9 %id)
CK902310 Pancreas, Purified pancreatic islet .b 2635 to 3186 1 to 552   AAA Submitted on the opposite strand 552/552
(100 %)
2 diff
(99.7 %id)
BX334145 Neuroblastoma Cot 50-normalized .b 2636 to 3189 1 to 554       554/554
(100 %)
3 diff
(99.5 %id)
AI971054.
matches multiple genes
cochlea, ear, Prostate .b 2636 to 3186 551 to 1     also hits gene bleeplerby 551/551
(100 %)
1 diff
(99.9 %id)
AI636199 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2640 to 3187 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
BE966728 melanotic melanoma, skin .b 2648 to 3186 570 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 552/552
(100 %)
25 diff
(95.5 %id)
AV717212   .b 2663 to 3183 1 to 521       521/538
(96 %)
2 diff
(99.7 %id)
DB523473 testis .b 2673 to 3183 1 to 511     Submitted on the opposite strand 511/511
(100 %)
0 diff
(100 %id)
AW131141 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 2673 to 3186 514 to 1       514/514
(100 %)
0 diff
(100 %id)
BU580512 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .b 2675 to 3185 511 to 1       511/511
(100 %)
2 diff
(99.7 %id)
AA536112 invasive prostate tumor, Prostate .b 2686 to 3138 1 to 448       448/473
(94 %)
18 diff
(96.2 %id)
BF221701 Prostate .b 2687 to 3186 500 to 1       500/500
(100 %)
0 diff
(100 %id)
CK299557 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2695 to 3186 507 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 489/489
(100 %)
3 diff
(99.4 %id)
BE350335 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 2700 to 3186 497 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 487/487
(100 %)
0 diff
(100 %id)
AI743926 pooled .b 2706 to 3189 487 to 4       484/487
(99 %)
0 diff
(100 %id)
BE219274 carcinoid, lung .b 2711 to 3188 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
AI753308 bone marrow stroma .b 2712 to 3186 493 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 475/475
(100 %)
0 diff
(100 %id)
AI683007 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2712 to 3179 473 to 6       468/473
(98 %)
0 diff
(100 %id)
AI498016 anaplastic oligodendroglioma, brain .b 2713 to 3183 484 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 471/471
(100 %)
0 diff
(100 %id)
AV722782 hypothalamus .b 2717 to 3189 470 to 5     Submitted on the opposite strand 466/712
(65 %)
0 diff
(100 %id)
BE544711 cervical carcinoma cell line, cervix .b 2717 to 3177 1 to 452       452/454
(99 %)
10 diff
(97.8 %id)
BM955966 tonsil .b 2718 to 2895 1 to 178       178/178
(100 %)
0 diff
(100 %id)
AI377577   .b 2723 to 3189 467 to 3       465/467
(99 %)
0 diff
(100 %id)
BE042588 colon, moderately-differentiated adenocarcinoma .b 2724 to 3189 466 to 1   tiling clone,   466/466
(100 %)
0 diff
(100 %id)
BU690038 Human Lung Epithelial cells, lung .b 2731 to 3186 475 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 457/469
(97 %)
6 diff
(98.8 %id)
AI360802 brain, glioblastoma (pooled) .b 2732 to 3186 455 to 1       455/455
(100 %)
0 diff
(100 %id)
BU675721 lung, Primary Lung Epithelial Cells .b 2739 to 3166 4 to 432     Submitted on the opposite strand 429/619
(69 %)
3 diff
(99.6 %id)
DB537085 hippocampus .b 2743 to 3185 1 to 444     Submitted on the opposite strand 444/444
(100 %)
2 diff
(99.6 %id)
CB139864 Liver .b 2743 to 3176 1 to 434       434/434
(100 %)
0 diff
(100 %id)
AI144460 heart .b 2745 to 3189 450 to 6       445/450
(98 %)
0 diff
(100 %id)
AI015024   .b 2746 to 3189 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AI097610 brain, glioblastoma (pooled) .b 2746 to 3188 443 to 1       443/443
(100 %)
0 diff
(100 %id)
FN053339 breast carcinoma .b 2748 to 2858 1 to 113       113/113
(100 %)
3 diff
(97.4 %id)
AV681617 hepatocellular carcinoma .b 2748 to 3186 1 to 438   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 438/438
(100 %)
3 diff
(99.4 %id)
AI184892 pooled .b 2751 to 3147 1 to 397     Submitted on the opposite strand 397/397
(100 %)
0 diff
(100 %id)
DB516104 testis .b 2752 to 3183 1 to 431     Submitted on the opposite strand 431/431
(100 %)
1 diff
(99.8 %id)
DB535258 hippocampus .b 2756 to 3185 1 to 430     Submitted on the opposite strand 430/431
(99 %)
4 diff
(99.1 %id)
DB509353 testis .b 2766 to 3186 1 to 421     Submitted on the opposite strand 421/421
(100 %)
0 diff
(100 %id)
AI653822 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2773 to 3186 433 to 20   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 414/414
(100 %)
0 diff
(100 %id)
AI694945 carcinoid, lung .b 2774 to 3186 438 to 26   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 413/413
(100 %)
4 diff
(99.1 %id)
AA164214   .b 2783 to 3189 409 to 2       408/411
(99 %)
0 diff
(100 %id)
AA210769 germinal center B cell .b 2817 to 3189 377 to 2     Submitted on the opposite strand 376/455
(82 %)
0 diff
(100 %id)
AA678866   .b 2829 to 3118 290 to 1       290/290
(100 %)
0 diff
(100 %id)
R25328 placenta .b 2835 to 3180 1 to 346       346/353
(98 %)
1 diff
(99.8 %id)
AI452652 pooled .b 2836 to 3183 361 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 348/348
(100 %)
0 diff
(100 %id)
AA214305 germinal center B cell .b 2837 to 3186 352 to 1       352/352
(100 %)
2 diff
(99.5 %id)
AA046267 uterus .b 2839 to 3186 351 to 1   fully sequenced,   351/351
(100 %)
3 diff
(99.2 %id)
AA838781 parathyroid gland, parathyroid tumor .b 2850 to 3183 347 to 14   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 334/334
(100 %)
0 diff
(100 %id)
AA886668 Kidney .b 2857 to 3186 330 to 1       330/330
(100 %)
0 diff
(100 %id)
AW149149 Kidney, renal cell tumor .b 2867 to 3184 319 to 2       318/319
(99 %)
0 diff
(100 %id)
FN062686 breast carcinoma .b 2868 to 2929 1 to 61       61/63
(96 %)
2 diff
(96.9 %id)
T52363 fetal spleen, Spleen .b 2881 to 3185 309 to 1       309/311
(99 %)
8 diff
(97.5 %id)
R62795 placenta .b 2881 to 3185 306 to 1       306/306
(100 %)
2 diff
(99.4 %id)
H28478.
matches multiple genes
breast .b 2881 to 3186 310 to 1     also hits gene HARS2andZMAT2 310/312
(99 %)
5 diff
(98.4 %id)
R27400 placenta .b 2884 to 3186 303 to 1       303/303
(100 %)
0 diff
(100 %id)
AA730032 germinal center B cell .b 2888 to 3186 309 to 11   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 299/299
(100 %)
1 diff
(99.7 %id)
AI205939   .b 2909 to 3184 278 to 3       276/278
(99 %)
0 diff
(100 %id)
AA971915 pooled .b 2943 to 3189 247 to 1       247/247
(100 %)
0 diff
(100 %id)
AW582765   .b 2995 to 3152 160 to 1       160/161
(99 %)
2 diff
(98.8 %id)
DN920379   .b 3004 to 3186 185 to 3       183/185
(98 %)
0 diff
(100 %id)
AI634366 Kidney, renal cell tumor .b 3011 to 3186 192 to 17   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 176/176
(100 %)
0 diff
(100 %id)
N75629 cochlea, ear .b 3012 to 3189 1 to 178   fully sequenced,   178/178
(100 %)
6 diff
(96.7 %id)
AW817622 stomach .b 3016 to 3163 1 to 148       148/148
(100 %)
5 diff
(96.7 %id)
AA845450 parathyroid gland, parathyroid tumor .b 3019 to 3189 174 to 4       171/174
(98 %)
0 diff
(100 %id)
N22390 cochlea, ear .b 3053 to 3186 134 to 1   fully sequenced,   134/134
(100 %)
0 diff
(100 %id)
AI869457 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 3075 to 3183 109 to 1       109/109
(100 %)
0 diff
(100 %id)
EC520418 Prostate .b 3096 to 3188 1 to 93       93/93
(100 %)
1 diff
(99.0 %id)
FN159835 breast carcinoma .b 3113 to 3183 1 to 71       71/73
(97 %)
1 diff
(98.7 %id)
AK304141 trachea .c 1 to 1327 4 to 1330 exact tiling clone,   1330/1330
(100 %)
0 diff
(100 %id)
DC416407 trachea .c 1 to 566 4 to 569       569/569
(100 %)
0 diff
(100 %id)
DC319456 brain .c 21 to 579 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
DC345256 colon .c 21 to 569 1 to 549       549/549
(100 %)
0 diff
(100 %id)
BP240626 Liver .c 21 to 600 1 to 580       580/580
(100 %)
3 diff
(99.5 %id)
DC408527 thymus .c 21 to 546 1 to 527       527/527
(100 %)
1 diff
(99.9 %id)
DC414993 trachea .c 21 to 584 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC415233 trachea .c 21 to 559 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
DC299730   .c 27 to 586 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC421609 uterus .c 27 to 585 1 to 559       559/559
(100 %)
0 diff
(100 %id)
BC103759 Uterus, leiomyosarcoma .c 34 to 1728 1 to 1695   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 1695/1695
(100 %)
0 diff
(100 %id)
BQ428470 leiomyosarcoma, uterus .c 35 to 896 1 to 865       865/865
(100 %)
8 diff
(99.1 %id)
DC346853 tongue, tumor tissue .c 36 to 601 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
DC383951 Prostate .c 36 to 601 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC409220 thymus .c 36 to 458 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
CB991823 placenta, pre-eclamptic placenta .c 42 to 827 27 to 821       795/825
(96 %)
17 diff
(98.0 %id)
BP270466 small intestine .c 43 to 417 1 to 377       377/583
(64 %)
7 diff
(98.8 %id)
DC383854 Prostate .c 43 to 616 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
DC401988 testis .c 43 to 616 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BC143676 Brain, cerebral cortex, PCR rescued clones .c 46 to 1314 1 to 1269       1269/1269
(100 %)
0 diff
(100 %id)
DC346116 tongue, tumor tissue .c 46 to 630 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
DC356013   .c 52 to 613 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC403926 testis .c 53 to 638 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DR004687 placenta .c 54 to 718 7 to 671       665/671
(99 %)
6 diff
(99.2 %id)
CN305398 embryonic stem cells, cell lines H1, H7, andH9 .c 78 to 706 1 to 630       630/630
(100 %)
2 diff
(99.7 %id)
AK092402 placenta .d 1 to 1423 2 to 1424 E411S tiling clone, available from FLJ,   1424/1939
(73 %)
4 diff
(99.8 %id)
AX747524   .d 1 to 1423 2 to 1424 E411S     1424/1939
(73 %)
4 diff
(99.8 %id)
DA839012.
matches multiple genes
placenta .d 1 to 566 2 to 567   capped also hits gene C2orf72 566/566
(100 %)
0 diff
(100 %id)
DB031307 testis .e 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DB337046 testis .e 1307 to 1729 494 to 71   tiling clone,   424/494
(85 %)
1 diff
(99.8 %id)
DC296199 synovial membrane tissue from rheumatioidarthritis .f 1 to 548 1 to 548   tiling clone,   548/548
(100 %)
2 diff
(99.7 %id)
DC388385 small intestine .f 13 to 586 1 to 574       574/574
(100 %)
0 diff
(100 %id)
DC355443   .f 16 to 595 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
AU139844 placenta .f 239 to 1010 2 to 777   tiling clone, capped   776/776
(100 %)
8 diff
(99.0 %id)
AU158197 placenta .f 2661 to 3205 543 to 1   tiling clone,   543/543
(100 %)
10 diff
(98.2 %id)
DA309081 hippocampus .g 1 to 582 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
DA940015 Spleen .g 1 to 577 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA496482 brain .g 4 to 572 2 to 572   capped   571/572
(99 %)
4 diff
(99.4 %id)
DB469507 hippocampus .g 5 to 446 1 to 442       442/442
(100 %)
1 diff
(99.8 %id)
DA172231 amygdala .g 13 to 562 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
NM_001025593.1   .g 18 to 3012 1 to 2995 exact RefSeq,   2995/2995
(100 %)
0 diff
(100 %id)
DC376048 brain .g 18 to 553 1 to 539       539/539
(100 %)
5 diff
(99.1 %id)
DA653217   .g 19 to 602 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB092239 testis .g 19 to 563 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DB152056 thymus .g 19 to 616 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
AU131570   .g 22 to 877 2 to 855   capped   854/859
(99 %)
9 diff
(99.0 %id)
DA671916   .g 25 to 625 2 to 602   capped   601/601
(100 %)
1 diff
(99.9 %id)
DA126368 cerebellum .g 26 to 608 2 to 585   capped   584/588
(99 %)
3 diff
(99.5 %id)
TI_1241112273   .g 35 to 790 771 to 16       756/1275
(59 %)
4 diff
(99.7 %id)
DA818245   .g 40 to 601 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA779833 brain .g 41 to 622 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
TI_1241112265   .g 42 to 1101 1070 to 12       1059/1243
(85 %)
2 diff
(99.9 %id)
BC105114 Brain, cerebral cortex, PCR rescued clones .g 43 to 1350 1 to 1308 exact tiling clone,   1308/1308
(100 %)
0 diff
(100 %id)
BC105116 Brain, cerebral cortex, PCR rescued clones .g 43 to 1344 1 to 1302 exact     1302/1302
(100 %)
0 diff
(100 %id)
BC143675 Brain, cerebral cortex, PCR rescued clones .g 43 to 1350 1 to 1308 exact     1308/1308
(100 %)
0 diff
(100 %id)
DA750218   .g 46 to 605 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
CN305403 embryonic stem cells, cell lines H1, H7, andH9 .g 47 to 776 1 to 730       730/730
(100 %)
2 diff
(99.8 %id)
TI_154148779   .g 77 to 576 86 to 585       500/500
(100 %)
0 diff
(100 %id)
DA480127   .g 123 to 681 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB457593 testis .g 149 to 624 1 to 477       477/477
(100 %)
3 diff
(99.4 %id)
DA649596   .g 168 to 711 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB133498 thymus .g 169 to 688 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
DB210446 trachea .g 174 to 657 2 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
DA068606 cerebellum .g 202 to 764 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA666970   .g 202 to 766 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BF507539   .g 212 to 718 511 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 507/511
(99 %)
1 diff
(99.9 %id)
TI_1241110729   .g 228 to 1350 1184 to 61 N8V A10S A11R E12N I13C ...     1124/1241
(90 %)
20 diff
(98.4 %id)
AL044650 testis .g 235 to 1003 1 to 767       767/767
(100 %)
2 diff
(99.8 %id)
BY996929   .g 415 to 967 10 to 562       553/562
(98 %)
6 diff
(99.0 %id)
AL044651 testis .g 2193 to 3002 810 to 1   tiling clone,   810/810
(100 %)
0 diff
(100 %id)
AU153289   .g 2480 to 3009 526 to 1   tiling clone,   526/530
(99 %)
12 diff
(97.8 %id)
DA161696 amygdala .h 1 to 567 11 to 577   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
AU099007   .h 15 to 314 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
NM_014447.2   .h 15 to 2874 1 to 2860 exact RefSeq,   2860/2860
(100 %)
0 diff
(100 %id)
DA521307 brain .h 16 to 594 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA659457   .h 16 to 583 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA780243 brain .h 16 to 528 2 to 514   capped   513/513
(100 %)
1 diff
(99.9 %id)
DB081692 testis .h 16 to 581 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB140242 thymus .h 16 to 572 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AK290472 brain .h 21 to 1626 1 to 1606 exact tiling clone,   1606/1606
(100 %)
2 diff
(99.9 %id)
DA476684   .h 22 to 586 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA494607 brain .h 22 to 597 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA511931 brain .h 22 to 587 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AU129957   .h 25 to 324 2 to 302   capped   301/309
(97 %)
2 diff
(99.4 %id)
U52521   .h 26 to 1258 1 to 1233 exact     1233/1234
(99 %)
1 diff
(100.0 %id)
CX754503 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 27 to 696 1 to 658       658/827
(79 %)
25 diff
(97.0 %id)
Z44751 brain, total brain .h 35 to 363 13 to 342       330/342
(96 %)
12 diff
(96.5 %id)
DB083558 testis .h 38 to 599 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
CN305400 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 39 to 783 1 to 746       746/746
(100 %)
4 diff
(99.5 %id)
DA679458   .h 40 to 613 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
CX754399 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 41 to 783 1 to 737     Submitted on the opposite strand 737/740
(99 %)
9 diff
(98.8 %id)
CD698599 normal nasopharynx .h 42 to 294 16 to 268       253/268
(94 %)
6 diff
(97.8 %id)
DA138418 alzheimer cortex .h 44 to 616 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CN305399 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 47 to 329 129 to 411       283/411
(68 %)
6 diff
(98.6 %id)
CV569724 cornea, eye .h 48 to 658 1 to 611       611/611
(100 %)
0 diff
(100 %id)
CN305402 embryonic stem cells, cell lines H1, H7, andH9 .h 61 to 716 1 to 657       657/657
(100 %)
2 diff
(99.7 %id)
DN995062 brain, whole brain .h 76 to 782 1 to 707       707/707
(100 %)
5 diff
(99.3 %id)
Z40570 brain, total brain .h 1448 to 1630 183 to 1   tiling clone,   183/183
(100 %)
1 diff
(99.5 %id)
AU152015   .h 2345 to 2871 530 to 1   tiling clone,   530/539
(98 %)
4 diff
(99.3 %id)
BG707652 brain, hypothalamus .i 1 to 733 6 to 739 L2F E210A K211I L212V E213R ... tiling clone,   734/740
(99 %)
9 diff
(98.8 %id)
DA452239 tongue, tumor tissue .j -8 to 581 2 to 591   tiling clone, capped   590/590
(100 %)
2 diff
(99.7 %id)
DA485551 brain .j 1 to 550 2 to 551   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
CA388773 eye, RPE/choroid .j 465 to 986 12 to 533   tiling clone,   522/533
(97 %)
6 diff
(98.9 %id)
DC363655   .k 1 to 586 1 to 586 L4F tiling clone,   586/586
(100 %)
1 diff
(99.9 %id)
AK299600 brain .l 1 to 1598 2 to 1599 exact tiling clone,   1599/1599
(100 %)
1 diff
(100.0 %id)
DA780555 brain .l 1 to 568 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA671074   .m 1 to 592 2 to 593 exact tiling clone, capped   592/592
(100 %)
0 diff
(100 %id)
TI_57177681   .n 1 to 689 37 to 727 A16C V17G G18W Q19S C20V ... tiling clone,   691/727
(95 %)
14 diff
(98.1 %id)
BI766372 pooled lung and spleen .n 2 to 689 1 to 690 A16C V17G G18W Q19S C20V ... tiling clone,   690/690
(100 %)
11 diff
(98.5 %id)
DA681773 ovary .o 1 to 561 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DA675740   .p 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
DA832495 placenta .q 1 to 545 2 to 546   tiling clone, capped   545/556
(98 %)
2 diff
(99.7 %id)
AW291524   .q 427 to 836 430 to 22   tiling clone,   409/430
(95 %)
1 diff
(99.8 %id)
DB378721 placenta .q 1310 to 1820 521 to 1   tiling clone,   521/521
(100 %)
34 diff
(93.5 %id)
AW275028 pooled germ cell tumors .r 1 to 530 531 to 0 exact tiling clone,   531/531
(100 %)
0 diff
(100 %id)
DC428683   .s 1 to 594 2 to 595 exact tiling clone,   597/597
(100 %)
1 diff
(99.9 %id)
DA116621 cerebellum .t 1 to 589 8 to 597 exact tiling clone, capped   596/596
(100 %)
2 diff
(99.7 %id)
DA243388 brain .u 1 to 586 2 to 587 V45I tiling clone, capped   586/586
(100 %)
2 diff
(99.7 %id)
AA092414   .u 157 to 367 1 to 209       209/209
(100 %)
8 diff
(96.2 %id)
CD559419 pooled .va 1 to 513 4 to 516 exact tiling clone,   516/517
(99 %)
4 diff
(99.3 %id)
DB139190 thymus .vb 1 to 485 2 to 489 A2L tiling clone, capped   488/488
(100 %)
5 diff
(99.0 %id)
AI683713 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .vc-u 1 to 424 430 to 7 R15P tiling clone,   424/445
(95 %)
0 diff
(100 %id)
BG014643 placenta_normal .vd 1 to 382 381 to 1 T16Q D17I I18L T19Q V20F ... tiling clone,   381/385
(98 %)
9 diff
(97.7 %id)
CV386939 placenta_normal .ve-u 1 to 233 34 to 264   tiling clone,   231/264
(87 %)
6 diff
(97.8 %id)
AK096509 brain Gene ARFIP1andFHDC1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
TI_1241110717   Gene ARFIP1andFHDC1, variant not shown         This clone was ignored    
DA436170 tongue, tumor tissue Gene ARFIP1andFHDC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA444165 tongue, tumor tissue Gene ARFIP1andFHDC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB325764 brain Gene ARFIP1andFHDC1, variant not shown         Suspected internal deletion, this clone was ignored    
DA771601 brain Gene ARFIP1andFHDC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA786546 brain Gene ARFIP1andFHDC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB103397 thymus Gene ARFIP1andFHDC1, variant not shown       capped This clone was ignored    
DB342644 thymus Gene ARFIP1andFHDC1, variant not shown         This clone was ignored    
DB214486 trachea Gene ARFIP1andFHDC1, variant not shown       capped This clone was ignored    
DB348971 trachea Gene ARFIP1andFHDC1, variant not shown         This clone was ignored    
DB267274 uterus Gene ARFIP1andFHDC1, variant not shown       capped This clone was ignored    
DB351856 uterus Gene ARFIP1andFHDC1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc-u, .vd, .ve-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI