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Gene KIAA1549TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
117 supporting clones for gene KIAA1549 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AM989469 brain .a 1 to 6283 1 to 6283 exact tiling clone,   6283/6283
(100 %)
0 diff
(100 %id)
AM989472 brain .a 1 to 5297 1 to 5297       5297/6567
(80 %)
1 diff
(100.0 %id)
AM989473 brain .a 1 to 5300 1 to 5300       5300/6393
(82 %)
3 diff
(100.0 %id)
AM989474 brain .a 1 to 4979 1 to 4979       4979/6249
(79 %)
0 diff
(100 %id)
NM_001164665.1   .a 1 to 12427 1 to 12427 exact RefSeq,   12427/12427
(100 %)
0 diff
(100 %id)
BF743444 breast .a 870 to 1122 13 to 265       253/276
(91 %)
4 diff
(98.6 %id)
CV411053 amnion_normal .a 2005 to 2298 11 to 305       295/309
(95 %)
25 diff
(92.0 %id)
BF203910 muscle, rhabdomyosarcoma .a 2296 to 3062 1 to 752       755/896
(84 %)
30 diff
(96.7 %id)
BF306469 muscle, rhabdomyosarcoma .a 2297 to 2999 1 to 708       708/1091
(64 %)
39 diff
(96.5 %id)
BF884773 lung_tumor .a 2553 to 2779 220 to 1     Submitted on the opposite strand 220/220
(100 %)
14 diff
(93.7 %id)
BF363306 nervous_normal .a 2801 to 3252 17 to 465       449/465
(96 %)
7 diff
(98.5 %id)
BG180079 adenocarcinoma, cell line, Prostate .a 3054 to 3804 1 to 752       749/752
(99 %)
18 diff
(97.7 %id)
BC038232 Duodenum, adenocarcinoma .a 3431 to 6616 12 to 3197   available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3186/3186
(100 %)
0 diff
(100 %id)
BM558209 duodenal adenocarcinoma, cell line, small intestine .a 3432 to 4260 1 to 836   available from MGC,   836/1040
(80 %)
19 diff
(98.2 %id)
CO247598 Chondrosarcoma Lung Metastasis cell lines, lung .a 3787 to 4532 8 to 751       744/754
(98 %)
16 diff
(97.9 %id)
DA052160   .a 3849 to 4238 2 to 391   capped   390/390
(100 %)
0 diff
(100 %id)
CD656171 Embryonic Stem cells .a 3906 to 4694 1 to 786       786/786
(100 %)
7 diff
(99.2 %id)
BM564901 eye, retinoblastoma .a 3968 to 4824 1 to 859       859/1005
(85 %)
5 diff
(99.6 %id)
CN359881 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3976 to 4669 1 to 694       694/694
(100 %)
5 diff
(99.3 %id)
BU178367 melanotic melanoma, skin .a 4052 to 4880 1 to 838       838/917
(91 %)
27 diff
(97.1 %id)
AW753457 colon .a 4096 to 4714 12 to 630       619/630
(98 %)
9 diff
(98.6 %id)
BF819155 colon_ins .a 4335 to 4824 13 to 504       492/602
(81 %)
9 diff
(98.6 %id)
AA256911 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4626 to 5039 1 to 416       416/416
(100 %)
10 diff
(97.6 %id)
BQ346285 nervous_tumor .a 4729 to 5163 451 to 31       421/452
(93 %)
9 diff
(98.1 %id)
BF935664 nervous_tumor .a 4742 to 5118 378 to 1     Submitted on the opposite strand 378/379
(99 %)
11 diff
(97.1 %id)
BM558831 eye, retinoblastoma .a 4870 to 5860 1 to 1000       1000/1007
(99 %)
18 diff
(98.3 %id)
BC091523 Brain, glioblastoma .a 5091 to 6697 1 to 1607   AAA   1607/1607
(100 %)
0 diff
(100 %id)
CF242857 Brain glioblastoma .a 5091 to 5961 1 to 875       875/875
(100 %)
6 diff
(99.4 %id)
CF242846 Brain glioblastoma .a 5091 to 5881 1 to 801       801/844
(94 %)
18 diff
(97.9 %id)
F12416 brain, total brain .a 5388 to 5657 40 to 289       232/289
(80 %)
26 diff
(91.1 %id)
BU158038 ductal carcinoma, cell line, Pancreas .a 5771 to 6548 1 to 793       793/969
(81 %)
22 diff
(97.8 %id)
BM011472 brain, neuroblastoma, cell line .a 5793 to 6539 1 to 746       746/746
(100 %)
3 diff
(99.6 %id)
TI_59380637   .a 5794 to 6539 104 to 848       745/745
(100 %)
2 diff
(99.8 %id)
BM725745 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5794 to 6185 1 to 392   fully sequenced,   392/392
(100 %)
1 diff
(99.8 %id)
BF204594 muscle, rhabdomyosarcoma .a 5932 to 6686 1 to 735       735/838
(87 %)
32 diff
(96.2 %id)
BG178347 adenocarcinoma, cell line, Prostate .a 5934 to 6697 1 to 764       764/783
(97 %)
16 diff
(98.0 %id)
TI_153990956   .a 6059 to 6616 648 to 91   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 558/626
(89 %)
4 diff
(99.4 %id)
BM992220 Bone, Subchondral Bone .a 6119 to 6697 598 to 19   AAA   580/580
(100 %)
4 diff
(99.4 %id)
H11326.
matches multiple genes
whole brain .a 6146 to 6697 566 to 16   AAA also hits gene VSTM2A 551/561
(98 %)
13 diff
(97.7 %id)
AW206804   .a 6147 to 6616 487 to 18   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 470/470
(100 %)
1 diff
(99.8 %id)
BU740601 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6155 to 6699 562 to 17   fully sequenced, AAA   546/546
(100 %)
1 diff
(99.9 %id)
TI_149293243   .a 6160 to 7041 995 to 125   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 871/956
(91 %)
32 diff
(96.7 %id)
BE856405 brain, glioblastoma (pooled) .a 6188 to 6697 510 to 1       510/510
(100 %)
0 diff
(100 %id)
CA436509 Bone, Subchondral Bone .a 6192 to 6697 524 to 19   AAA   506/506
(100 %)
8 diff
(98.5 %id)
BX103034 whole brain .a 6196 to 6693 519 to 20       500/519
(96 %)
0 diff
(100 %id)
BF195765 Kidney .a 6206 to 6692 493 to 7       487/493
(98 %)
0 diff
(100 %id)
AI337160 pooled germ cell tumors .a 6237 to 6699 480 to 17   AAA   464/464
(100 %)
5 diff
(99.0 %id)
BG165936 hypernephroma, cell line, Kidney .a 6259 to 6697 1 to 439   AAA   439/439
(100 %)
3 diff
(99.4 %id)
AI744024 Kidney .a 6267 to 6698 434 to 3   tiling clone,   432/434
(99 %)
0 diff
(100 %id)
AW188608 colon, moderately differentiated adenocarcinoma .a 6308 to 6618 311 to 1       311/312
(99 %)
1 diff
(99.7 %id)
AI499829 anaplastic oligodendroglioma, brain .a 6310 to 6698 392 to 5       388/392
(98 %)
0 diff
(100 %id)
F10033 brain, total brain .a 6348 to 6697 350 to 1       350/350
(100 %)
0 diff
(100 %id)
AA886435 Kidney .a 6352 to 6699 349 to 1       349/358
(97 %)
1 diff
(99.8 %id)
AA255487 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6365 to 6699 335 to 1       335/335
(100 %)
0 diff
(100 %id)
DA503829 brain .a 6405 to 6964 2 to 562   tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
CR740857 colon .a 6411 to 6699 1 to 289   AAA   289/289
(100 %)
0 diff
(100 %id)
AA508761 colon .a 6445 to 6699 255 to 1       255/255
(100 %)
0 diff
(100 %id)
BU682577 lung .a 6461 to 7041 599 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 581/581
(100 %)
8 diff
(98.7 %id)
DA494007 brain .a 6724 to 7293 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA787365 brain .a 6794 to 7366 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
BU181774 epithelioid carcinoma, Pancreas .a 7200 to 8046 1 to 851   tiling clone,   851/851
(100 %)
18 diff
(97.9 %id)
DA228582 brain .a 7329 to 7848 2 to 522   tiling clone, capped   521/526
(99 %)
2 diff
(99.7 %id)
BG476930 melanotic melanoma, skin .a 7389 to 8155 1 to 770   tiling clone,   770/771
(99 %)
27 diff
(96.5 %id)
BE409314 choriocarcinoma, placenta .a 7409 to 8061 1 to 647   tiling clone,   647/679
(95 %)
10 diff
(98.6 %id)
BG825038 muscle, rhabdomyosarcoma .a 8054 to 8800 1 to 748   tiling clone,   748/749
(99 %)
11 diff
(98.6 %id)
DA501870 brain .a 8170 to 8725 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA797758 brain .a 8179 to 8748 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DA755969   .a 8431 to 8995 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA334952 hippocampus .a 8535 to 9062 2 to 533   tiling clone, capped   532/532
(100 %)
4 diff
(99.3 %id)
DA523956 brain .a 8829 to 9403 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA786598 brain .a 8879 to 9462 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA787222 brain .a 8947 to 9520 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB315547 brain .a 8953 to 9478 527 to 1       527/528
(99 %)
5 diff
(99.1 %id)
DA665479   .a 8959 to 9496 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA492957 brain .a 8970 to 9509 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
AK096022 Kidney .a 9029 to 11596 1 to 2566   tiling clone, available from FLJ,   2566/2566
(100 %)
5 diff
(99.9 %id)
DA623003 Kidney .a 9030 to 9613 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA498273 brain .a 9042 to 9618 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA786994 brain .a 9042 to 9608 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA781836 brain .a 9164 to 9725 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA159221 amygdala .a 9180 to 9742 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BQ433863 melanotic melanoma, skin .a 9213 to 10036 1 to 834       834/906
(92 %)
43 diff
(95.3 %id)
DA010176 adrenal gland .a 9272 to 9815 11 to 554   capped   544/553
(98 %)
6 diff
(99.0 %id)
BM013363 brain, neuroblastoma, cell line .a 9616 to 10478 1 to 875       875/880
(99 %)
53 diff
(94.0 %id)
TI_59380180   .a 9616 to 10478 114 to 988       875/880
(99 %)
53 diff
(94.0 %id)
BC069036 Brain, neuroblastoma .a 9617 to 11596 1 to 1980   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 1980/1980
(100 %)
1 diff
(100.0 %id)
BQ943382 brain, neuroblastoma, cell line .a 9619 to 10563 1 to 945   available from MGC,   945/954
(99 %)
14 diff
(98.6 %id)
BQ421692 embryonal carcinoma, cell line, testis .a 9951 to 10670 1 to 722   tiling clone,   722/874
(82 %)
5 diff
(99.5 %id)
AK021793 whole embryo, mainly head .a 10187 to 11596 1 to 1410   available from FLJ,   1410/1410
(100 %)
2 diff
(99.9 %id)
AU119262 whole embryo, mainly head .a 10188 to 10972 2 to 786   capped   785/785
(100 %)
3 diff
(99.7 %id)
DR978121 brain .a 10832 to 11028 200 to 5       196/209
(93 %)
0 diff
(100 %id)
AW027948 Kidney .a 11025 to 11596 572 to 1       572/572
(100 %)
1 diff
(99.9 %id)
DB315896 brain .a 11040 to 11596 558 to 1       558/558
(100 %)
1 diff
(99.9 %id)
AU145652 whole embryo, mainly head .a 11093 to 11596 504 to 1       504/579
(87 %)
10 diff
(98.3 %id)
DB320485 Kidney .a 11101 to 11596 496 to 1       496/496
(100 %)
0 diff
(100 %id)
BF743824 breast .a 11162 to 11345 1 to 184       184/184
(100 %)
9 diff
(95.2 %id)
BM712743 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 11595 to 11955 1 to 361   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 361/361
(100 %)
0 diff
(100 %id)
BG283145 adenocarcinoma, cell line, Prostate .a 11625 to 12406 1 to 770       770/896
(85 %)
21 diff
(97.7 %id)
AA188775   .a 11642 to 12025 1 to 385   fully sequenced,   385/385
(100 %)
3 diff
(99.3 %id)
BX106657 pooled .a 11683 to 12189 1 to 507       507/507
(100 %)
0 diff
(100 %id)
TI_149276552   .a 11756 to 12200 923 to 481       443/976
(45 %)
0 diff
(100 %id)
BE728681 melanotic melanoma, skin .a 11796 to 12417 1 to 627       627/630
(99 %)
15 diff
(97.7 %id)
DB305340 brain .a 11920 to 12424 505 to 1   tiling clone,   505/505
(100 %)
0 diff
(100 %id)
BM676088 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 11925 to 12424 518 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 500/500
(100 %)
0 diff
(100 %id)
AW300277 Kidney .a 11962 to 12424 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AA188785   .a 11995 to 12424 434 to 1   fully sequenced,   434/434
(100 %)
1 diff
(99.8 %id)
AI382121 pooled .a 11997 to 12427 435 to 5       431/435
(99 %)
0 diff
(100 %id)
AV704797 adrenal gland .a 12015 to 12424 1 to 410   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 410/410
(100 %)
0 diff
(100 %id)
AM989468 brain .b 1 to 6235 1 to 6235 exact tiling clone,   6235/6235
(100 %)
0 diff
(100 %id)
NM_020910.2   .b 1 to 12379 1 to 12379 exact RefSeq,   12379/12379
(100 %)
0 diff
(100 %id)
AB046769   .b 257 to 6651 1 to 6395   tiling clone, available from KIAA,   6395/6395
(100 %)
5 diff
(100.0 %id)
T74278 whole brain .b 5338 to 5705 1 to 362       360/365
(98 %)
17 diff
(95.4 %id)
H11353.
matches multiple genes
whole brain .b 5356 to 5887 1 to 535     also hits gene CTBP1 535/537
(99 %)
32 diff
(94.1 %id)
AL136736 testis .b 5478 to 6649 1 to 1172   available from DKFZ, AAA   1172/1172
(100 %)
1 diff
(100.0 %id)
CR533444   .b 5592 to 6107 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
BE005214 breast_normal .c 1 to 380 1 to 387   tiling clone,   387/387
(100 %)
20 diff
(94.9 %id)
AM989471 brain .c 122 to 2773 1 to 2652 exact tiling clone,   2652/2652
(100 %)
0 diff
(100 %id)
AM989475 brain .c 122 to 1787 1 to 1666       1666/2936
(56 %)
1 diff
(100.0 %id)
AM989476 brain .c 122 to 1790 1 to 1669       1669/2762
(60 %)
3 diff
(99.9 %id)
AM989477 brain .c 122 to 1469 1 to 1348       1348/2618
(51 %)
0 diff
(100 %id)
AM989470 brain .d 1 to 2604 1 to 2604 exact tiling clone,   2604/2604
(100 %)
0 diff
(100 %id)
TI_159700909   .e 1 to 812 939 to 140 G4D L6D N7W G8S S9E ... tiling clone, AAA   800/966
(82 %)
43 diff
(95.6 %id)
AA077585 brain .e 388 to 725 1 to 338   tiling clone,   338/338
(100 %)
2 diff
(99.5 %id)
G30683   .e 388 to 725 1 to 338       338/338
(100 %)
2 diff
(99.5 %id)
FN054596 breast carcinoma .e 728 to 811 84 to 1   tiling clone, Submitted on the opposite strand 84/85
(98 %)
2 diff
(97.7 %id)
BF927618 nervous_tumor .f 1 to 385 392 to 8 G28W Q33L A35S tiling clone, Submitted on the opposite strand 385/392
(98 %)
0 diff
(100 %id)
AI867021 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g-u 1 to 376 380 to 6 exact tiling clone,   375/380
(98 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C