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Gene ZC3H12CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene ZC3H12C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK299100   .a 1 to 2933 1 to 2933 exact tiling clone,   2933/2933
(100 %)
2 diff
(100.0 %id)
DC369930   .a 1 to 560 1 to 561       561/561
(100 %)
3 diff
(99.5 %id)
AK295437 corpus callosum .b 1 to 3339 1 to 3339 D86G P591A tiling clone,   3339/3339
(100 %)
7 diff
(99.8 %id)
DC329559 corpus callosum .b 1 to 570 1 to 571       571/571
(100 %)
7 diff
(98.8 %id)
NM_033390.1   .b 2 to 8808 1 to 8807 exact RefSeq,   8807/8807
(100 %)
0 diff
(100 %id)
DB449868 testis .b 35 to 748 1 to 714   tiling clone,   714/714
(100 %)
8 diff
(98.9 %id)
AI400987 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 380 to 830 451 to 1       451/451
(100 %)
0 diff
(100 %id)
AI079998 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 387 to 830 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AI452795 pooled .b 553 to 965 421 to 9       413/421
(98 %)
1 diff
(99.8 %id)
CU445491 epidermis .b 763 to 1608 848 to 1     Submitted on the opposite strand 848/848
(100 %)
9 diff
(99.0 %id)
AB051513   .b 829 to 8806 1 to 7981   tiling clone, available from KIAA,   7981/7981
(100 %)
3 diff
(100.0 %id)
AL832893 lymph node .b 1149 to 7565 1 to 6417   tiling clone, available from DKFZ,   6417/6425
(99 %)
1 diff
(100.0 %id)
CX760717 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1782 to 2505 1 to 723     Submitted on the opposite strand 723/724
(99 %)
2 diff
(99.8 %id)
AI903744 breast .b 2003 to 2342 1 to 340       340/343
(99 %)
4 diff
(98.9 %id)
BG010939 placenta_normal .b 2380 to 2521 1 to 142       142/142
(100 %)
1 diff
(99.3 %id)
AA136356 uterus .b 2464 to 2903 1 to 442       442/443
(99 %)
3 diff
(99.4 %id)
AA131653 uterus .b 2464 to 2706 1 to 245       245/245
(100 %)
6 diff
(97.6 %id)
DB515166 testis .b 2632 to 3342 1 to 711     Submitted on the opposite strand 711/711
(100 %)
1 diff
(99.9 %id)
AI142861 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2807 to 3336 528 to 1       528/528
(100 %)
2 diff
(99.7 %id)
BX497964 Liver .b 2837 to 3339 1 to 508       508/508
(100 %)
8 diff
(98.5 %id)
AA136268 uterus .b 2938 to 3336 407 to 1       407/408
(99 %)
10 diff
(97.6 %id)
AI473385 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2942 to 3336 395 to 1       395/395
(100 %)
0 diff
(100 %id)
FN158231 breast carcinoma .b 2981 to 3085 105 to 1     Submitted on the opposite strand 105/105
(100 %)
2 diff
(98.1 %id)
N42754 melanocyte .b 3057 to 3420 1 to 367       367/367
(100 %)
9 diff
(97.6 %id)
AA131471 uterus .b 3107 to 3336 230 to 1       230/232
(99 %)
1 diff
(99.6 %id)
BX956872   .b 3142 to 3858 1 to 716       716/722
(99 %)
7 diff
(99.1 %id)
BF575039 muscle (skeletal) .b 3321 to 3933 1 to 608       608/802
(75 %)
36 diff
(95.6 %id)
BX505366   .b 4167 to 4647 1 to 481       481/481
(100 %)
1 diff
(99.8 %id)
EH315507   .b 4199 to 4258 8 to 67       60/67
(89 %)
6 diff
(91.1 %id)
BG654530 Pancreas, Purified pancreatic islet .b 4677 to 5097 1 to 420       420/420
(100 %)
7 diff
(98.4 %id)
AL706019 human skeletal muscle .b 4961 to 5644 1 to 684       684/684
(100 %)
1 diff
(99.9 %id)
CD723560 eye, lacrimal gland .b 5093 to 5684 1 to 592       592/592
(100 %)
0 diff
(100 %id)
AA220216   .b 5487 to 5762 1 to 279       279/279
(100 %)
18 diff
(93.6 %id)
BX503186 Liver .b 5677 to 6226 1 to 550       550/550
(100 %)
0 diff
(100 %id)
BG248998 hypernephroma, cell line, Kidney .b 5691 to 6106 1 to 415       415/967
(42 %)
8 diff
(99.2 %id)
BG654599 Pancreas, Purified pancreatic islet .b 5760 to 6259 501 to 1     Submitted on the opposite strand 501/501
(100 %)
3 diff
(99.5 %id)
BY799440 eye .b 5867 to 6269 81 to 483       403/483
(83 %)
11 diff
(97.8 %id)
BI255268 cervical carcinoma cell line, cervix .b 6225 to 6997 1 to 794       794/803
(98 %)
6 diff
(99.3 %id)
DA745086   .b 6241 to 6750 2 to 507   capped   506/506
(100 %)
3 diff
(99.5 %id)
DB270644 uterus .b 6426 to 6984 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA607602   .b 6603 to 7160 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA303971 hippocampus .b 6614 to 7167 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
CR744206 uterus .b 6621 to 7311 1 to 690       690/690
(100 %)
2 diff
(99.8 %id)
BG534565 lung .b 6638 to 7368 1 to 725       725/725
(100 %)
11 diff
(98.5 %id)
DB199584 trachea .b 6786 to 7359 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA625484 Kidney .b 6813 to 7349 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
AL118839 amygdala .b 6879 to 7131 1 to 255       255/255
(100 %)
2 diff
(99.3 %id)
DB320608 Kidney .b 8133 to 8665 538 to 1       538/539
(99 %)
6 diff
(98.9 %id)
AB096241 mammary gland .c 1 to 9542 1 to 9542 S719N tiling clone,   9542/9542
(100 %)
2 diff
(100.0 %id)
AA126803.
matches multiple genes
uterus .c 7767 to 8291 519 to 5     also hits gene PRRX1 515/533
(96 %)
0 diff
(100 %id)
DA831231 placenta .c 7775 to 8538 2 to 759   capped   758/831
(91 %)
8 diff
(99.1 %id)
D59828   .c 7845 to 8311 1 to 464       464/472
(98 %)
4 diff
(99.2 %id)
BI869861 adenocarcinoma, cell line, Liver .c 7871 to 8655 1 to 778       778/778
(100 %)
12 diff
(98.5 %id)
TI_57228924   .c 7871 to 8655 57 to 834       778/778
(100 %)
12 diff
(98.5 %id)
BI869862 adenocarcinoma, cell line, Liver .c 7872 to 8662 1 to 785       785/785
(100 %)
18 diff
(97.8 %id)
TI_57228925   .c 7872 to 8662 56 to 840       785/785
(100 %)
18 diff
(97.8 %id)
CK429170 eye, lacrimal gland .c 7981 to 8619 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
BG429015 Kidney .c 8002 to 8716 1 to 727       727/727
(100 %)
32 diff
(95.6 %id)
AW613118 colon, moderately-differentiated adenocarcinoma .c 8075 to 8295 221 to 1       221/221
(100 %)
0 diff
(100 %id)
BF245996 brain, glioblastoma .c 8097 to 8740 1 to 648       648/648
(100 %)
16 diff
(97.6 %id)
CR740033 multiple sclerosis lesions .c 8438 to 9119 1 to 682       682/682
(100 %)
0 diff
(100 %id)
N79369 multiple sclerosis lesions .c 8450 to 8837 1 to 410       410/422
(97 %)
32 diff
(92.5 %id)
BQ723735 sympathetic trunk .c 8527 to 9367 1 to 848       848/903
(93 %)
25 diff
(97.3 %id)
TI_159717031   .c 8556 to 9542 1075 to 94   AAA   982/1021
(96 %)
23 diff
(97.8 %id)
BI962914 Islets of Langerhans, Pancreas .c 8710 to 9246 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
BG249614 hypernephroma, cell line, Kidney .c 8792 to 9542 1 to 754       754/1140
(66 %)
29 diff
(97.5 %id)
CB852588 Human Lung Epithelial cells, lung .c 8874 to 9542 685 to 17   AAA   669/669
(100 %)
1 diff
(99.9 %id)
DB376784 placenta .c 8910 to 9506 590 to 1   tiling clone,   590/590
(100 %)
17 diff
(97.2 %id)
AW195437 Kidney .c 8956 to 9267 312 to 1       312/312
(100 %)
3 diff
(99.1 %id)
CN255508 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 8965 to 9341 1 to 377       377/377
(100 %)
2 diff
(99.5 %id)
D59637   .c 9066 to 9409 343 to 1       343/343
(100 %)
2 diff
(99.5 %id)
D59827   .c 9125 to 9409 286 to 1       286/287
(99 %)
4 diff
(98.7 %id)
D59550   .c 9128 to 9409 283 to 1       283/284
(99 %)
3 diff
(99.0 %id)
AI471614 Kidney .c 9143 to 9267 125 to 1       125/125
(100 %)
0 diff
(100 %id)
AI521768 Kidney .c 9281 to 9542 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
AW772733 normal epithelium, thyroid .c 9282 to 9528 1 to 246     Submitted on the opposite strand 246/248
(99 %)
6 diff
(97.6 %id)
N62407 multiple sclerosis lesions .c 9341 to 9542 202 to 1       202/202
(100 %)
1 diff
(99.6 %id)
AW864270 stomach_normal .d-u 1 to 530 1 to 532 L30F T31N S32* tiling clone,   532/535
(99 %)
10 diff
(98.2 %id)
AK095101 hippocampus Gene ZC3H12C, variant not shown       available from FLJ, This clone was ignored    
BG926933 cartilage Gene ZC3H12C, variant not shown         Suspected internal deletion, this clone was ignored    
DB308419 hippocampus Gene ZC3H12C, variant not shown         This clone was ignored    
CA392681 eye, RPE/choroid Gene ZC3H12C, variant not shown       AAA Suspected internal deletion, this clone was ignored    
CA392682 eye, RPE/choroid Gene ZC3H12C, variant not shown         Suspected internal deletion, this clone was ignored    
DB359736 whole embryo, mainly body Gene ZC3H12C, variant not shown         This clone was ignored    
DA572664 whole embryo, mainly body Gene ZC3H12C, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC