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Gene KIAA1109TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
353 supporting clones for gene KIAA1109 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DQ335469   .a 1 to 15566 1 to 15566 N26G E155G M247T G336S D571G tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 15566/15566
(100 %)
8 diff
(100.0 %id)
NM_015312.3   .a 1 to 15574 1 to 15574 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 15574/15574
(100 %)
0 diff
(100 %id)
AA864610 germinal center B cell .a 450 to 974 529 to 6   tiling clone,   524/529
(99 %)
1 diff
(99.9 %id)
CN430082 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 531 to 1169 1 to 638   tiling clone,   638/638
(100 %)
2 diff
(99.7 %id)
BF512411   .a 535 to 981 450 to 4   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 447/450
(99 %)
0 diff
(100 %id)
DA328246 hippocampus .a 550 to 1023 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA675523   .a 1213 to 1800 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA510396 brain .a 1430 to 2001 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DN993068 brain, whole brain .a 1567 to 2171 11 to 615   tiling clone,   605/615
(98 %)
6 diff
(99.1 %id)
BF690677 melanotic melanoma, high MDR, skin .a 1668 to 2288 1 to 622       622/872
(71 %)
11 diff
(98.8 %id)
DA773108 brain .a 1778 to 2348 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BQ309006 breast .a 1824 to 2373 10 to 555       546/568
(96 %)
21 diff
(96.4 %id)
BQ309008 breast .a 1872 to 2083 1 to 217       217/223
(97 %)
12 diff
(94.7 %id)
BF992944 placenta_normal .a 2055 to 2445 21 to 411       391/411
(95 %)
14 diff
(96.6 %id)
FN109323 breast carcinoma .a 2712 to 2784 1 to 72   tiling clone,   72/72
(100 %)
1 diff
(98.7 %id)
BE003348 breast_normal .a 2762 to 3196 435 to 1     Submitted on the opposite strand 435/435
(100 %)
2 diff
(99.6 %id)
BE175190 head_neck .a 3054 to 3560 516 to 11     Submitted on the opposite strand 506/540
(93 %)
0 diff
(100 %id)
AA469162   .a 3159 to 3381 267 to 45       223/267
(83 %)
0 diff
(100 %id)
AA469163   .a 3160 to 3381 1 to 222       222/272
(81 %)
2 diff
(99.3 %id)
BF170133 blood .a 3233 to 3475 1 to 243       243/243
(100 %)
3 diff
(98.8 %id)
BX091509 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3518 to 4002 1 to 485       485/485
(100 %)
0 diff
(100 %id)
CA950501 Pancreas, Purified pancreatic islet .a 3552 to 3909 1 to 358   fully sequenced,   358/358
(100 %)
2 diff
(99.5 %id)
CA950626 Pancreas, Purified pancreatic islet .a 3582 to 3909 1 to 328   fully sequenced,   328/328
(100 %)
0 diff
(100 %id)
CK825021 Pancreas, Purified pancreatic islet .a 3603 to 4118 1 to 516     Submitted on the opposite strand 516/516
(100 %)
1 diff
(99.9 %id)
BQ185992 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3650 to 4292 1 to 643   AAA   643/643
(100 %)
0 diff
(100 %id)
DB309489 hippocampus .a 3728 to 4292 565 to 1       565/565
(100 %)
2 diff
(99.7 %id)
DB322395   .a 3757 to 4292 536 to 1       536/536
(100 %)
0 diff
(100 %id)
BM312175 Pancreas, Purified pancreatic islet .a 3762 to 4291 530 to 1       530/530
(100 %)
0 diff
(100 %id)
BU186087 eye, retinoblastoma .a 3797 to 4274 1 to 481       481/758
(63 %)
5 diff
(99.4 %id)
BY799399 eye .a 3822 to 4293 1 to 472       472/472
(100 %)
0 diff
(100 %id)
CK825022 Pancreas, Purified pancreatic islet .a 3834 to 4293 460 to 1     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
AI334367 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3836 to 4292 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AI379644 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3837 to 4295 459 to 1       459/459
(100 %)
0 diff
(100 %id)
CA950271 Pancreas, Purified pancreatic islet .a 3848 to 4291 444 to 1   fully sequenced,   444/444
(100 %)
0 diff
(100 %id)
CA950385 Pancreas, Purified pancreatic islet .a 3848 to 4291 444 to 1   fully sequenced,   444/444
(100 %)
0 diff
(100 %id)
BF950009 nervous_normal .a 4225 to 4779 566 to 10       557/566
(98 %)
39 diff
(93.2 %id)
AA917363 Kidney .a 4496 to 4807 312 to 1       312/312
(100 %)
0 diff
(100 %id)
DA327725 hippocampus .a 4881 to 5447 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AK095216   .a 5292 to 8479 1 to 3188   available from FLJ,   3188/3188
(100 %)
0 diff
(100 %id)
DA419833 cord Blood .a 5293 to 5844 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
AB029032 brain .a 5802 to 15566 1 to 9765   tiling clone, available from KIAA,   9765/9765
(100 %)
0 diff
(100 %id)
BF943873 nervous_normal .a 6300 to 6702 1 to 406       406/406
(100 %)
29 diff
(92.9 %id)
CN337937 embryonic stem cells, cell lines H1, H7, andH9 .a 6900 to 7565 8 to 672       665/672
(98 %)
6 diff
(99.2 %id)
BF772380 epid_tumor .a 6938 to 7303 1 to 366       366/366
(100 %)
0 diff
(100 %id)
BF845851 lung_normal .a 6977 to 7477 503 to 1     Submitted on the opposite strand 503/503
(100 %)
8 diff
(98.5 %id)
