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Gene RAVER2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
162 supporting clones for gene RAVER2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN287018 embryonic stem cells, cell lines H1, H7, andH9 .a 1 to 243 1 to 243   tiling clone,   243/243
(100 %)
0 diff
(100 %id)
BX422607 fetal liver, Liver .a 127 to 1180 1 to 1040   tiling clone,   1040/1067
(97 %)
30 diff
(97.2 %id)
DR763173 embryonic stem .a 371 to 512 1 to 142       142/142
(100 %)
1 diff
(99.3 %id)
AB046799   .a 380 to 4738 1 to 4352   tiling clone, available from KIAA,   4352/4352
(100 %)
6 diff
(99.9 %id)
NM_018211.3   .a 380 to 4738 1 to 4359   RefSeq, AAA   4359/4359
(100 %)
0 diff
(100 %id)
DA124163 cerebellum .a 612 to 1170 2 to 560   capped   559/561
(99 %)
1 diff
(99.9 %id)
AW842825 colon_normal .a 744 to 1226 1 to 484       484/484
(100 %)
15 diff
(97.0 %id)
DB231797 trachea .a 814 to 1367 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DR006203 Prostate .a 869 to 1523 1 to 655       655/655
(100 %)
4 diff
(99.4 %id)
DA729558   .a 885 to 1416 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BP351948   .a 918 to 1501 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
DB227410 trachea .a 975 to 1560 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
CX761472 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 1005 to 1647 1 to 637       637/839
(75 %)
8 diff
(99.1 %id)
DA119691 cerebellum .a 1118 to 1655 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DB222417 trachea .a 1157 to 1740 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA324152 hippocampus .a 1227 to 1785 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA233954 brain .a 1232 to 1815 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA225960 brain .a 1247 to 1779 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
AA102019 colon, tumor .a 1274 to 1680 1 to 410       410/410
(100 %)
8 diff
(98.1 %id)
BG954449 colon .a 1342 to 1601 263 to 5       259/263
(98 %)
3 diff
(98.9 %id)
DA442114 tongue, tumor tissue .a 1375 to 1937 2 to 564   capped   563/587
(95 %)
4 diff
(99.4 %id)
DA482843   .a 1442 to 2031 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA111364 cerebellum .a 1451 to 2027 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB240200 trachea .a 1498 to 2067 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DR002606 fetal brain .a 1595 to 2074 1 to 481       481/481
(100 %)
6 diff
(98.8 %id)
CA391267 eye, RPE/choroid .a 1624 to 2124 1 to 501       501/501
(100 %)
0 diff
(100 %id)
DA710140   .a 1708 to 2245 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
AL359613 melanoma (MeWo cell line) .a 1774 to 4738 1 to 2958   available from DKFZ, AAA   2958/2958
(100 %)
6 diff
(99.8 %id)
AA332488 Embryo, 8 weeks .a 1837 to 1974 1 to 138       138/138
(100 %)
0 diff
(100 %id)
AA332533 Embryo, 8 weeks .a 1837 to 2174 1 to 337       337/337
(100 %)
3 diff
(99.2 %id)
AA332923 Embryo, 8 weeks .a 1837 to 2164 1 to 330       330/334
(98 %)
3 diff
(99.2 %id)
AA333645 Embryo, 8 weeks .a 1837 to 2200 1 to 367       367/368
(99 %)
14 diff
(96.2 %id)
DA394569 thalamus .a 2055 to 2645 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
BQ440315 leiomyosarcoma, uterus .a 2081 to 2929 1 to 854       854/861
(99 %)
10 diff
(98.9 %id)
BM473456 duodenal adenocarcinoma, cell line, small intestine .a 2221 to 3280 1 to 1068       1068/1068
(100 %)
30 diff
(97.2 %id)
DA090915 cerebellum .a 2264 to 2819 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BE885410 leiomyosarcoma, uterus .a 2269 to 2977 1 to 702       702/830
(84 %)
14 diff
(98.4 %id)
FN132778 breast carcinoma .a 2302 to 2392 91 to 1     Submitted on the opposite strand 91/92
(98 %)
0 diff
(100 %id)
BF724568 eye, Iris .a 2310 to 2729 1 to 420       420/420
(100 %)
2 diff
(99.6 %id)
DA179084 amygdala .a 2347 to 2914 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB033889 testis .a 2355 to 2921 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
W01429 lung .a 2366 to 2691 1 to 329       329/333
(98 %)
4 diff
(98.8 %id)
BX411427 fetal liver, Liver .a 2370 to 2893 521 to 1       521/545
(95 %)
28 diff
(94.9 %id)
AA099628 colon, tumor .a 2433 to 2859 432 to 1       432/437
(98 %)
5 diff
(98.9 %id)
DA361458 subthalamic nucleus .a 2469 to 3024 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA718427   .a 2512 to 3086 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
TI_159714355   .a 2535 to 3190 761 to 103   AAA   659/1000
(65 %)
27 diff
(97.3 %id)
BM726952 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2585 to 3310 1 to 723       723/726
(99 %)
5 diff
(99.4 %id)
BE842970 stomach .a 2619 to 3001 1 to 381       381/381
(100 %)
7 diff
(98.2 %id)
AW382364 head_neck .a 2624 to 3001 9 to 384       376/384
(97 %)
6 diff
(98.5 %id)
AW382366 head_neck .a 2624 to 3001 24 to 399       376/399
(94 %)
6 diff
(98.5 %id)
BE842895 stomach .a 2630 to 2953 324 to 1       324/324
(100 %)
9 diff
(97.3 %id)
BI047520 stomach .a 2630 to 3009 398 to 23       376/398
(94 %)
0 diff
(100 %id)
BQ364086 stomach .a 2630 to 3001 1 to 372       372/372
(100 %)
0 diff
(100 %id)
AW382365 head_neck .a 2632 to 3007 385 to 15       371/387
(95 %)
0 diff
(100 %id)
BQ363242 stomach .a 2650 to 3001 1 to 355       355/355
(100 %)
21 diff
(94.1 %id)
DB166592 kidney, tumor tissue .a 2656 to 3187 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BX422606 fetal liver, Liver .a 2684 to 3119 463 to 26       438/474
(92 %)
0 diff
(100 %id)
AA095304   .a 2690 to 2876 1 to 184       184/187
(98 %)
9 diff
(95.2 %id)
BE842896 stomach .a 2691 to 3001 1 to 315       315/315
(100 %)
6 diff
(98.1 %id)
CB306883 Human Lung Epithelial cells, lung .a 2691 to 3190 516 to 17   AAA   500/500
(100 %)
3 diff
(99.4 %id)
DB126471 thymus .a 2701 to 3272 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA833033 placenta .a 2717 to 3522 2 to 807   capped   806/806
(100 %)
9 diff
(98.9 %id)
FN047128 breast carcinoma .a 2737 to 2850 114 to 1     Submitted on the opposite strand 114/114
(100 %)
0 diff
(100 %id)
AK058029 stomach mucosa .a 2742 to 4738 1 to 1990   available from FLJ,   1990/1990
(100 %)
6 diff
(99.7 %id)
BX089588 whole brain .a 2765 to 3288 1 to 524       524/524
(100 %)
0 diff
(100 %id)
R59513 whole brain .a 2766 to 3131 1 to 373       373/473
(78 %)
11 diff
(97.7 %id)
BY800333 eye .a 2779 to 3276 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
BF724567 eye, Iris .a 2798 to 3348 573 to 23   AAA   551/551
(100 %)
0 diff
(100 %id)
AI039422   .a 2818 to 3279 462 to 1       462/462
(100 %)
2 diff
(99.6 %id)
CR603062 B cells (Ramos cell line) Cot 25-normalized .a 2826 to 4406 1 to 1581   tiling clone,   1581/1581
(100 %)
0 diff
(100 %id)
AL561624 B cells from Burkitt lymphoma .a 2826 to 3838 1 to 1000       1000/1000
(100 %)
60 diff
(94.0 %id)
BG104505 adrenal cortex carcinoma, cell line, adrenal gland .a 2883 to 3632 1 to 749       749/931
(80 %)
24 diff
(97.5 %id)
DA069497 cerebellum .a 2917 to 3420 2 to 508   capped   507/507
(100 %)
4 diff
(99.3 %id)
AA258352 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2919 to 3353 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
AW188671 colon, moderately differentiated adenocarcinoma .a 2923 to 3348 453 to 27   AAA   427/427
(100 %)
4 diff
(99.1 %id)
G36937   .a 2925 to 3348 431 to 1     Submitted on the opposite strand 431/431
(100 %)
11 diff
(97.5 %id)
N70832 lung .a 2925 to 3348 431 to 1       431/431
(100 %)
11 diff
(97.5 %id)
DA374306 thalamus .a 2936 to 3497 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA427326 colon .a 2952 to 3521 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA178024 amygdala .a 2985 to 3492 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
DA142771 alzheimer cortex .a 2986 to 3554 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB007045 cervix, tumor tissue .a 3000 to 3551 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
DA365037 subthalamic nucleus .a 3029 to 3579 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BU188065 leiomyosarcoma, uterus .a 3030 to 3915 1 to 891       891/899
(99 %)
14 diff
(98.5 %id)
AW009574 colon .a 3078 to 3276 199 to 1       199/199
(100 %)
0 diff
(100 %id)
FN099045 breast carcinoma .a 3106 to 3225 1 to 126       126/127
(99 %)
6 diff
(95.3 %id)
BU949367 Pancreas, Purified pancreatic islet .a 3171 to 3627 17 to 473       457/473
(96 %)
6 diff
(98.8 %id)
BQ291547 amnion_normal .a 3319 to 3726 1 to 405       405/405
(100 %)
7 diff
(98.3 %id)
BQ311653 breast_normal .a 3319 to 3793 1 to 471       471/471
(100 %)
5 diff
(99.0 %id)
BQ311652 breast_normal .a 3320 to 3881 1 to 558       558/558
(100 %)
5 diff
(99.2 %id)
BQ338307 nervous_normal .a 3323 to 3675 15 to 363       349/363
(96 %)
6 diff
(98.4 %id)
BQ291531 amnion_normal .a 3328 to 3695 31 to 397       367/397
(92 %)
6 diff
(98.5 %id)
BQ291532 amnion_normal .a 3330 to 3711 1 to 381       381/381
(100 %)
5 diff
(98.7 %id)
BQ291546 amnion_normal .a 3331 to 3737 1 to 405       405/405
(100 %)
5 diff
(98.8 %id)
BQ291545 amnion_normal .a 3334 to 3647 328 to 14       315/328
(96 %)
0 diff
(100 %id)
BQ371500 prostate_normal .a 3335 to 3886 564 to 15       550/564
(97 %)
0 diff
(100 %id)
BQ371287 prostate_normal .a 3339 to 3772 1 to 434       434/434
(100 %)
3 diff
(99.4 %id)
BQ291544 amnion_normal .a 3340 to 3704 1 to 364       364/364
(100 %)
8 diff
(97.9 %id)
BQ371280 prostate_normal .a 3341 to 3830 1 to 493       493/493
(100 %)
9 diff
(98.2 %id)
BQ371291 prostate_normal .a 3342 to 3842 1 to 508       508/508
(100 %)
20 diff
(96.1 %id)
BQ371282 prostate_normal .a 3343 to 3844 1 to 505       505/505
(100 %)
8 diff
(98.5 %id)
BQ371288 prostate_normal .a 3345 to 3782 1 to 438       438/438
(100 %)
1 diff
(99.8 %id)
BQ371290 prostate_normal .a 3350 to 3829 1 to 483       483/483
(100 %)
14 diff
(97.2 %id)
BQ371279 prostate_normal .a 3360 to 3811 454 to 2       453/454
(99 %)
0 diff
(100 %id)
BQ311654 breast_normal .a 3363 to 3882 537 to 23       515/537
(95 %)
0 diff
(100 %id)
BQ371283 prostate_normal .a 3367 to 3862 504 to 3       502/506
(99 %)
0 diff
(100 %id)
BQ371289 prostate_normal .a 3367 to 3885 519 to 2       518/521
(99 %)
0 diff
(100 %id)
BQ371281 prostate_normal .a 3371 to 3795 466 to 35       432/466
(92 %)
0 diff
(100 %id)
BQ371284 prostate_normal .a 3372 to 3876 506 to 1       506/506
(100 %)
9 diff
(98.3 %id)
BQ371278 prostate_normal .a 3382 to 3748 7 to 377       371/377
(98 %)
9 diff
(97.7 %id)
BQ371285 prostate_normal .a 3399 to 3833 437 to 4       434/437
(99 %)
0 diff
(100 %id)
AI908375 breast .a 3400 to 3889 494 to 8       487/494
(98 %)
0 diff
(100 %id)
AI908373 breast .a 3403 to 3889 491 to 8       484/491
(98 %)
0 diff
(100 %id)
AI908372 breast .a 3406 to 3889 537 to 54       484/537
(90 %)
0 diff
(100 %id)
BQ371286 prostate_normal .a 3406 to 3835 49 to 478       430/478
(89 %)
6 diff
(98.8 %id)
BF325657 amnion_normal .a 3470 to 3886 429 to 14       416/429
(96 %)
0 diff
(100 %id)
BF325753 amnion_normal .a 3470 to 3886 426 to 13       414/426
(97 %)
0 diff
(100 %id)
BF325756 amnion_normal .a 3471 to 3857 397 to 11       387/397
(97 %)
0 diff
(100 %id)
BF325656 amnion_normal .a 3483 to 3825 352 to 12       341/352
(96 %)
0 diff
(100 %id)
CD675247 eye, lens .a 3493 to 4217 1 to 722       722/722
(100 %)
3 diff
(99.6 %id)
CB148466 Liver .a 3530 to 4123 1 to 594       594/594
(100 %)
6 diff
(99.0 %id)
CB120769 Liver .a 3633 to 4313 1 to 678       678/678
(100 %)
2 diff
(99.8 %id)
T93938 liver and spleen .a 3712 to 4038 9 to 337       329/429
(76 %)
4 diff
(99.1 %id)
BM464298 leiomyosarcoma, uterus .a 3804 to 4736 1 to 934       934/940
(99 %)
11 diff
(98.9 %id)
CK902508 Pancreas, Purified pancreatic islet .a 3840 to 4119 23 to 302     Submitted on the opposite strand 280/302
(92 %)
6 diff
(98.1 %id)
CA773764 Pancreas, Purified pancreatic islet .a 3845 to 4447 1 to 603       603/603
(100 %)
0 diff
(100 %id)
CA773836 Pancreas, Purified pancreatic islet .a 3845 to 4503 1 to 655       655/655
(100 %)
2 diff
(99.7 %id)
N30979 melanocyte .a 3875 to 4286 1 to 415       415/427
(97 %)
10 diff
(97.7 %id)
AI908295 breast .a 3897 to 4458 1 to 561       561/586
(95 %)
11 diff
(98.2 %id)
H96002 melanocyte .a 3898 to 4249 1 to 357       357/370
(96 %)
12 diff
(96.8 %id)
R86133 breast .a 3985 to 4260 278 to 1     Submitted on the opposite strand 278/278
(100 %)
1 diff
(99.7 %id)
EH349056   .a 4011 to 4107 1 to 97       97/99
(97 %)
1 diff
(99.0 %id)
CA314731 Human Lung Epithelial cells, lung .a 4090 to 4738 668 to 19   AAA   650/650
(100 %)
3 diff
(99.6 %id)
DB379569 placenta .a 4190 to 4738 545 to 1   tiling clone,   545/565
(96 %)
14 diff
(97.6 %id)
AL582783 B cells from Burkitt lymphoma .a 4262 to 4693 441 to 1       893/960
(93 %)
51 diff
(94.7 %id)
BU069119 Pancreas, Purified pancreatic islet .a 4270 to 4737 471 to 1       471/471
(100 %)
8 diff
(98.4 %id)
AI613455 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 4319 to 4739 418 to 1       418/418
(100 %)
10 diff
(97.7 %id)
H92728 pineal gland .a 4342 to 4626 354 to 64       291/362
(80 %)
0 diff
(100 %id)
DB337268 testis .a 4382 to 4738 360 to 1   tiling clone,   360/360
(100 %)
4 diff
(98.9 %id)
R59514 whole brain .a 4408 to 4741 336 to 3   tiling clone,   334/336
(99 %)
0 diff
(100 %id)
BI260470 cervical carcinoma cell line, cervix .a 4428 to 4739 1 to 308   AAA   308/308
(100 %)
4 diff
(98.8 %id)
AI478248 Kidney .a 4433 to 4738 306 to 1       306/306
(100 %)
3 diff
(99.1 %id)
AW022606 cochlea, ear .a 4487 to 4738 10 to 261   AAA   252/261
(96 %)
6 diff
(97.8 %id)
N21581 melanocyte .a 4525 to 4738 215 to 1       215/215
(100 %)
2 diff
(99.1 %id)
BC065303 Uterus, leiomyosarcoma .b 1 to 2399 1 to 2399 exact tiling clone, available from MGC, AAA   2399/2399
(100 %)
0 diff
(100 %id)
BQ434628 leiomyosarcoma, uterus .b 3 to 824 1 to 825   available from MGC,   825/825
(100 %)
4 diff
(99.6 %id)
AK299228   .c -8 to 890 1 to 899 exact tiling clone,   899/899
(100 %)
2 diff
(99.8 %id)
DC371268   .c -8 to 557 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
BX641193   .d 1 to 669 1 to 669   tiling clone,   669/669
(100 %)
1 diff
(99.9 %id)
DB229587 trachea .d 192 to 757 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DA103896 cerebellum .d 443 to 997 2 to 559   tiling clone, capped   558/558
(100 %)
3 diff
(99.5 %id)
AW268101 ovary, papillary serous carcinoma .d 670 to 869 10 to 209   AAA Submitted on the opposite strand 200/238
(84 %)
5 diff
(97.9 %id)
CN267979 embryonic stem cells, cell lines H1, H7, andH9 .d 964 to 1654 1 to 691   tiling clone,   691/691
(100 %)
1 diff
(99.9 %id)
BX497579 Liver .d 1536 to 2097 1 to 562   tiling clone,   562/562
(100 %)
4 diff
(99.3 %id)
AA481855 ovarian tumor, ovary .d 1550 to 2000 458 to 8     Submitted on the opposite strand 451/458
(98 %)
0 diff
(100 %id)
DB213068 trachea .d 1640 to 2188 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DB348878 trachea .d 4513 to 5061 551 to 1   tiling clone,   551/551
(100 %)
3 diff
(99.5 %id)
DB299350 cerebellum .d 4517 to 5061 548 to 1   tiling clone,   548/548
(100 %)
6 diff
(99.0 %id)
AK001632   .e 1 to 2530 2 to 2530 N88K tiling clone, available from FLJ,   2530/2530
(100 %)
2 diff
(100.0 %id)
AU132593   .e 1 to 887 2 to 888 N88K capped   887/887
(100 %)
7 diff
(99.3 %id)
BP223813 colon mucosa .e 660 to 1274 1 to 619       619/682
(90 %)
5 diff
(99.3 %id)
CA424812 cell lines, Chondrosarcoma .e 1900 to 2509 628 to 19   AAA   610/610
(100 %)
1 diff
(99.9 %id)
BU632153 cell lines, Chondrosarcoma .e 1940 to 2509 588 to 19   AAA   570/570
(100 %)
0 diff
(100 %id)
AU154101   .e 1974 to 2530 559 to 1       559/566
(98 %)
14 diff
(97.6 %id)
BI013133 lung_tumor .e 2317 to 2547 1 to 227   tiling clone,   227/227
(100 %)
8 diff
(96.5 %id)
DA226931 brain .f 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BG034429 breast, mammary adenocarcinoma, cell line .f 444 to 1013 1 to 570   tiling clone,   772/834
(92 %)
19 diff
(97.8 %id)
DB299940 cerebellum Gene RAVER2, variant not shown              
DA111977 cerebellum Gene RAVER2, variant not shown       capped      
CN269057 embryonic stem cells, DMSO-treated H9 cellline Gene RAVER2, variant not shown              
DA451782 tongue, tumor tissue Gene RAVER2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DN913234   Gene RAVER2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI