To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene JHDM1DTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
231 supporting clones for gene JHDM1D back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB452205 testis JHDM1D.a 1 to 503 1 to 503   tiling clone,   503/503
(100 %)
0 diff
(100 %id)
DB456463 testis JHDM1D.a 1 to 509 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
AK131497 trachea JHDM1D.a 94 to 3801 1 to 3707   tiling clone, available from FLJ,   3707/3707
(100 %)
2 diff
(100.0 %id)
NM_030647.1   JHDM1D.a 95 to 9272 1 to 9178   RefSeq,   9178/9178
(100 %)
0 diff
(100 %id)
DB215199 trachea JHDM1D.a 95 to 593 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
BQ423991 eye, retinoblastoma JHDM1D.a 115 to 658 1 to 553       553/1041
(53 %)
22 diff
(97.9 %id)
CA397738 eye, RPE/choroid JHDM1D.a 147 to 750 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
BI022126 marrow JHDM1D.a 163 to 593 1 to 430       430/430
(100 %)
17 diff
(96.1 %id)
DB077866 testis JHDM1D.a 511 to 1088 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
CF142658 lymph JHDM1D.a 558 to 852 1 to 295       295/295
(100 %)
4 diff
(98.7 %id)
CF142732 lymph JHDM1D.a 558 to 1047 1 to 490       490/490
(100 %)
4 diff
(99.2 %id)
TI_154173729   JHDM1D.a 565 to 1091 81 to 610       530/729
(72 %)
23 diff
(96.9 %id)
TI_154173874   JHDM1D.a 565 to 1133 92 to 664       573/1276
(44 %)
9 diff
(99.3 %id)
BI025841 marrow JHDM1D.a 738 to 1200 468 to 7       462/468
(98 %)
5 diff
(99.0 %id)
BX649115 human fetal kidney JHDM1D.a 828 to 9271 1 to 8443   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 8443/8443
(100 %)
10 diff
(99.9 %id)
DR980469 placenta JHDM1D.a 1009 to 1151 152 to 10       143/161
(88 %)
0 diff
(100 %id)
BE883178 leiomyosarcoma, uterus JHDM1D.a 1168 to 1849 1 to 683       683/772
(88 %)
12 diff
(98.5 %id)
FN123193 breast carcinoma JHDM1D.a 1235 to 1323 1 to 87       87/88
(98 %)
4 diff
(95.5 %id)
CB240794 Human Lung Epithelial cells, lung JHDM1D.a 1250 to 1941 692 to 1       692/692
(100 %)
11 diff
(98.5 %id)
TI_149283517   JHDM1D.a 1254 to 1945 751 to 59       693/793
(87 %)
8 diff
(99.0 %id)
BE676073 B-cell, chronic lymphotic leukemia JHDM1D.a 1343 to 1926 584 to 1       584/727
(80 %)
15 diff
(98.0 %id)
BM984139 lung, Primary Lung Epithelial Cells JHDM1D.a 1349 to 1941 593 to 1       593/593
(100 %)
6 diff
(99.0 %id)
AW299622 Kidney JHDM1D.a 1461 to 1919 465 to 7       459/465
(98 %)
4 diff
(99.2 %id)
AA931204 Kidney JHDM1D.a 1478 to 1925 447 to 1       447/447
(100 %)
5 diff
(98.9 %id)
H92418 eye, retina JHDM1D.a 1588 to 1912 331 to 1     Submitted on the opposite strand 331/334
(99 %)
7 diff
(98.0 %id)
BJ989716 hepatoblastoma JHDM1D.a 1742 to 2341 1 to 600       600/600
(100 %)
6 diff
(99.0 %id)
AB051505   JHDM1D.a 1790 to 9270 1 to 7480   tiling clone, available from KIAA,   7480/7480
(100 %)
6 diff
(100.0 %id)
AW137593   JHDM1D.a 1815 to 2172 360 to 3       358/360
(99 %)
1 diff
(99.8 %id)
BF939419 Prostate JHDM1D.a 1854 to 2114 306 to 46       261/322
(81 %)
21 diff
(93.5 %id)
BF826059 head_normal JHDM1D.a 1943 to 2206 1 to 263       263/263
(100 %)
4 diff
(98.5 %id)
CF272564   JHDM1D.a 1968 to 2599 1 to 630       630/630
(100 %)
5 diff
(99.3 %id)
W96405 heart JHDM1D.a 2451 to 2900 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
H75441 liver and spleen JHDM1D.a 2536 to 2783 1 to 252     Submitted on the opposite strand 252/338
(74 %)
5 diff
(98.6 %id)
BX483746   JHDM1D.a 2894 to 3620 1 to 727       727/727
(100 %)
0 diff
(100 %id)
N39491 placenta JHDM1D.a 2941 to 3162 11 to 232       222/232
(95 %)
6 diff
(97.5 %id)
BE928265 colon JHDM1D.a 2959 to 3521 566 to 6       561/566
(99 %)
0 diff
(100 %id)
BE972542 testis JHDM1D.a 3065 to 3516 1 to 451       451/452
(99 %)
4 diff
(99.2 %id)
AL603107 human skeletal muscle JHDM1D.a 3185 to 3830 1 to 645       645/645
(100 %)
2 diff
(99.7 %id)
R69698 placenta JHDM1D.a 3205 to 3432 1 to 229   fully sequenced,   229/229
(100 %)
1 diff
(99.6 %id)
BQ026076 placenta JHDM1D.a 3246 to 3776 548 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 531/531
(100 %)
0 diff
(100 %id)
DB349021 trachea JHDM1D.a 3250 to 3801 553 to 1       553/553
(100 %)
1 diff
(99.9 %id)
TI_154164033   JHDM1D.a 3261 to 3802 650 to 109     Submitted on the opposite strand 542/885
(61 %)
0 diff
(100 %id)
CF135589 lymph JHDM1D.a 3268 to 3802 574 to 40     Submitted on the opposite strand 535/581
(92 %)
0 diff
(100 %id)
AW294022   JHDM1D.a 3285 to 3801 534 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 517/517
(100 %)
1 diff
(99.9 %id)
DB521880 testis JHDM1D.a 3319 to 3801 1 to 483     Submitted on the opposite strand 483/484
(99 %)
1 diff
(99.8 %id)
AW468350 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood JHDM1D.a 3330 to 3801 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AW071463 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma JHDM1D.a 3332 to 3796 464 to 1       464/464
(100 %)
3 diff
(99.4 %id)
DB517757 testis JHDM1D.a 3360 to 3801 1 to 442     Submitted on the opposite strand 442/443
(99 %)
1 diff
(99.8 %id)
W96406 heart JHDM1D.a 3366 to 3802 442 to 1       442/442
(100 %)
7 diff
(98.5 %id)
N26794 placenta JHDM1D.a 3371 to 3802 443 to 1       443/449
(98 %)
14 diff
(96.9 %id)
AW169536 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus JHDM1D.a 3380 to 3796 421 to 5       417/421
(99 %)
0 diff
(100 %id)
N26802 placenta JHDM1D.a 3390 to 3801 417 to 1       417/417
(100 %)
6 diff
(98.6 %id)
R69609 placenta JHDM1D.a 3402 to 3746 347 to 1   fully sequenced,   347/347
(100 %)
2 diff
(99.5 %id)
BX495535 Liver JHDM1D.a 3580 to 4089 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
EH349308   JHDM1D.a 3591 to 3671 1 to 81       81/81
(100 %)
0 diff
(100 %id)
AI918379 adenocarcinoma, Pancreas JHDM1D.a 3592 to 3801 209 to 1       209/209
(100 %)
1 diff
(99.6 %id)
BE501169 pooled germ cell tumors JHDM1D.a 3599 to 3801 203 to 1       203/207
(98 %)
0 diff
(100 %id)
CN277636 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 JHDM1D.a 3612 to 4023 1 to 412       412/412
(100 %)
20 diff
(95.2 %id)
BE767169 nervous_tumor JHDM1D.a 3686 to 3842 1 to 156       156/162
(96 %)
5 diff
(97.0 %id)
BE767232 nervous_tumor JHDM1D.a 3688 to 3842 15 to 169       155/175
(88 %)
2 diff
(98.9 %id)
BE551842 pooled germ cell tumors JHDM1D.a 3701 to 4207 523 to 16   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 508/508
(100 %)
1 diff
(99.9 %id)
AI799414 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus JHDM1D.a 3702 to 3801 100 to 1       100/100
(100 %)
0 diff
(100 %id)
AA565845 adrenal adenoma, adrenal gland JHDM1D.a 3717 to 4141 427 to 3       425/427
(99 %)
0 diff
(100 %id)
AL700728 human skeletal muscle JHDM1D.a 3993 to 4480 1 to 488       488/488
(100 %)
8 diff
(98.4 %id)
DA808159 brain JHDM1D.a 4249 to 4771 2 to 523   capped   522/532
(98 %)
1 diff
(99.9 %id)
DA810246 brain JHDM1D.a 4254 to 4814 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BE164776 head_neck JHDM1D.a 4355 to 4956 606 to 2     Submitted on the opposite strand 605/606
(99 %)
0 diff
(100 %id)
AL601884   JHDM1D.a 4518 to 5172 1 to 652       652/652
(100 %)
5 diff
(99.3 %id)
EH333667   JHDM1D.a 4539 to 4612 1 to 74       74/74
(100 %)
0 diff
(100 %id)
N49508 multiple sclerosis lesions JHDM1D.a 4628 to 4842 1 to 215       215/215
(100 %)
2 diff
(99.1 %id)
DA211493 brain JHDM1D.a 5239 to 5779 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB235216 trachea JHDM1D.a 5250 to 5816 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB144301 thymus JHDM1D.a 5521 to 6049 2 to 532   capped   531/531
(100 %)
2 diff
(99.7 %id)
DB216097 trachea JHDM1D.a 5623 to 6173 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AV691888 hepatocellular carcinoma JHDM1D.a 5638 to 6041 1 to 399       399/399
(100 %)
2 diff
(99.5 %id)
AV691737 hepatocellular carcinoma JHDM1D.a 5638 to 6421 1 to 777       777/781
(99 %)
32 diff
(96.0 %id)
DA733596   JHDM1D.a 5843 to 6379 2 to 537   capped   536/536
(100 %)
2 diff
(99.7 %id)
DA814790   JHDM1D.a 5957 to 6427 2 to 474   capped   473/473
(100 %)
3 diff
(99.4 %id)
DB164003 thymus JHDM1D.a 5957 to 6551 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA392683 thalamus JHDM1D.a 5962 to 6553 2 to 593   tiling clone, capped   592/592
(100 %)
1 diff
(99.9 %id)
BM457826 lymph, lymphoma, cell line JHDM1D.a 6003 to 6873 1 to 875       875/877
(99 %)
8 diff
(99.1 %id)
DA802153 brain JHDM1D.a 6015 to 6590 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
T71397 liver and spleen JHDM1D.a 6021 to 6419 1 to 412       412/412
(100 %)
13 diff
(96.9 %id)
AW500085 lymph JHDM1D.a 6029 to 6520 8 to 499       492/499
(98 %)
6 diff
(98.8 %id)
TI_154154229   JHDM1D.a 6029 to 6656 80 to 705       626/632
(99 %)
15 diff
(97.7 %id)
DB073027 testis JHDM1D.a 6119 to 6658 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA271971 caudate nucleus JHDM1D.a 6158 to 6734 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
AA336908 endometrium JHDM1D.a 6220 to 6509 1 to 291       291/291
(100 %)
1 diff
(99.7 %id)
AW966205   JHDM1D.a 6221 to 6799 1 to 576       576/576
(100 %)
25 diff
(95.7 %id)
BQ694781 adipose JHDM1D.a 6394 to 6827 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
DB156958 thymus JHDM1D.a 6414 to 6997 2 to 584   tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
DA942752 Spleen JHDM1D.a 6543 to 7130 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA676980   JHDM1D.a 6595 to 7113 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DA158341 amygdala JHDM1D.a 6605 to 7166 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB257615 uterus JHDM1D.a 6616 to 7191 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA392019 thalamus JHDM1D.a 6661 to 7255 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
AA333724   JHDM1D.a 6691 to 6939 1 to 249       249/249
(100 %)
1 diff
(99.6 %id)
DA488221 brain JHDM1D.a 6707 to 7264 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
CN255535 embryonic stem cells, DMSO-treated H9 cellline JHDM1D.a 6808 to 7432 1 to 626       626/626
(100 %)
2 diff
(99.7 %id)
AW966271   JHDM1D.a 6861 to 7429 1 to 571       571/574
(99 %)
6 diff
(99.0 %id)
AA338820 brain JHDM1D.a 6871 to 7269 1 to 410       410/410
(100 %)
14 diff
(96.6 %id)
DA948952 Spleen JHDM1D.a 7052 to 7604 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AK057208 synovial membrane tissue from rheumatioidarthritis JHDM1D.a 7110 to 9246 1 to 2137   available from FLJ,   2137/2137
(100 %)
3 diff
(99.9 %id)
DA971715 synovial membrane tissue from rheumatioidarthritis JHDM1D.a 7111 to 7574 2 to 465   capped   464/464
(100 %)
0 diff
(100 %id)
DA073112 cerebellum JHDM1D.a 7115 to 7691 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DB127093 thymus JHDM1D.a 7130 to 7669 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA040338 bladder JHDM1D.a 7154 to 7716 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
T71263 liver and spleen JHDM1D.a 7189 to 7410 394 to 173       222/394
(56 %)
0 diff
(100 %id)
DB258116 uterus JHDM1D.a 7221 to 7802 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DN914358   JHDM1D.a 7231 to 7842 1 to 612       612/612
(100 %)
0 diff
(100 %id)
DN919083   JHDM1D.a 7231 to 7634 1 to 404       404/404
(100 %)
1 diff
(99.8 %id)
DN919622   JHDM1D.a 7231 to 7769 1 to 539       539/539
(100 %)
0 diff
(100 %id)
BF107113 placenta JHDM1D.a 7326 to 7919 1 to 590       590/828
(71 %)
14 diff
(98.4 %id)
AW848575 colon JHDM1D.a 7486 to 7688 67 to 269       203/269
(75 %)
6 diff
(97.8 %id)
AW848707 colon JHDM1D.a 7486 to 7688 67 to 269       203/269
(75 %)
6 diff
(97.8 %id)
N25109 melanocyte JHDM1D.a 7488 to 7992 1 to 507       507/507
(100 %)
9 diff
(98.3 %id)
AA371581   JHDM1D.a 7494 to 7822 1 to 329       329/329
(100 %)
0 diff
(100 %id)
BQ639304 eye, retina JHDM1D.a 7525 to 8117 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BY994125   JHDM1D.a 7541 to 8262 16 to 737       722/737
(97 %)
6 diff
(99.2 %id)
BE141500 head_neck JHDM1D.a 7574 to 8075 1 to 498       498/498
(100 %)
12 diff
(97.6 %id)
AW365942 head_neck JHDM1D.a 7582 to 8118 10 to 547       538/549
(97 %)
12 diff
(97.9 %id)
DA360980 subthalamic nucleus JHDM1D.a 7601 to 8167 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
AA377237 small intestine JHDM1D.a 7616 to 7906 1 to 291       291/291
(100 %)
0 diff
(100 %id)
AW954483   JHDM1D.a 7622 to 7877 1 to 256       256/267
(95 %)
1 diff
(99.7 %id)
BM314587 Pancreas, Purified pancreatic islet JHDM1D.a 7703 to 8273 1 to 571       571/571
(100 %)
0 diff
(100 %id)
BF103802 embryonal carcinoma, testis JHDM1D.a 7794 to 8309 1 to 525       525/1036
(50 %)
15 diff
(98.6 %id)
CN255533 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 JHDM1D.a 7816 to 8533 1 to 718       718/718
(100 %)
0 diff
(100 %id)
BF211556 bone marrow, from chronic myelogenous leukemia JHDM1D.a 7932 to 8564 1 to 631       631/631
(100 %)
13 diff
(98.0 %id)
AW365955 head_neck JHDM1D.a 7981 to 8512 531 to 1       531/531
(100 %)
7 diff
(98.7 %id)
AW365982 head_neck JHDM1D.a 8016 to 8520 507 to 2       506/508
(99 %)
0 diff
(100 %id)
AW365973 head_neck JHDM1D.a 8023 to 8456 440 to 5       436/440
(99 %)
0 diff
(100 %id)
AL048932 testis JHDM1D.a 8033 to 8527 55 to 548       494/548
(90 %)
6 diff
(99.0 %id)
AA280201 germinal center B cell JHDM1D.a 8043 to 8517 1 to 475       475/475
(100 %)
1 diff
(99.8 %id)
CR741572   JHDM1D.a 8070 to 8793 1 to 726       726/736
(98 %)
8 diff
(99.0 %id)
AW662561 colon, moderately-differentiated adenocarcinoma JHDM1D.a 8070 to 8528 459 to 1       459/459
(100 %)
0 diff
(100 %id)
N46600 multiple sclerosis lesions JHDM1D.a 8271 to 8518 1 to 248       248/248
(100 %)
0 diff
(100 %id)
CN255534 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells JHDM1D.a 8376 to 9051 674 to 1     Submitted on the opposite strand 674/674
(100 %)
4 diff
(99.5 %id)
TI_154114393   JHDM1D.a 8406 to 9162 867 to 111   AAA   757/959
(78 %)
58 diff
(94.0 %id)
AL048933 testis JHDM1D.a 8425 to 9144 722 to 1       722/722
(100 %)
3 diff
(99.6 %id)
C01340   JHDM1D.a 8427 to 8742 1 to 319       319/326
(97 %)
15 diff
(95.4 %id)
BM707013 eye, optic nerve JHDM1D.a 8427 to 8997 5 to 575   fully sequenced,   571/575
(99 %)
6 diff
(99.0 %id)
TI_157613251   JHDM1D.a 8432 to 9159 815 to 87   AAA   729/736
(99 %)
10 diff
(98.7 %id)
BF229454 colon_ins JHDM1D.a 8438 to 8839 431 to 31       401/431
(93 %)
0 diff
(100 %id)
BF229456 colon_ins JHDM1D.a 8483 to 8957 480 to 5       476/480
(99 %)
0 diff
(100 %id)
BM795359 Ascites, stomach JHDM1D.a 8497 to 8802 1 to 306       306/306
(100 %)
1 diff
(99.7 %id)
CF528065 placenta JHDM1D.a 8527 to 9159 650 to 18   AAA   633/633
(100 %)
1 diff
(99.9 %id)
BE217882 carcinoid, lung JHDM1D.a 8544 to 9161 618 to 1       618/618
(100 %)
0 diff
(100 %id)
BM794258 Ascites, stomach JHDM1D.a 8547 to 8900 1 to 354       354/354
(100 %)
9 diff
(97.5 %id)
H42623 breast JHDM1D.a 8554 to 8711 1 to 162       162/162
(100 %)
4 diff
(97.6 %id)
AI271440 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus JHDM1D.a 8568 to 9163 594 to 2       593/594
(99 %)
0 diff
(100 %id)
AI092964 heart JHDM1D.a 8576 to 9162 584 to 1       584/584
(100 %)
2 diff
(99.7 %id)
BQ787925 Pancreas, Purified pancreatic islet JHDM1D.a 8582 to 9162 582 to 1       582/582
(100 %)
4 diff
(99.4 %id)
BQ574146 Chondrosarcoma Grade II, Left Pelvis JHDM1D.a 8607 to 9162 574 to 19   AAA   556/556
(100 %)
0 diff
(100 %id)
BX110196 brain JHDM1D.a 8610 to 8895 1 to 286       286/286
(100 %)
1 diff
(99.7 %id)
AI760926 2 pooled tumors (clear cell type), Kidney JHDM1D.a 8622 to 9166 548 to 4       545/548
(99 %)
0 diff
(100 %id)
BG681758 skin, squamous cell carcinoma JHDM1D.a 8637 to 9162 1 to 525   AAA   525/525
(100 %)
1 diff
(99.9 %id)
AI333315 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus JHDM1D.a 8640 to 9163 521 to 1       521/521
(100 %)
2 diff
(99.7 %id)
AA889492 parathyroid gland, parathyroid tumor JHDM1D.a 8650 to 9162 522 to 11   AAA   512/512
(100 %)
2 diff
(99.7 %id)
AI680148 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus JHDM1D.a 8653 to 9163 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
CK821223 Islets of Langerhans, Pancreas JHDM1D.a 8657 to 9162 506 to 1       506/517
(97 %)
2 diff
(99.7 %id)
CK821224 Islets of Langerhans, Pancreas JHDM1D.a 8658 to 9162 1 to 505   AAA   505/505
(100 %)
2 diff
(99.7 %id)
BQ007406 placenta JHDM1D.a 8671 to 9162 506 to 18   AAA   489/489
(100 %)
2 diff
(99.6 %id)
BI962694 Islets of Langerhans, Pancreas JHDM1D.a 8674 to 9101 1 to 428       428/428
(100 %)
2 diff
(99.6 %id)
BI962652 Islets of Langerhans, Pancreas JHDM1D.a 8674 to 9101 1 to 428       428/428
(100 %)
2 diff
(99.6 %id)
AI138940   JHDM1D.a 8677 to 9163 487 to 4       484/487
(99 %)
0 diff
(100 %id)
AI416991 B-cell, chronic lymphotic leukemia JHDM1D.a 8679 to 9163 486 to 2       485/486
(99 %)
0 diff
(100 %id)
AW023890 cochlea, ear JHDM1D.a 8680 to 9060 8 to 388       381/388
(98 %)
5 diff
(98.8 %id)
AI082757 liver and spleen JHDM1D.a 8684 to 9162 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
AI687147 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus JHDM1D.a 8684 to 9163 482 to 1       482/482
(100 %)
2 diff
(99.6 %id)
AA280380 germinal center B cell JHDM1D.a 8685 to 8991 338 to 28       311/338
(92 %)
0 diff
(100 %id)
AI445890 poorly differentiated adenocarcinoma withsignet ring cell features, stomach JHDM1D.a 8685 to 9162 478 to 1       478/478
(100 %)
0 diff
(100 %id)
AI559407 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors JHDM1D.a 8685 to 9163 476 to 1       476/476
(100 %)
2 diff
(99.6 %id)
AI923885 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors JHDM1D.a 8685 to 9163 484 to 6       479/484
(98 %)
0 diff
(100 %id)
N40556 multiple sclerosis lesions JHDM1D.a 8702 to 9162 467 to 1       467/467
(100 %)
21 diff
(95.6 %id)
BI789174 Islets of Langerhans, Pancreas JHDM1D.a 8704 to 9162 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
AW079043 esophagus, squamous cell carcinoma JHDM1D.a 8707 to 9162 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
BF447830 carcinoid, lung JHDM1D.a 8707 to 9115 409 to 1       409/409
(100 %)
0 diff
(100 %id)
DB365536   JHDM1D.a 8709 to 9270 558 to 1       558/561
(99 %)
9 diff
(98.4 %id)
DB334801 synovial membrane tissue from rheumatioidarthritis JHDM1D.a 8711 to 9246 536 to 1       536/536
(100 %)
2 diff
(99.7 %id)
AI079486 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus JHDM1D.a 8716 to 9162 444 to 1       444/444
(100 %)
2 diff
(99.6 %id)
AI623964 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors JHDM1D.a 8733 to 9163 431 to 3       429/431
(99 %)
0 diff
(100 %id)
AW517814 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors JHDM1D.a 8745 to 9161 414 to 1       414/414
(100 %)
2 diff
(99.6 %id)
AW451587   JHDM1D.a 8746 to 9166 438 to 18   AAA   421/421
(100 %)
3 diff
(99.3 %id)
AI566301 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) JHDM1D.a 8748 to 9161 414 to 1       414/414
(100 %)
0 diff
(100 %id)
AI032887 parathyroid gland, parathyroid tumor JHDM1D.a 8754 to 9162 429 to 21   AAA   409/409
(100 %)
3 diff
(99.3 %id)
DB333308 Spleen JHDM1D.a 8764 to 9275 509 to 1       509/509
(100 %)
3 diff
(99.5 %id)
AI498456 Kidney JHDM1D.a 8774 to 9163 392 to 3       390/392
(99 %)
0 diff
(100 %id)
AI933592 poorly differentiated adenocarcinoma withsignet ring cell features, stomach JHDM1D.a 8786 to 9162 400 to 27   AAA   374/379
(98 %)
5 diff
(98.7 %id)
AW137893   JHDM1D.a 8795 to 9166 389 to 18   AAA   372/379
(98 %)
0 diff
(100 %id)
DN919082   JHDM1D.a 8823 to 9091 269 to 1       269/269
(100 %)
21 diff
(92.2 %id)
AI761493 colon, colon tumor, RER+ JHDM1D.a 8824 to 9092 269 to 1       269/269
(100 %)
1 diff
(99.7 %id)
BU728311 eye, optic nerve JHDM1D.a 8971 to 9162 209 to 19   fully sequenced, AAA   191/191
(100 %)
26 diff
(86.4 %id)
BF063674 colon, colon tumor, RER+ JHDM1D.a 8972 to 9157 188 to 3       186/188
(98 %)
0 diff
(100 %id)
BX641017 human fetal kidney JHDM1D.b 1 to 7942 1 to 7941 T271I tiling clone, available from DKFZ, AAA   7941/7941
(100 %)
10 diff
(99.9 %id)
DA834042 placenta JHDM1D.b 3194 to 3872 2 to 680   capped   679/685
(99 %)
2 diff
(99.8 %id)
BM711039 eye, fetal eyes JHDM1D.b 6904 to 7403 1 to 500   tiling clone,   500/500
(100 %)
0 diff
(100 %id)
H52364 liver and spleen JHDM1D.b 6934 to 7326 1 to 402       402/446
(90 %)
9 diff
(98.0 %id)
R16961 liver and spleen JHDM1D.b 7022 to 7430 1 to 422       422/443
(95 %)
13 diff
(97.1 %id)
H47810 liver and spleen JHDM1D.b 7040 to 7430 1 to 394       394/444
(88 %)
4 diff
(99.1 %id)
T81883 liver and spleen JHDM1D.b 7116 to 7455 1 to 351       351/351
(100 %)
9 diff
(97.5 %id)
T82008 liver and spleen JHDM1D.b 7116 to 7422 1 to 307       307/307
(100 %)
0 diff
(100 %id)
TI_154053587   JHDM1D.b 7143 to 8050 977 to 87   tiling clone, AAA   891/1008
(88 %)
25 diff
(97.6 %id)
BU621843 Bone, Subchondral Bone JHDM1D.b 7278 to 8026 761 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 743/743
(100 %)
6 diff
(99.2 %id)
H22632 brain JHDM1D.b 7381 to 7727 4 to 354   fully sequenced,   351/354
(99 %)
6 diff
(98.4 %id)
DN914359   JHDM1D.b 7386 to 8045 654 to 2       653/654
(99 %)
0 diff
(100 %id)
CA415557 Chondrosarcoma Grade II, Left Pelvis JHDM1D.b 7415 to 8050 654 to 19   AAA   636/636
(100 %)
1 diff
(99.9 %id)
BM666127 eye, fetal eyes JHDM1D.b 7455 to 8050 614 to 19   AAA   596/596
(100 %)
2 diff
(99.7 %id)
DN919623   JHDM1D.b 7463 to 8044 635 to 55       581/635
(91 %)
0 diff
(100 %id)
BF593929 pooled JHDM1D.b 7497 to 8052 554 to 2       553/554
(99 %)
0 diff
(100 %id)
BQ774388 Chondrosarcoma Grade II, Left Pelvis JHDM1D.b 7523 to 8050 545 to 19   AAA   527/549
(95 %)
6 diff
(99.0 %id)
AI741387 pooled JHDM1D.b 7527 to 8052 531 to 6       526/531
(99 %)
0 diff
(100 %id)
AW190196 serous papillary carcinoma, high grade, 2pooled tumors, uterus JHDM1D.b 7531 to 8045 517 to 2       516/517
(99 %)
0 diff
(100 %id)
BE464680 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney JHDM1D.b 7535 to 8051 514 to 1       514/514
(100 %)
4 diff
(99.3 %id)
AA553490 Schwannoma tumor JHDM1D.b 7553 to 8024 472 to 1       472/472
(100 %)
3 diff
(99.4 %id)
AW469642 pooled JHDM1D.b 7566 to 8020 460 to 6       455/460
(98 %)
0 diff
(100 %id)
BM314282 Pancreas, Purified pancreatic islet JHDM1D.b 7569 to 8059 494 to 4       491/494
(99 %)
11 diff
(97.8 %id)
AW001900 thymus, pooled JHDM1D.b 7589 to 8044 467 to 12   AAA   456/456
(100 %)
5 diff
(99.0 %id)
AW027109 thymus, pooled JHDM1D.b 7591 to 8044 465 to 12   AAA   454/454
(100 %)
4 diff
(99.2 %id)
R16906 liver and spleen JHDM1D.b 7615 to 8029 426 to 1       426/429
(99 %)
37 diff
(91.4 %id)
H96979 melanocyte JHDM1D.b 7619 to 7988 373 to 1       373/378
(98 %)
5 diff
(98.7 %id)
DB381096 placenta JHDM1D.b 7640 to 8119 480 to 1       480/484
(99 %)
1 diff
(99.8 %id)
H52365 liver and spleen JHDM1D.b 7649 to 8042 398 to 1       398/399
(99 %)
7 diff
(98.3 %id)
AI270190 colon, moderately-differentiated adenocarcinoma JHDM1D.b 7659 to 8045 387 to 1       387/387
(100 %)
1 diff
(99.8 %id)
BF438739 pooled JHDM1D.b 7669 to 8050 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
BF590084 pooled JHDM1D.b 7691 to 7986 297 to 1       297/297
(100 %)
2 diff
(99.4 %id)
H22633 brain JHDM1D.b 7697 to 8043 359 to 10   fully sequenced,   350/359
(97 %)
10 diff
(97.3 %id)
AI537552 poorly differentiated adenocarcinoma withsignet ring cell features, stomach JHDM1D.b 7720 to 8051 332 to 1       332/332
(100 %)
4 diff
(98.8 %id)
T71558 liver and spleen JHDM1D.b 7746 to 8044 303 to 5       299/303
(98 %)
0 diff
(100 %id)
AI565231 pooled JHDM1D.b 7754 to 8049 296 to 1       296/296
(100 %)
2 diff
(99.4 %id)
H48145 liver and spleen JHDM1D.b 7759 to 8018 261 to 1       261/263
(99 %)
7 diff
(97.4 %id)
AI336798 pooled JHDM1D.b 7760 to 8120 361 to 1       361/361
(100 %)
1 diff
(99.8 %id)
AA904952 pooled JHDM1D.b 7797 to 8120 324 to 1   tiling clone,   324/324
(100 %)
1 diff
(99.7 %id)
AA377236 small intestine JHDM1D.b 7845 to 8050 208 to 1       208/208
(100 %)
4 diff
(98.1 %id)
AW021702 cochlea, ear JHDM1D.b 7883 to 8052 8 to 177       170/194
(87 %)
2 diff
(99.0 %id)
AW021776 cochlea, ear JHDM1D.b 7883 to 8052 8 to 177       170/194
(87 %)
2 diff
(99.0 %id)
T71208 liver and spleen JHDM1D.b 7925 to 8044 120 to 1       120/120
(100 %)
1 diff
(99.2 %id)
BX366325 Placenta Cot 25-normalized JHDM1D.c 1 to 795 1 to 797 A27D H61P G62A S63A C64V ... tiling clone,   797/867
(91 %)
31 diff
(96.5 %id)
DA672776   JHDM1D.d 1 to 592 2 to 594 A25G P26S G27R R28P A29G ... tiling clone, capped   593/593
(100 %)
1 diff
(99.9 %id)
CV575762 cornea, eye JHDM1D.e 1 to 624 1 to 624 exact tiling clone,   624/624
(100 %)
0 diff
(100 %id)
BC127006 PCR rescued clones JHDM1D.e 150 to 573 424 to 1     Submitted on the opposite strand 424/432
(98 %)
4 diff
(99.1 %id)
BC127007 PCR rescued clones JHDM1D.e 150 to 573 9 to 432       424/432
(98 %)
6 diff
(98.7 %id)
CF272565   JHDM1D.e 260 to 934 1 to 675   tiling clone,   675/675
(100 %)
4 diff
(99.5 %id)
BX334938 Placenta Cot 25-normalized JHDM1D.f-u 1 to 1013 1014 to 1 exact tiling clone,   1014/1014
(100 %)
12 diff
(98.9 %id)
BX373051 Placenta Cot 25-normalized JHDM1D.f-u 212 to 1061 856 to 1 F2K H3R S6X Q7I I8T ... tiling clone,   856/909
(94 %)
23 diff
(97.5 %id)
BG566898 Liver JHDM1D.g-u 654 to 769 660 to 778 P22Q D23M D24I S25Q V26S ... tiling clone,   696/781
(89 %)
33 diff
(95.8 %id)
BI028283 marrow JHDM1D.h-u 1 to 371 371 to 1 exact tiling clone,   371/371
(100 %)
0 diff
(100 %id)
AF049567 soft tissue JHDM1D.i-u 1 to 182 182 to 1 exact tiling clone,   182/183
(99 %)
0 diff
(100 %id)
DB315884 brain Gene JHDM1D, variant not shown              
DA501581 brain Gene JHDM1D, variant not shown       capped      
H53046 liver and spleen Gene JHDM1D, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C