BF845846 lung_normal .a 6997 to 7517 533 to 15     Submitted on the opposite strand 519/533
(97 %)
0 diff
(100 %id)
BP199400 brain .a 7064 to 7645 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
TI_159702316   .a 7070 to 7858 831 to 51       781/1081
(72 %)
13 diff
(98.8 %id)
DA771652 brain .a 7094 to 7659 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BX473656   .a 7323 to 7782 1 to 460       460/460
(100 %)
5 diff
(99.0 %id)
DA246737 brain .a 7480 to 8060 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BQ368959 placenta_normal .a 7852 to 8157 10 to 314       305/314
(97 %)
6 diff
(98.1 %id)
BQ368571 placenta_normal .a 7857 to 8102 1 to 251       251/251
(100 %)
12 diff
(95.3 %id)
BQ368911 placenta_normal .a 7863 to 8382 1 to 520       520/537
(96 %)
21 diff
(96.1 %id)
BQ368903 placenta_normal .a 7883 to 8161 1 to 282       282/282
(100 %)
13 diff
(95.4 %id)
BQ368586 placenta_normal .a 7887 to 8382 1 to 491       491/504
(97 %)
19 diff
(96.3 %id)
DB312881 cord Blood .a 7955 to 8479 525 to 1       525/525
(100 %)
0 diff
(100 %id)
BP359835 thalamus .a 8024 to 8573 30 to 580       551/580
(95 %)
8 diff
(98.7 %id)
BE843541 testis_normal .a 8284 to 8565 18 to 301       284/302
(94 %)
10 diff
(96.7 %id)
BF948048 nervous_normal .a 8462 to 9084 641 to 20       623/642
(97 %)
5 diff
(99.3 %id)
TI_57190230   .a 8659 to 9434 56 to 838       783/783
(100 %)
26 diff
(96.7 %id)
BI856824 breast, mammary adenocarcinoma, cell line .a 8660 to 9434 1 to 782       782/782
(100 %)
26 diff
(96.7 %id)
AL598028   .a 8685 to 9033 16 to 356       341/356
(95 %)
6 diff
(98.4 %id)
BQ306524 breast .a 8874 to 9501 1 to 622       622/630
(98 %)
22 diff
(96.6 %id)
CA405786 adipose .a 9138 to 9695 1 to 558       558/558
(100 %)
3 diff
(99.5 %id)
BE770321 prostate_tumor .a 9180 to 9678 8 to 504       497/504
(98 %)
6 diff
(98.9 %id)
DR001948 fetal brain .a 9428 to 10189 1 to 762       762/762
(100 %)
4 diff
(99.5 %id)
AW995792 breast_normal .a 9548 to 9930 1 to 389       389/391
(99 %)
12 diff
(97.0 %id)
AW995877 breast_normal .a 9548 to 9930 1 to 389       389/391
(99 %)
12 diff
(97.0 %id)
DA226040 brain .a 9784 to 10300 2 to 520   capped   519/522
(99 %)
4 diff
(99.3 %id)
F00438 leg muscle, skeletal muscle .a 9877 to 10123 11 to 258       248/258
(96 %)
6 diff
(97.7 %id)
DA182823 amygdala .a 9931 to 10494 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
Z19508 leg muscle, skeletal muscle .a 10097 to 10406 310 to 1       310/338
(91 %)
3 diff
(99.2 %id)
CN337936 embryonic stem cells, cell lines H1, H7, andH9 .a 10197 to 10718 1 to 522       522/522
(100 %)
1 diff
(99.9 %id)
DA312803 hippocampus .a 10741 to 11197 2 to 458   capped   457/457
(100 %)
1 diff
(99.8 %id)
AL712202.
matches multiple genes
human skeletal muscle .a 11076 to 11593 1 to 518     also hits gene FMN1 518/518
(100 %)
0 diff
(100 %id)
DA497482 brain .a 11176 to 11749 2 to 575   capped   574/575
(99 %)
1 diff
(99.9 %id)
DA187114 amygdala .a 11344 to 11864 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA192638 amygdala .a 11426 to 12018 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA219038 brain .a 11531 to 12175 2 to 647   capped   646/646
(100 %)
1 diff
(99.9 %id)
Z42845 brain, total brain .a 11552 to 11831 1 to 280       280/280
(100 %)
0 diff
(100 %id)
DA406684 thalamus .a 11563 to 12128 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA410025 thalamus .a 11580 to 12139 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA500960 brain .a 11598 to 12161 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA801052 brain .a 11676 to 12172 2 to 498   capped   497/501
(99 %)
1 diff
(99.9 %id)
DA302900 hippocampus .a 11808 to 12381 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA162258 amygdala .a 11951 to 12517 2 to 568   capped   567/574
(98 %)
1 diff
(99.9 %id)
DA219741 brain .a 11969 to 12531 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA228574 brain .a 12043 to 12611 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
AA090088   .a 12048 to 12300 4 to 244       241/250
(96 %)
18 diff
(92.8 %id)
DB201175 trachea .a 12061 to 12660 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
AA213807 muscle, skeletal muscle .a 12066 to 12337 1 to 269     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 269/269
(100 %)
9 diff
(96.7 %id)
DB223596 trachea .a 12088 to 12660 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BM723800 eye, fetal eye .a 12215 to 12888 1 to 674     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 674/674
(100 %)
0 diff
(100 %id)
DA115579 cerebellum .a 12219 to 12775 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AK127698   .a 12220 to 15566 1 to 3346   available from FLJ,   3346/3346
(100 %)
3 diff
(100.0 %id)
DA710134   .a 12221 to 12750 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB086593 testis .a 12229 to 12810 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DB075437 testis .a 12238 to 12802 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA405344 thalamus .a 12246 to 12791 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
CD243708 testis .a 12262 to 13058 19 to 816       798/886
(90 %)
8 diff
(99.1 %id)
DA823861 pericardium .a 12276 to 12792 2 to 518   capped   517/517
(100 %)
2 diff
(99.7 %id)
BX495546 Liver .a 12359 to 12882 9 to 532       524/532
(98 %)
6 diff
(98.9 %id)
BU784220 insulinoma, Pancreas .a 12396 to 12916 11 to 530     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 520/536
(97 %)
8 diff
(98.6 %id)
DB085441 testis .a 12440 to 13003 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CN337941 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 12508 to 12927 1 to 420       420/420
(100 %)
0 diff
(100 %id)
DB027150 testis .a 12527 to 13079 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA945594 Spleen .a 12561 to 13143 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
CN337938 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 12592 to 13306 1 to 715       715/715
(100 %)
4 diff
(99.5 %id)
DA148952 amygdala .a 12651 to 13169 2 to 523   capped   522/522
(100 %)
4 diff
(99.3 %id)
EB388556 eye, optic nerve .a 12692 to 13594 1 to 903       903/903
(100 %)
1 diff
(99.9 %id)
AW176134 breast .a 12766 to 13013 12 to 257       246/274
(89 %)
7 diff
(97.5 %id)
DC341631 thalamus .a 12766 to 13350 1 to 585       585/585
(100 %)
0 diff
(100 %id)
AK303483 thymus .a 12773 to 15212 1 to 2440       2440/2440
(100 %)
4 diff
(99.9 %id)
DC409427 thymus .a 12773 to 13335 1 to 563       563/563
(100 %)
2 diff
(99.7 %id)
AL137532 testis .a 12778 to 15198 1 to 2421   available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2421/2421
(100 %)
0 diff
(100 %id)
DA394445 thalamus .a 12784 to 13314 2 to 532   capped   531/532
(99 %)
1 diff
(99.9 %id)
DA374170 thalamus .a 12814 to 13439 2 to 627   capped   626/626
(100 %)
0 diff
(100 %id)
DA365855 subthalamic nucleus .a 12815 to 13388 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
R76375 placenta .a 12850 to 13186 1 to 340       340/348
(97 %)
10 diff
(97.2 %id)
DA394724 thalamus .a 12899 to 13481 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BI553361 brain, hippocampus .a 12946 to 13833 1 to 898       896/898
(99 %)
25 diff
(97.3 %id)
TI_44170198   .a 12949 to 13833 84 to 978       895/978
(91 %)
26 diff
(97.4 %id)
DA166498 amygdala .a 12959 to 13527 2 to 570   capped   569/570
(99 %)
1 diff
(99.9 %id)
BC032408 Lung, Spleen, fetal, pooled .a 13012 to 15566 1 to 2553   available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2553/2553
(100 %)
2 diff
(100.0 %id)
BI770899 pooled lung and spleen .a 13012 to 13848 1 to 833   available from MGC,   833/835
(99 %)
14 diff
(98.4 %id)
TI_57182983   .a 13012 to 13848 32 to 864       833/866
(96 %)
20 diff
(97.7 %id)
FN153552 breast carcinoma .a 13031 to 13123 1 to 94       94/94
(100 %)
4 diff
(95.8 %id)
CD298666 Blood vessels - aorta, basilar and artery .a 13031 to 13769 1 to 752       750/766
(97 %)
21 diff
(97.3 %id)
DB169166 kidney, tumor tissue .a 13037 to 13603 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BQ278340 mixed (pool of 40 RNAs) .a 13089 to 13838 1 to 758       758/896
(84 %)
20 diff
(97.8 %id)
BF802753 colon_ins .a 13153 to 13461 309 to 1     Submitted on the opposite strand 309/309
(100 %)
0 diff
(100 %id)
DB180545 kidney, tumor tissue .a 13202 to 13763 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CN337940 embryonic stem cells, cell lines H1, H7, andH9 .a 13225 to 13925 25 to 725       701/725
(96 %)
6 diff
(99.2 %id)
DA170843 amygdala .a 13287 to 13848 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
FN082422 breast carcinoma .a 13296 to 13379 84 to 1     Submitted on the opposite strand 84/84
(100 %)
0 diff
(100 %id)
CF553045 Pooled muscle (cardiac and skeletal) .a 13360 to 14209 1 to 867       867/886
(97 %)
19 diff
(97.9 %id)
DA253216 caudate nucleus .a 13376 to 13960 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA146442 amygdala .a 13426 to 13989 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA256328 caudate nucleus .a 13456 to 14047 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
AA385836 thyroid gland .a 13474 to 13718 1 to 246       246/246
(100 %)
3 diff
(98.8 %id)
BF802752 colon_ins .a 13487 to 13588 119 to 18     Submitted on the opposite strand 102/119
(85 %)
0 diff
(100 %id)
FN096022 breast carcinoma .a 13509 to 13604 96 to 1     Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
CR621256 placenta .a 13547 to 15562 1 to 2016       2016/2016
(100 %)
0 diff
(100 %id)
BX417048 placenta .a 13547 to 14539 1 to 991       991/991
(100 %)
2 diff
(99.8 %id)
DA132034 alzheimer cortex .a 13634 to 14190 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CK003838 brain/CNS, Human Brain - Cerebellar Cortex .a 13646 to 14297 1 to 645       645/645
(100 %)
13 diff
(98.0 %id)
CB158383 Liver .a 13677 to 14227 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BI919203 brain .a 13720 to 14318 10 to 607       598/607
(98 %)
6 diff
(99.1 %id)
TI_57239474   .a 13720 to 14318 10 to 607       598/607
(98 %)
6 diff
(99.1 %id)
DN917616   .a 13769 to 14284 1 to 516       516/516
(100 %)
5 diff
(99.1 %id)
DA735637   .a 13787 to 14680 2 to 896   capped Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 895/907
(98 %)
10 diff
(98.9 %id)
BF365507 nervous_tumor .a 13814 to 14311 509 to 15       495/509
(97 %)
3 diff
(99.5 %id)
BE936470 nervous_tumor .a 13836 to 14310 1 to 473       473/478
(98 %)
7 diff
(98.6 %id)
BI823015 pooled brain, lung, testis .a 13870 to 14526 1 to 657       657/657
(100 %)
0 diff
(100 %id)
TI_57201568   .a 13870 to 14526 30 to 686       657/686
(95 %)
6 diff
(99.2 %id)
BM023361 Islets of Langerhans, Pancreas .a 13895 to 14484 7 to 596       590/596
(98 %)
1 diff
(99.9 %id)
CK904389 Islets of Langerhans, Pancreas .a 13895 to 14271 21 to 397       377/397
(94 %)
12 diff
(97.0 %id)
AK024043   .a 13897 to 15565 1 to 1669   available from FLJ,   1669/1669
(100 %)
0 diff
(100 %id)
AU143292   .a 13898 to 14738 2 to 837   capped   836/838
(99 %)
11 diff
(98.7 %id)
AW389346 stomach .a 13906 to 14544 660 to 29       632/703
(89 %)
11 diff
(98.5 %id)
BG545405 lung .a 13946 to 14678 1 to 736       736/739
(99 %)
15 diff
(98.0 %id)
AU116827 whole embryo, mainly head .a 13949 to 14773 2 to 833   capped   830/832
(99 %)
14 diff
(98.4 %id)
R14053 whole brain .a 14030 to 14358 1 to 332     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 332/389
(85 %)
12 diff
(97.0 %id)
H16644 whole brain .a 14030 to 14475 1 to 459     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 459/459
(100 %)
18 diff
(96.1 %id)
R20952 whole brain .a 14033 to 14388 1 to 358     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 358/445
(80 %)
4 diff
(99.2 %id)
R61572 whole brain .a 14033 to 14427 1 to 401     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 401/401
(100 %)
10 diff
(97.6 %id)
BC108274 Skin, melanotic melanoma. .a 14043 to 15566 1 to 1524   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1524/1524
(100 %)
1 diff
(100.0 %id)
BF332279 breast .a 14060 to 14343 330 to 42       289/330
(87 %)
0 diff
(100 %id)
BE896955 melanotic melanoma, skin .a 14063 to 14826 1 to 763       763/858
(88 %)
17 diff
(98.1 %id)
BF968429 adrenal cortex carcinoma, cell line, adrenal gland .a 14079 to 14798 8 to 723       716/958
(74 %)
25 diff
(97.4 %id)
BI018133 marrow .a 14096 to 14516 423 to 5       419/423
(99 %)
1 diff
(99.8 %id)
CD677296 eye, Trabecular meshwork .a 14101 to 14662 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
BM995557 lung, Metastatic Chondrosarcoma .a 14102 to 14679 581 to 4   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 578/581
(99 %)
0 diff
(100 %id)
BF904066 marrow .a 14146 to 14524 379 to 1     Submitted on the opposite strand 379/380
(99 %)
5 diff
(98.7 %id)
BF905704 marrow .a 14160 to 14474 324 to 11     Submitted on the opposite strand 314/324
(96 %)
1 diff
(99.7 %id)
AI800048 Prostate .a 14217 to 14663 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
BM686587 eye, optic nerve .a 14221 to 14824 1 to 605     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 605/605
(100 %)
4 diff
(99.4 %id)
AI420909 Prostate .a 14260 to 14663 404 to 1       404/404
(100 %)
2 diff
(99.6 %id)
AA731401 germinal center B cell .a 14264 to 14667 409 to 7       403/409
(98 %)
1 diff
(99.8 %id)
AV711965   .a 14268 to 14675 1 to 408       408/408
(100 %)
1 diff
(99.8 %id)
D80109 brain .a 14281 to 14511 1 to 230       230/230
(100 %)
3 diff
(98.7 %id)
AI207916 brain, oligodendroglioma .a 14288 to 14665 378 to 1       378/378
(100 %)
2 diff
(99.5 %id)
BG708541 brain, hypothalamus .a 14293 to 15146 1 to 855   available from MGC,   855/856
(99 %)
10 diff
(98.9 %id)
BG707507 brain, hypothalamus .a 14293 to 15027 1 to 734   available from MGC,   734/744
(98 %)
8 diff
(99.0 %id)
BC045783 Brain, hypothalamus .a 14298 to 15566 1 to 1270   available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1270/1270
(100 %)
1 diff
(100.0 %id)
BC018094 Brain, hypothalamus .a 14298 to 15566 1 to 1270   available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1270/1270
(100 %)
1 diff
(100.0 %id)
BE765773 nervous_tumor .a 14303 to 14538 1 to 236       236/236
(100 %)
2 diff
(99.2 %id)
FN096394 breast carcinoma .a 14312 to 14400 1 to 86       86/86
(100 %)
4 diff
(95.4 %id)
BE765885 nervous_tumor .a 14345 to 14788 444 to 1       444/448
(99 %)
2 diff
(99.6 %id)
BG707587 brain, hypothalamus .a 14346 to 14826 62 to 550       489/550
(88 %)
19 diff
(96.6 %id)
BX431359 placenta .a 14380 to 15314 1 to 935       935/940
(99 %)
19 diff
(98.0 %id)
AV721191 hypothalamus .a 14388 to 15053 1 to 658       658/722
(91 %)
46 diff
(93.7 %id)
AW629651 2 pooled high-grade transitional celltumors, genitourinary tract .a 14399 to 14866 1 to 468       468/468
(100 %)
0 diff
(100 %id)
BF790703 muscle (skeletal) .a 14404 to 15066 1 to 663       663/797
(83 %)
17 diff
(97.9 %id)
BM146304 leukopheresis .a 14421 to 14962 543 to 1       543/543
(100 %)
7 diff
(98.8 %id)
BE766434 nervous_tumor .a 14426 to 14836 411 to 1       411/411
(100 %)
3 diff
(99.3 %id)
AA247111   .a 14436 to 14689 251 to 2     Submitted on the opposite strand 250/271
(92 %)
5 diff
(98.2 %id)
BG435326 placenta .a 14447 to 15140 1 to 701       701/731
(95 %)
32 diff
(95.7 %id)
BF573893 muscle (skeletal) .a 14452 to 15072 1 to 616       616/817
(75 %)
25 diff
(97.0 %id)
BE766518 nervous_tumor .a 14489 to 14710 223 to 2       222/223
(99 %)
2 diff
(99.2 %id)
AA250877 germinal center B cell .a 14493 to 14908 1 to 417       417/417
(100 %)
2 diff
(99.6 %id)
BF671787 muscle (skeletal) .a 14498 to 15208 1 to 701       701/900
(77 %)
27 diff
(97.0 %id)
AA130074 uterus .a 14526 to 14670 1 to 145       145/147
(98 %)
4 diff
(97.3 %id)
AA877023 metastatic prostate bone lesion .a 14542 to 14667 1 to 126       126/136
(92 %)
1 diff
(99.3 %id)
BM023104 Islets of Langerhans, Pancreas .a 14599 to 15200 605 to 4       602/605
(99 %)
0 diff
(100 %id)
BE813999 breast_normal .a 14648 to 15022 375 to 4       372/375
(99 %)
0 diff
(100 %id)
AV724400 hypothalamus .a 14651 to 15017 1 to 360       360/370
(97 %)
8 diff
(97.9 %id)
BU947420 insulinoma, Pancreas .a 14667 to 15111 8 to 452   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 445/452
(98 %)
0 diff
(100 %id)
TI_149309970   .a 14679 to 15566 972 to 87   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 886/1025
(86 %)
8 diff
(99.3 %id)
FN085596 breast carcinoma .a 14687 to 14792 1 to 105       105/105
(100 %)
3 diff
(97.2 %id)
TI_154047934   .a 14688 to 15574 986 to 105   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 882/1021
(86 %)
12 diff
(98.9 %id)
BX454275 placenta .a 14716 to 15562 846 to 1     Submitted on the opposite strand 846/896
(94 %)
21 diff
(97.7 %id)
DB484684 hypothalamus .a 14720 to 15126 1 to 406       406/408
(99 %)
7 diff
(98.3 %id)
DB493837 hypothalamus .a 14720 to 15237 1 to 518       518/518
(100 %)
3 diff
(99.5 %id)
DB493838 hypothalamus .a 14720 to 15238 1 to 519       519/519
(100 %)
0 diff
(100 %id)
CA397295 eye, RPE/choroid .a 14721 to 15357 1 to 637       637/637
(100 %)
0 diff
(100 %id)
CD104750 Pooled-Skin .a 14739 to 15491 1 to 764       764/803
(95 %)
20 diff
(97.6 %id)
R23086 placenta .a 14749 to 15114 1 to 382       382/399
(95 %)
22 diff
(94.5 %id)
AV728803 hypothalamus .a 14768 to 15183 1 to 416       416/416
(100 %)
0 diff
(100 %id)
AA478663 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 14783 to 15340 1 to 558   fully sequenced,   558/558
(100 %)
0 diff
(100 %id)
BM725224 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 14783 to 14975 1 to 193   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 193/193
(100 %)
1 diff
(99.5 %id)
FN122802 breast carcinoma .a 14799 to 14899 101 to 1     Submitted on the opposite strand 101/101
(100 %)
2 diff
(98.1 %id)
AW608977 pnet .a 14843 to 15496 654 to 2       653/665
(98 %)
0 diff
(100 %id)
TI_149306394   .a 14843 to 15566 822 to 103   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 720/946
(76 %)
29 diff
(97.0 %id)
BX454274 placenta .a 14847 to 15562 722 to 1       722/726
(99 %)
26 diff
(96.5 %id)
BM679982 eye, fetal eye .a 14847 to 15566 738 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 720/721
(99 %)
0 diff
(100 %id)
CD724298 eye, lacrimal gland .a 14850 to 15428 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
TI_149286919   .a 14853 to 15566 779 to 72   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 708/986
(71 %)
6 diff
(99.4 %id)
BQ009674 Chondrosarcoma, Left Pubic Bone .a 14858 to 15566 727 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 709/709
(100 %)
0 diff
(100 %id)
AA862732 pooled germ cell tumors .a 14859 to 15024 166 to 1       166/166
(100 %)
0 diff
(100 %id)
BU688322 lung .a 14865 to 15566 720 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 702/702
(100 %)
1 diff
(99.9 %id)
FN069012 breast carcinoma .a 14868 to 14969 1 to 103       103/103
(100 %)
4 diff
(96.2 %id)
FN113513 breast carcinoma .a 14871 to 14971 102 to 1     Submitted on the opposite strand 102/102
(100 %)
3 diff
(97.1 %id)
AA862731 pooled germ cell tumors .a 14880 to 15016 137 to 1       137/137
(100 %)
0 diff
(100 %id)
BM972327 lung .a 14893 to 15566 691 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 673/675
(99 %)
1 diff
(99.9 %id)
FN128907 breast carcinoma .a 14901 to 15004 1 to 104       104/104
(100 %)
2 diff
(98.1 %id)
CA413044 Chondrosarcoma Grade II, Left Pelvis .a 14909 to 15574 684 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 666/666
(100 %)
0 diff
(100 %id)
BQ722886 sympathetic trunk .a 14915 to 15566 1 to 662   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 662/662
(100 %)
17 diff
(97.5 %id)
BU783952 insulinoma, Pancreas .a 14917 to 15566 670 to 21   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 650/650
(100 %)
1 diff
(99.9 %id)
BM678234 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 14945 to 15566 640 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 622/622
(100 %)
0 diff
(100 %id)
BE176812 head_neck .a 14951 to 15122 1 to 171       171/177
(96 %)
8 diff
(95.5 %id)
GD140096   .a 14964 to 15035 1 to 71   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 71/72
(98 %)
4 diff
(94.5 %id)
BU686435 lung, Primary Lung Epithelial Cells .a 14985 to 15566 603 to 22   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 582/582
(100 %)
7 diff
(98.8 %id)
DB324066   .a 14995 to 15566 572 to 1       572/572
(100 %)
0 diff
(100 %id)
FN054874 breast carcinoma .a 15013 to 15112 14 to 113       100/113
(88 %)
6 diff
(94.7 %id)
AU143813 whole embryo, mainly head .a 15021 to 15566 544 to 1       544/548
(99 %)
18 diff
(96.8 %id)
DN917615   .a 15025 to 15521 499 to 4       496/499
(99 %)
0 diff
(100 %id)
AA211783 muscle, skeletal muscle .a 15027 to 15566 564 to 12   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 553/590
(93 %)
32 diff
(94.6 %id)
AU152706   .a 15039 to 15566 556 to 27   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 530/530
(100 %)
17 diff
(96.8 %id)
D62171   .a 15051 to 15257 1 to 208       208/208
(100 %)
5 diff
(97.6 %id)
D61837   .a 15054 to 15342 1 to 289       289/289
(100 %)
2 diff
(99.4 %id)
AU160404   .a 15062 to 15565 503 to 1       503/535
(94 %)
16 diff
(97.1 %id)
BX116614 whole brain .a 15065 to 15566 515 to 15   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 501/501
(100 %)
1 diff
(99.9 %id)
BU786209 insulinoma, Pancreas .a 15081 to 15566 504 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 486/486
(100 %)
0 diff
(100 %id)
AI332836 lung .a 15087 to 15565 479 to 1       479/479
(100 %)
0 diff
(100 %id)
AW613209 2 pooled high-grade transitional celltumors, genitourinary tract .a 15090 to 15566 477 to 1       477/477
(100 %)
0 diff
(100 %id)
BM987250 mixed .a 15103 to 15566 483 to 20   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 464/464
(100 %)
1 diff
(99.8 %id)
BQ024079 placenta .a 15104 to 15566 481 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 463/463
(100 %)
1 diff
(99.8 %id)
BU727964 eye, optic nerve .a 15111 to 15566 475 to 20   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 456/456
(100 %)
0 diff
(100 %id)
AI690447 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 15119 to 15566 448 to 1       448/448
(100 %)
0 diff
(100 %id)
DB564876 hypothalamus .a 15126 to 15566 1 to 441   AAA Submitted on the opposite strand 441/441
(100 %)
4 diff
(99.1 %id)
DB564877 hypothalamus .a 15128 to 15566 1 to 439   AAA Submitted on the opposite strand 439/439
(100 %)
0 diff
(100 %id)
DB553697 hypothalamus .a 15152 to 15566 1 to 417   AAA Submitted on the opposite strand 417/417
(100 %)
3 diff
(99.3 %id)
AI568320 lymph node, lymphoma, follicular mixed small and largecell .a 15154 to 15568 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AA130075 uterus .a 15155 to 15566 411 to 1       411/422
(97 %)
1 diff
(99.8 %id)
AW882956 ovary .a 15160 to 15381 229 to 9       221/242
(91 %)
0 diff
(100 %id)
EC522666 Prostate .a 15160 to 15242 27 to 109       83/109
(76 %)
6 diff
(94.5 %id)
R76699 placenta .a 15160 to 15568 420 to 2       419/428
(97 %)
0 diff
(100 %id)
EC581446 Prostate .a 15170 to 15242 47 to 117       71/117
(60 %)
2 diff
(98.3 %id)
AW297346   .a 15182 to 15566 402 to 18   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 385/385
(100 %)
0 diff
(100 %id)
AW337781 lymph node, lymphoma, follicular mixed small and largecell .a 15208 to 15566 359 to 1       359/359
(100 %)
0 diff
(100 %id)
R61516 whole brain .a 15213 to 15566 370 to 16   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 355/360
(98 %)
1 diff
(99.8 %id)
AW381386 head_neck .a 15219 to 15398 181 to 1       181/190
(95 %)
3 diff
(98.5 %id)
AW381401 head_neck .a 15219 to 15368 150 to 1       150/158
(94 %)
6 diff
(96.3 %id)
T23481   .a 15223 to 15568 349 to 2       348/349
(99 %)
0 diff
(100 %id)
H16598 whole brain .a 15228 to 15566 358 to 14   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 345/350
(98 %)
6 diff
(98.3 %id)
AI076751   .a 15228 to 15566 361 to 23   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 339/339
(100 %)
5 diff
(98.6 %id)
CB268060 adipose .a 15229 to 15555 1 to 327       327/327
(100 %)
1 diff
(99.7 %id)
AA029329 uterus .a 15229 to 15566 343 to 1       343/343
(100 %)
5 diff
(98.6 %id)
AI860067 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 15231 to 15566 366 to 31   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 336/336
(100 %)
2 diff
(99.5 %id)
AI580679 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 15234 to 15568 340 to 5       336/340
(98 %)
0 diff
(100 %id)
AA960940 carcinoid, lung .a 15235 to 15566 334 to 2       333/334
(99 %)
0 diff
(100 %id)
D62007   .a 15243 to 15526 1 to 284       284/284
(100 %)
1 diff
(99.7 %id)
FN102206 breast carcinoma .a 15271 to 15377 1 to 105       105/105
(100 %)
3 diff
(97.2 %id)
AA250974.
matches multiple genes
germinal center B cell .a 15277 to 15568 294 to 3     also hits gene PABPC1L 292/294
(99 %)
0 diff
(100 %id)
R42735 whole brain .a 15279 to 15566 306 to 15   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 292/292
(100 %)
7 diff
(97.7 %id)
AI925777 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 15279 to 15566 303 to 16   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 288/288
(100 %)
0 diff
(100 %id)
AA603423   .a 15283 to 15568 314 to 29       286/314
(91 %)
0 diff
(100 %id)
AI221611 placenta .a 15292 to 15566 276 to 2       275/276
(99 %)
0 diff
(100 %id)
T16483   .a 15303 to 15566 264 to 1       264/267
(98 %)
0 diff
(100 %id)
T16667   .a 15303 to 15566 264 to 1       264/264
(100 %)
0 diff
(100 %id)
AA479203 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 15310 to 15566 257 to 1   fully sequenced,   257/257
(100 %)
0 diff
(100 %id)
R37151 whole brain .a 15313 to 15566 267 to 14   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 254/254
(100 %)
2 diff
(99.3 %id)
FN056576 breast carcinoma .a 15375 to 15493 1 to 118       118/118
(100 %)
1 diff
(99.2 %id)
AW020319.
matches multiple genes
cochlea, ear .a 15385 to 15568 8 to 191   fully sequenced, also hits gene lapabo 184/204
(90 %)
1 diff
(99.6 %id)
D59415 brain .a 15391 to 15566 176 to 1       176/179
(98 %)
2 diff
(98.9 %id)
AA724627 parathyroid gland, parathyroid tumor .a 15413 to 15568 161 to 6       156/162
(96 %)
0 diff
(100 %id)
FN095963 breast carcinoma .a 15475 to 15562 1 to 89       89/89
(100 %)
1 diff
(98.9 %id)
AL137384 testis .b 1 to 4949 1 to 4949 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4949/4949
(100 %)
2 diff
(100.0 %id)
BQ233621 melanotic melanoma, skin .b 4427 to 4966 12 to 551   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 540/551
(98 %)
6 diff
(99.0 %id)
BQ228140 melanotic melanoma, skin .b 4427 to 4966 12 to 551   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 540/551
(98 %)
6 diff
(99.0 %id)
AI499196 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 4459 to 4949 501 to 11   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
DA303398.
matches multiple genes
hippocampus .c 1 to 590 2 to 591   tiling clone, capped also hits gene LOC150568 590/590
(100 %)
0 diff
(100 %id)
DR000307 fetal brain .c 184 to 908 9 to 733   tiling clone,   725/733
(98 %)
12 diff
(98.4 %id)
AK124902 hippocampus .c 876 to 4616 1 to 3741   tiling clone, available from FLJ,   3741/3741
(100 %)
2 diff
(100.0 %id)
AA742788 Ewing's sarcoma .c 4270 to 4598 26 to 354       329/387
(85 %)
6 diff
(98.5 %id)
AA648175 Ewing's sarcoma .c 4271 to 4598 1 to 329       329/348
(94 %)
10 diff
(97.2 %id)
AA745103 Ewing's sarcoma .c 4271 to 4598 1 to 328       328/362
(90 %)
3 diff
(99.2 %id)
FN174672 breast carcinoma .c 4283 to 4392 110 to 1     Submitted on the opposite strand 110/110
(100 %)
0 diff
(100 %id)
FN132998 breast carcinoma .c 4389 to 4454 68 to 3     Submitted on the opposite strand 66/68
(97 %)
0 diff
(100 %id)
BF869710 lung_tumor .c 4699 to 4967 269 to 1   tiling clone, Submitted on the opposite strand 269/269
(100 %)
2 diff
(99.3 %id)
AI688699 colon .c 4890 to 5371 486 to 5       482/486
(99 %)
0 diff
(100 %id)
AI688688 colon .c 4937 to 5368 439 to 8   tiling clone,   432/439
(98 %)
0 diff
(100 %id)
DA194279 amygdala .d 1 to 576 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DA798482 brain .d 162 to 665 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
AL833461 human fetal kidney .d 358 to 5005 1 to 4646   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4646/4646
(100 %)
3 diff
(100.0 %id)
DA122703 cerebellum .d 485 to 1014 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA096071 cerebellum .d 506 to 1070 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
AL701116 human skeletal muscle .d 518 to 1255 1 to 739       737/739
(99 %)
2 diff
(99.8 %id)
DB081564 testis .d 782 to 1354 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
CF122099 lymph .d 810 to 1470 1 to 658       658/658
(100 %)
8 diff
(98.8 %id)
TI_154181558   .d 817 to 1494 77 to 749       673/893
(75 %)
7 diff
(99.3 %id)
CN353327 embryonic stem cells, cell lines H1, H7, andH9 .d 865 to 1604 1 to 740       740/740
(100 %)
0 diff
(100 %id)
BQ335415 marrow .d 882 to 1382 504 to 1       504/504
(100 %)
18 diff
(96.5 %id)
DA329332 hippocampus .d 972 to 1520 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
AW500120 lymph .d 981 to 1541 8 to 568       561/568
(98 %)
6 diff
(99.0 %id)
TI_154154250   .d 981 to 1621 81 to 721       641/643
(99 %)
3 diff
(99.6 %id)
DA212527 brain .d 985 to 1536 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA189357 amygdala .d 987 to 1572 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA854824 placenta .d 1111 to 1685 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
CV569251 cornea, eye .d 1230 to 1776 1 to 547       547/547
(100 %)
0 diff
(100 %id)
W27964 eye, retina .d 1246 to 1661 458 to 35       424/476
(89 %)
9 diff
(98.2 %id)
CN353328 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1258 to 2010 1 to 753       753/753
(100 %)
0 diff
(100 %id)
DA216866 brain .d 1331 to 1877 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
CR936613 seminom .e 1 to 4468 1 to 4468 T1028A tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4468/4469
(99 %)
3 diff
(100.0 %id)
AK309063 hippocampus .e 553 to 4439 1 to 3887       3887/3887
(100 %)
0 diff
(100 %id)
AK025057 colon .e 2467 to 4472 1 to 2006   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2006/2006
(100 %)
0 diff
(100 %id)
AK225886 colon .e 2519 to 4383 1 to 1865       1865/1865
(100 %)
0 diff
(100 %id)
DR423890 eye, Pterygium .e 3826 to 4633 1 to 808   tiling clone,   808/808
(100 %)
2 diff
(99.8 %id)
AK127686   .f 1 to 2944 2 to 2944 E18G R337V L338* tiling clone, available from FLJ,   2944/2944
(100 %)
3 diff
(99.9 %id)
DA221924 brain .g 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
AL706860 human skeletal muscle .g 144 to 882 1 to 739   tiling clone,   739/747
(98 %)
2 diff
(99.8 %id)
W19992 parathyroid gland, parathyroid tumor .g 827 to 1453 1 to 625   tiling clone,   625/630
(99 %)
13 diff
(98.0 %id)
W19978 parathyroid gland, parathyroid tumor .g 828 to 1379 1 to 559       559/559
(100 %)
24 diff
(95.8 %id)
AL137254 testis .g 1296 to 1911 1 to 616   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 616/616
(100 %)
0 diff
(100 %id)
N90405 parathyroid gland, parathyroid tumor .g 1547 to 1911 369 to 1       369/374
(98 %)
8 diff
(97.9 %id)
N90419 parathyroid gland, parathyroid tumor .g 1561 to 1911 352 to 1       352/354
(99 %)
1 diff
(99.8 %id)
AB037792 brain .h 1 to 4096 1 to 4096 exact tiling clone, available from KIAA,   4096/4096
(100 %)
0 diff
(100 %id)
BG621777 placenta .h 2936 to 3399 1 to 464   AAA   464/464
(100 %)
6 diff
(98.8 %id)
DB150087 thymus .h 3219 to 3784 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
CN337939 embryonic stem cells, cell lines H1, H7, andH9 .i 1 to 725 1 to 725 exact tiling clone,   725/725
(100 %)
1 diff
(99.9 %id)
BM148558 leukopheresis .i 591 to 832 1 to 242   tiling clone,   412/413
(99 %)
8 diff
(98.1 %id)
DB154426 thymus .j 1 to 597 2 to 598   tiling clone, capped   597/597
(100 %)
1 diff
(99.9 %id)
DB165831 thymus .j 116 to 717 2 to 603 exact tiling clone, capped   602/602
(100 %)
0 diff
(100 %id)
DR006371 Prostate .k 1 to 740 1 to 741 Q2P tiling clone,   741/741
(100 %)
3 diff
(99.6 %id)
BX497566 Liver .l-u 1 to 647 1 to 647 exact tiling clone,   647/647
(100 %)
2 diff
(99.7 %id)
BG573057 placenta .m 1 to 512 1 to 511   tiling clone,   511/511
(100 %)
3 diff
(99.5 %id)
BF750325 breast_normal .m 425 to 840 426 to 10   tiling clone, Submitted on the opposite strand 417/429
(97 %)
2 diff
(99.6 %id)
BF750330 breast_normal .m 425 to 694 286 to 16     Submitted on the opposite strand 271/289
(93 %)
7 diff
(97.6 %id)
BF985494 placenta_normal .m 503 to 843 344 to 2   tiling clone,   343/344
(99 %)
0 diff
(100 %id)
AL710429 human skeletal muscle .n 1 to 530 1 to 530 exact tiling clone,   530/531
(99 %)
3 diff
(99.5 %id)
BF733759 amnion_normal .o-u 1 to 322 15 to 333   tiling clone,   319/359
(88 %)
7 diff
(98.1 %id)
CA396373 eye, RPE/choroid .o-u 216 to 810 1 to 595 exact tiling clone,   595/595
(100 %)
0 diff
(100 %id)
AL700862 human skeletal muscle .p-u 1 to 528 1 to 529 S71P tiling clone,   529/529
(100 %)
6 diff
(98.9 %id)
AL707236 human skeletal muscle .q-u 1 to 470 1 to 470 exact tiling clone,   470/470
(100 %)
1 diff
(99.8 %id)
T06401   .r-u 1 to 219 219 to 1 E13X tiling clone,   219/219
(100 %)
1 diff
(99.6 %id)
AW270215 normal squamous epithelium, tongue .s-u 1 to 133 133 to 1 G2R tiling clone,   133/134
(99 %)
3 diff
(97.8 %id)
AV661104 corresponding non cancerous liver tissue Gene KIAA1109, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV646569 corresponding non cancerous liver tissue Gene KIAA1109, variant not shown         Submitted on the opposite strand    
DB312446 thalamus Gene KIAA1109, variant not shown              
DA407879 thalamus Gene KIAA1109, variant not shown       capped      
BQ309013 breast Gene KIAA1109, variant not shown         This clone was ignored    
BQ371227 prostate_normal Gene KIAA1109, variant not shown         This clone was ignored    
BQ637603 eye, retina Gene KIAA1109, variant not shown         Suspected internal deletion, this clone was ignored    
AV747601 Pituitary Gene KIAA1109, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
CA392403 eye, RPE/choroid Gene KIAA1109, variant not shown       AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base)    
CA392404 eye, RPE/choroid Gene KIAA1109, variant not shown         Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base)    
H13557 placenta Gene KIAA1109, variant not shown              
H13558 placenta Gene KIAA1109, variant not shown              
DB148060 thymus Gene KIAA1109, variant not shown       capped      
DB157996 thymus Gene KIAA1109, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o-u, .p-u, .q-u, .r-u, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC