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Gene CAMSAP1L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
269 supporting clones for gene CAMSAP1L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM564790 eye, retinoblastoma .a 1 to 669 1 to 677   tiling clone,   677/1307
(51 %)
15 diff
(98.9 %id)
CN289559 embryonic stem cells, DMSO-treated H9 cellline .a 21 to 227 1 to 207   tiling clone,   207/207
(100 %)
1 diff
(99.6 %id)
BM543323 embryonal carcinoma, cell line, testis .a 52 to 657 1 to 608       608/1113
(54 %)
6 diff
(99.5 %id)
BM905735 leiomyosarcoma, uterus .a 63 to 833 1 to 774   tiling clone,   774/1057
(73 %)
33 diff
(96.9 %id)
CN285327 embryonic stem cells, cell lines H1, H7, andH9 .a 432 to 682 1 to 251       251/251
(100 %)
0 diff
(100 %id)
BC125229 PCR rescued clones .a 813 to 5391 1 to 4579 exact tiling clone,   4579/4579
(100 %)
0 diff
(100 %id)
AK126821 amygdala .a 1220 to 3347 1 to 2128   available from FLJ,   2128/2128
(100 %)
2 diff
(100.0 %id)
DA163347 amygdala .a 1221 to 1798 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB477166.
matches multiple genes
hippocampus .a 1422 to 1914 1 to 493     also hits gene kuwerbo 493/496
(99 %)
3 diff
(99.4 %id)
DA521681 brain .a 1436 to 1984 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB302263 amygdala .a 2810 to 3347 538 to 1       538/538
(100 %)
0 diff
(100 %id)
AK095640 brain .b 1 to 2723 1 to 2723   tiling clone, available from FLJ,   2723/2723
(100 %)
2 diff
(100.0 %id)
NM_203459.1   .b 1 to 7349 1 to 7349 exact RefSeq, AAA   7349/7349
(100 %)
0 diff
(100 %id)
DA508044 brain .b 2 to 572 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
CA388618 eye, RPE/choroid .b 321 to 774 1 to 454   tiling clone,   454/454
(100 %)
0 diff
(100 %id)
BU196316 melanotic melanoma, cell line, skin .b 603 to 1205 1 to 604       604/869
(69 %)
11 diff
(98.8 %id)
BQ682944 melanotic melanoma, cell line, skin .b 603 to 1463 1 to 872       872/933
(93 %)
19 diff
(98.0 %id)
BM473721 melanotic melanoma, skin .b 611 to 1444 1 to 840   tiling clone,   840/988
(85 %)
11 diff
(98.9 %id)
AW811766 stomach .b 681 to 1166 1 to 488       488/494
(98 %)
19 diff
(96.2 %id)
DA997128   .b 707 to 1269 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
CN291427 embryonic stem cells, DMSO-treated H9 cellline .b 777 to 1226 1 to 450       450/450
(100 %)
13 diff
(97.2 %id)
DB087289 testis .b 936 to 1485 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA499937 brain .b 1032 to 1601 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
AL550518.
matches multiple genes
placenta, Placenta Cot 25-normalized .b 1038 to 1964 1 to 916     also hits gene SSX2IP 916/922
(99 %)
20 diff
(97.9 %id)
CN422009 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1070 to 1656 1 to 588       588/588
(100 %)
3 diff
(99.5 %id)
EH349441   .b 1128 to 1199 1 to 72       72/72
(100 %)
0 diff
(100 %id)
BX477172   .b 1216 to 1741 1 to 526       526/526
(100 %)
5 diff
(99.1 %id)
AA307313 colon .b 1429 to 1999 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DA787783 brain .b 1480 to 2044 2 to 571   capped   570/570
(100 %)
5 diff
(99.2 %id)
BC056910 Eye, retinoblastoma .b 1551 to 4013 95 to 2557   available from MGC, AAA   2463/2548
(96 %)
6 diff
(99.8 %id)
BU189980 eye, retinoblastoma .b 1551 to 2357 94 to 901   available from MGC,   808/901
(89 %)
6 diff
(99.4 %id)
AA312913 heart .b 1570 to 1932 372 to 10       363/372
(97 %)
0 diff
(100 %id)
AI203434 pooled germ cell tumors .b 1623 to 1926 304 to 1       304/304
(100 %)
0 diff
(100 %id)
BC065508 Skin, melanotic melanoma. .b 1650 to 6082 1 to 4433   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 4433/4433
(100 %)
1 diff
(100.0 %id)
BM458937 melanotic melanoma, skin .b 1650 to 2652 1 to 1010   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1010/1028
(98 %)
14 diff
(98.7 %id)
DA717537   .b 1667 to 2228 2 to 564   capped   563/563
(100 %)
6 diff
(99.0 %id)
BE180412 head_neck .b 1671 to 2053 1 to 382       382/382
(100 %)
6 diff
(98.5 %id)
BX370008 Placenta Cot 25-normalized .b 1702 to 2558 1 to 866       866/895
(96 %)
36 diff
(96.0 %id)
BX390423.
matches multiple genes
placenta, Placenta Cot 25-normalized .b 1706 to 2662 1 to 950     also hits gene SSX2IP 950/950
(100 %)
30 diff
(96.9 %id)
FN069154 breast carcinoma .b 1727 to 1821 95 to 1     Submitted on the opposite strand 95/96
(98 %)
1 diff
(99.0 %id)
DA770182 brain .b 1797 to 2355 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA845699 placenta .b 1909 to 2472 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
FN105636 breast carcinoma .b 1979 to 2072 1 to 89       89/93
(95 %)
8 diff
(91.4 %id)
BC029449 placenta .b 2009 to 2470 1 to 462   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 462/486
(95 %)
2 diff
(99.6 %id)
BG571189 placenta .b 2009 to 2470 1 to 462   available from MGC,   462/490
(94 %)
2 diff
(99.6 %id)
EC450989 Prostate .b 2067 to 2169 103 to 1       103/103
(100 %)
0 diff
(100 %id)
EC466546 Prostate .b 2067 to 2169 103 to 1       103/103
(100 %)
0 diff
(100 %id)
EC509152 Prostate .b 2067 to 2169 105 to 1       105/105
(100 %)
2 diff
(98.1 %id)
EC538237 Prostate .b 2067 to 2169 103 to 1       103/103
(100 %)
0 diff
(100 %id)
DA683298   .b 2100 to 2631 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DB316185 brain .b 2180 to 2723 544 to 1       544/544
(100 %)
0 diff
(100 %id)
BX954605   .b 2270 to 2981 1 to 714       714/714
(100 %)
2 diff
(99.8 %id)
BQ670614 epidermoid carcinoma, cell line, salivary gland .b 2401 to 3297 1 to 903       903/903
(100 %)
13 diff
(98.6 %id)
DW444080 Liver .b 2433 to 2643 17 to 227       211/227
(92 %)
6 diff
(97.4 %id)
DW465300 Liver .b 2433 to 2754 17 to 332       316/358
(88 %)
6 diff
(98.4 %id)
CA397797 eye, RPE/choroid .b 2453 to 3031 1 to 579       579/579
(100 %)
0 diff
(100 %id)
CN422004 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2482 to 2963 1 to 482       482/482
(100 %)
0 diff
(100 %id)
FN148238 breast carcinoma .b 2558 to 2669 1 to 112       112/112
(100 %)
0 diff
(100 %id)
BF671776 muscle (skeletal) .b 2644 to 3353 1 to 696       696/909
(76 %)
22 diff
(97.6 %id)
AA190333   .b 2773 to 3198 1 to 435       435/435
(100 %)
11 diff
(97.5 %id)
BI049549 placenta_normal .b 2779 to 3135 1 to 361       361/362
(99 %)
30 diff
(91.8 %id)
BG112022 Bone, osteosarcoma, cell line .b 2901 to 3594 1 to 690       690/1014
(68 %)
34 diff
(96.7 %id)
DA800239 brain .b 2994 to 3536 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
BF086932 head_neck .b 3029 to 3539 511 to 2       510/511
(99 %)
0 diff
(100 %id)
BF086931 head_neck .b 3089 to 3540 453 to 2       452/453
(99 %)
0 diff
(100 %id)
DW409796 Liver .b 3116 to 3439 12 to 335       324/337
(96 %)
9 diff
(97.4 %id)
DW427107 Liver .b 3116 to 3383 12 to 280       269/280
(96 %)
6 diff
(97.9 %id)
EB361615 eye, lens .b 3205 to 3849 644 to 1       644/644
(100 %)
3 diff
(99.6 %id)
DW410238 Liver .b 3227 to 3545 17 to 335       319/335
(95 %)
6 diff
(98.3 %id)
DW414217 Liver .b 3227 to 3527 17 to 317       301/317
(94 %)
6 diff
(98.2 %id)
AF087998   .b 3346 to 3799 1 to 454   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 454/462
(98 %)
1 diff
(99.8 %id)
N20210 melanocyte .b 3363 to 3797 436 to 1       436/437
(99 %)
1 diff
(99.8 %id)
N29278 melanocyte .b 3377 to 3799 1 to 423       423/424
(99 %)
1 diff
(99.8 %id)
BX371741 Placenta Cot 25-normalized .b 3391 to 4330 935 to 1       935/935
(100 %)
8 diff
(99.2 %id)
AA190785   .b 3409 to 3703 300 to 1       300/414
(72 %)
6 diff
(98.6 %id)
AI288576 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3431 to 3798 368 to 1       368/368
(100 %)
5 diff
(98.7 %id)
BI222239 cervical carcinoma cell line, cervix .b 3479 to 4240 1 to 768       768/768
(100 %)
19 diff
(97.6 %id)
AA932482 Kidney .b 3502 to 3700 205 to 5       201/205
(98 %)
0 diff
(100 %id)
BC011385 Eye, retinoblastoma .b 3536 to 6082 1 to 2547   available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 2547/2547
(100 %)
1 diff
(100.0 %id)
CX781831 human embryonic stem cells .b 3536 to 4384 1 to 847       847/847
(100 %)
2 diff
(99.8 %id)
BE004382 breast_normal .b 3537 to 3914 387 to 10     Submitted on the opposite strand 378/387
(97 %)
0 diff
(100 %id)
DA093004 cerebellum .b 3543 to 4063 2 to 521   capped   520/520
(100 %)
3 diff
(99.5 %id)
BE781604 eye, retinoblastoma .b 3559 to 4269 1 to 716   available from MGC,   716/906
(79 %)
19 diff
(98.0 %id)
CA388609 eye, RPE/choroid .b 3565 to 4029 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
AW008233 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3570 to 4013 444 to 1       444/444
(100 %)
0 diff
(100 %id)
DA215643 brain .b 3662 to 4163 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA881935   .b 3662 to 4217 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA124357 cerebellum .b 3692 to 4231 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DA706888   .b 3696 to 4280 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
BG180018 adenocarcinoma, cell line, Prostate .b 3701 to 4029 1 to 329       329/329
(100 %)
2 diff
(99.4 %id)
BG180254 adenocarcinoma, cell line, Prostate .b 3702 to 4013 1 to 312   AAA   312/312
(100 %)
0 diff
(100 %id)
BG926511 cartilage .b 3706 to 4272 88 to 654       567/584
(97 %)
6 diff
(99.0 %id)
T94057 lung .b 3720 to 4025 1 to 310       310/324
(95 %)
5 diff
(98.5 %id)
BF507449   .b 3724 to 4286 9 to 571     Submitted on the opposite strand 563/571
(98 %)
6 diff
(99.0 %id)
BF515749   .b 3724 to 4245 9 to 530     Submitted on the opposite strand 522/530
(98 %)
10 diff
(98.2 %id)
CN422002 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3771 to 4350 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
CA432804 mixed .b 3802 to 4018 244 to 28   AAA   217/217
(100 %)
0 diff
(100 %id)
BJ991422 hepatoblastoma .b 3916 to 4499 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BE567606 bladder, carcinoma, cell line .b 4048 to 4737 1 to 703       703/812
(86 %)
29 diff
(96.5 %id)
TI_149304699   .b 4091 to 5003 1002 to 102   AAA   901/966
(93 %)
23 diff
(97.7 %id)
CN422005 embryonic stem cells, cell lines H1, H7, andH9 .b 4093 to 4862 1 to 770       770/770
(100 %)
1 diff
(99.9 %id)
AL110158 uterus .b 4097 to 6416 10 to 2329   available from DKFZ, AAA   2320/2320
(100 %)
1 diff
(100.0 %id)
BM462188 eye, retinoblastoma .b 4098 to 5003 927 to 17   AAA Submitted on the opposite strand 909/1064
(85 %)
28 diff
(97.4 %id)
CN422006 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 4180 to 4941 1 to 761       761/761
(100 %)
2 diff
(99.8 %id)
BM971312 lung .b 4270 to 5003 752 to 19   AAA   734/734
(100 %)
1 diff
(99.9 %id)
AA031979 uterus .b 4278 to 4472 1 to 195       195/199
(97 %)
1 diff
(99.5 %id)
DA148802 amygdala .b 4300 to 4866 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
TI_149283825   .b 4319 to 5003 794 to 111   AAA   684/685
(99 %)
2 diff
(99.8 %id)
DA801626 brain .b 4326 to 4795 2 to 471   capped   470/470
(100 %)
0 diff
(100 %id)
BM984225 lung .b 4340 to 5003 682 to 19   AAA   664/664
(100 %)
1 diff
(99.9 %id)
FN098617 breast carcinoma .b 4388 to 4486 99 to 1     Submitted on the opposite strand 99/100
(99 %)
1 diff
(99.0 %id)
BU608601 Human Lung Epithelial cells, lung .b 4393 to 4610 158 to 375   AAA Submitted on the opposite strand 218/384
(56 %)
6 diff
(98.5 %id)
CA314407 Human Lung Epithelial cells, lung .b 4393 to 4610 158 to 375   AAA Submitted on the opposite strand 218/384
(56 %)
6 diff
(98.5 %id)
BE932320 head_neck .b 4404 to 4650 84 to 328       245/330
(74 %)
13 diff
(96.1 %id)
BE932348 head_neck .b 4404 to 4650 84 to 328       245/330
(74 %)
13 diff
(96.1 %id)
CX781770 human embryonic stem cells .b 4441 to 5003 592 to 30   AAA   563/563
(100 %)
1 diff
(99.9 %id)
AA248924   .b 4457 to 4684 1 to 224       224/238
(94 %)
6 diff
(97.5 %id)
AA248925   .b 4457 to 4651 1 to 190       190/200
(95 %)
7 diff
(96.5 %id)
AA248959   .b 4457 to 4721 1 to 257       257/277
(92 %)
9 diff
(96.8 %id)
FN047775 breast carcinoma .b 4468 to 4579 1 to 112       112/114
(98 %)
2 diff
(98.3 %id)
AI080092 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4510 to 5004 500 to 6       495/500
(99 %)
0 diff
(100 %id)
DB172416 kidney, tumor tissue .b 4568 to 5144 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
N94708 multiple sclerosis lesions .b 4581 to 5024 1 to 445       445/445
(100 %)
3 diff
(99.4 %id)
N95701 multiple sclerosis lesions .b 4582 to 5018 1 to 439       439/441
(99 %)
5 diff
(98.9 %id)
BX477173   .b 4593 to 4981 389 to 1       389/389
(100 %)
12 diff
(97.0 %id)
BG623319 placenta .b 4599 to 5302 1 to 710       710/776
(91 %)
7 diff
(99.1 %id)
DA902498   .b 4643 to 5212 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AA031980 uterus .b 4672 to 5003 332 to 1       332/333
(99 %)
1 diff
(99.7 %id)
DA144040 amygdala .b 4689 to 5237 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA569917 whole embryo, mainly head .b 4720 to 5576 2 to 857   capped   856/861
(99 %)
6 diff
(99.4 %id)
DA037587   .b 4736 to 5287 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BF084065 colon .b 4767 to 5091 14 to 338       325/345
(94 %)
2 diff
(99.5 %id)
DA395442 thalamus .b 4815 to 5389 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BG716547 brain, hypothalamus .b 4891 to 5660 1 to 770   available from MGC,   770/770
(100 %)
6 diff
(99.3 %id)
BC045721 Brain, hypothalamus .b 4895 to 7349 1 to 2456   tiling clone, available from MGC, AAA   2456/2456
(100 %)
1 diff
(100.0 %id)
DB488829.
matches multiple genes
hypothalamus .b 4896 to 5342 1 to 447     also hits gene kuwerbo 447/447
(100 %)
0 diff
(100 %id)
DB488858 hypothalamus .b 4896 to 5343 1 to 450       450/450
(100 %)
3 diff
(99.4 %id)
DB498852.
matches multiple genes
hypothalamus .b 4896 to 5398 1 to 503     also hits gene kuwerbo 503/503
(100 %)
0 diff
(100 %id)
CB146257 Liver .b 4920 to 5389 1 to 471       471/471
(100 %)
3 diff
(99.4 %id)
BF038903 adenocarcinoma, ovary .b 5174 to 5909 1 to 719       719/900
(79 %)
21 diff
(97.7 %id)
BJ991845 hepatoblastoma .b 5182 to 5630 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
AK026348 human small intestine .b 5268 to 6415 1 to 1148   available from FLJ, AAA   1148/1148
(100 %)
3 diff
(99.8 %id)
DA164784 amygdala .b 5330 to 5846 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
BX487466   .b 5358 to 5816 21 to 480       460/480
(95 %)
6 diff
(98.8 %id)
CB994839 placenta, pre-eclamptic placenta .b 5364 to 6112 26 to 778       753/803
(93 %)
7 diff
(99.2 %id)
CK820096 Islets of Langerhans, Pancreas .b 5395 to 5994 1 to 600       600/600
(100 %)
0 diff
(100 %id)
BM354157 Islets of Langerhans, Pancreas .b 5411 to 5978 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BM263202 Islets of Langerhans, Pancreas .b 5411 to 5942 1 to 532       532/532
(100 %)
0 diff
(100 %id)
BJ991423 hepatoblastoma .b 5526 to 6065 540 to 1       540/540
(100 %)
0 diff
(100 %id)
BQ229120 melanotic melanoma, skin .b 5539 to 6372 1 to 845       845/888
(95 %)
31 diff
(96.6 %id)
BG286277 bladder, transitional cell papilloma, cell line .b 5569 to 6244 1 to 675       675/1012
(66 %)
19 diff
(98.2 %id)
AI620733 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 5620 to 6082 463 to 1       463/463
(100 %)
0 diff
(100 %id)
CN422001 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 5670 to 6368 1 to 698       698/698
(100 %)
1 diff
(99.9 %id)
BG571978 placenta .b 5674 to 6297 1 to 622       622/622
(100 %)
3 diff
(99.6 %id)
CN422007 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 5717 to 6231 1 to 516       516/525
(98 %)
5 diff
(99.1 %id)
R24633 placenta .b 5753 to 5851 1 to 99       99/100
(99 %)
4 diff
(96.0 %id)
BG027106 Bone, osteosarcoma, cell line .b 5753 to 6444 1 to 687       687/948
(72 %)
13 diff
(98.7 %id)
R23791 placenta .b 5759 to 6138 1 to 392       392/400
(98 %)
19 diff
(95.3 %id)
CD679607 eye, Trabecular meshwork .b 5843 to 6474 1 to 632       632/632
(100 %)
2 diff
(99.7 %id)
BG622429 placenta .b 5857 to 6459 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
N63409 multiple sclerosis lesions .b 5876 to 6409 540 to 1       540/543
(99 %)
15 diff
(97.3 %id)
N63447 multiple sclerosis lesions .b 5876 to 6409 538 to 1       538/540
(99 %)
15 diff
(97.3 %id)
BU188030 testis .b 5897 to 6711 1 to 815       815/819
(99 %)
7 diff
(99.2 %id)
BG570502 lung .b 5925 to 6641 1 to 711       711/712
(99 %)
10 diff
(98.6 %id)
BG570176 lung .b 5932 to 6646 1 to 722       722/723
(99 %)
12 diff
(98.4 %id)
BE702008 nervous_normal .b 5966 to 6355 21 to 412       392/413
(94 %)
6 diff
(98.6 %id)
AW902081 nervous_normal .b 5976 to 6386 413 to 1       413/413
(100 %)
3 diff
(99.3 %id)
BF364110 nervous_normal .b 5976 to 6269 1 to 295       295/295
(100 %)
3 diff
(99.0 %id)
BG926846 cartilage .b 5976 to 6569 86 to 680       595/614
(96 %)
3 diff
(99.6 %id)
BI258407 cervical carcinoma cell line, cervix .b 5985 to 6638 1 to 672       672/676
(99 %)
25 diff
(96.4 %id)
H14390 whole brain .b 5994 to 6465 1 to 475       475/477
(99 %)
17 diff
(96.5 %id)
BM786794 stomach .b 6005 to 6706 1 to 702       702/702
(100 %)
0 diff
(100 %id)
BM468500 leiomyosarcoma, uterus .b 6008 to 6415 1 to 408   AAA   408/408
(100 %)
1 diff
(99.8 %id)
BQ226555 melanotic melanoma, skin .b 6008 to 6710 1 to 710       710/895
(79 %)
13 diff
(98.6 %id)
CN422003 embryonic stem cells, DMSO-treated H9 cellline .b 6009 to 6274 1 to 266       266/266
(100 %)
9 diff
(96.7 %id)
BG623295 placenta .b 6013 to 6741 1 to 722       722/723
(99 %)
13 diff
(98.3 %id)
CN422000 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 6024 to 6496 1 to 473       473/473
(100 %)
4 diff
(99.2 %id)
BE897863 melanotic melanoma, skin .b 6025 to 6751 1 to 725       725/909
(79 %)
27 diff
(97.1 %id)
BE738144 brain, glioblastoma .b 6036 to 6610 1 to 563       563/813
(69 %)
19 diff
(97.7 %id)
BU155796 melanotic melanoma, skin .b 6047 to 6892 1 to 848       848/852
(99 %)
3 diff
(99.7 %id)
BG485524 lung .b 6052 to 6856 1 to 807       807/861
(93 %)
30 diff
(96.6 %id)
BF698816 brain, primitive neuroectoderm .b 6058 to 6690 1 to 617       617/836
(73 %)
17 diff
(98.0 %id)
BF907941 uterus_tumor .b 6084 to 6419 9 to 340       332/343
(96 %)
6 diff
(98.3 %id)
BG291816 bladder, transitional cell papilloma, cell line .b 6096 to 6833 1 to 746       746/748
(99 %)
16 diff
(97.9 %id)
BE086650 breast .b 6099 to 6426 1 to 337       337/337
(100 %)
13 diff
(96.2 %id)
BM353984 Pancreas, Purified pancreatic islet .b 6117 to 6667 1 to 551       551/551
(100 %)
6 diff
(99.0 %id)
BF126133 Liver .b 6170 to 6855 1 to 674       674/736
(91 %)
25 diff
(96.7 %id)
AW890135 nervous_tumor .b 6188 to 6662 4 to 479       476/479
(99 %)
9 diff
(98.2 %id)
AW899446 nervous_normal .b 6188 to 6662 4 to 479       476/479
(99 %)
9 diff
(98.2 %id)
TI_151773107   .b 6231 to 6901 109 to 785       677/1113
(60 %)
13 diff
(98.9 %id)
FN141913 breast carcinoma .b 6280 to 6375 98 to 1     Submitted on the opposite strand 98/98
(100 %)
4 diff
(96.0 %id)
EC470116 Prostate .b 6293 to 6389 1 to 97       97/97
(100 %)
0 diff
(100 %id)
H43289 breast .b 6371 to 6743 1 to 381       381/382
(99 %)
16 diff
(95.9 %id)
R77531 placenta .b 6374 to 6754 1 to 386       386/408
(94 %)
7 diff
(98.3 %id)
BX099345 placenta .b 6375 to 7045 1 to 671       671/671
(100 %)
0 diff
(100 %id)
CB266155 adipose .b 6398 to 7034 1 to 637       637/637
(100 %)
0 diff
(100 %id)
AW958459   .b 6404 to 7049 1 to 652       652/652
(100 %)
22 diff
(96.7 %id)
AA355082   .b 6407 to 6681 5 to 281       277/281
(98 %)
6 diff
(97.9 %id)
TI_149278308   .b 6432 to 7349 978 to 83   AAA   896/1050
(85 %)
22 diff
(98.0 %id)
BE738711 brain, glioblastoma .b 6434 to 7281 842 to 1       842/1001
(84 %)
19 diff
(98.2 %id)
R27901 placenta .b 6477 to 6864 1 to 394       394/413
(95 %)
25 diff
(94.0 %id)
BX415129 thymus .b 6493 to 7323 828 to 1       828/828
(100 %)
13 diff
(98.5 %id)
CB124482 Liver .b 6530 to 7149 1 to 620       620/620
(100 %)
0 diff
(100 %id)
N54716 multiple sclerosis lesions .b 6558 to 6713 41 to 195       155/207
(74 %)
3 diff
(98.6 %id)
DA727547   .b 6587 to 7049 2 to 464   capped   463/475
(97 %)
5 diff
(99.0 %id)
BU678391 lung .b 6606 to 7349 761 to 19   AAA   743/743
(100 %)
2 diff
(99.8 %id)
R80684 placenta .b 6664 to 7151 1 to 490       490/491
(99 %)
11 diff
(97.8 %id)
AW993793 breast_normal .b 6674 to 7247 9 to 578       570/578
(98 %)
6 diff
(99.0 %id)
BI089885 cervix .b 6675 to 7349 1 to 672   AAA   672/672
(100 %)
4 diff
(99.5 %id)
AA036816.
matches multiple genes
uterus .b 6716 to 7160 1 to 452     also hits gene BCCIP 452/452
(100 %)
7 diff
(98.5 %id)
AA146962 uterus .b 6720 to 7343 1 to 626   fully sequenced,   626/626
(100 %)
17 diff
(97.3 %id)
AA243885 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 6720 to 7139 1 to 420       420/420
(100 %)
0 diff
(100 %id)
BQ003234 Chondrosarcoma, Left Pelvis .b 6726 to 7349 642 to 19   AAA   624/624
(100 %)
2 diff
(99.7 %id)
BU619402 cell lines, Chondrosarcoma .b 6728 to 7349 640 to 19   tiling clone, AAA   622/622
(100 %)
0 diff
(100 %id)
BQ023781 placenta .b 6773 to 7349 595 to 19   AAA   577/577
(100 %)
0 diff
(100 %id)
BM669806 eye, fetal eyes .b 6778 to 7349 590 to 19   AAA   572/572
(100 %)
0 diff
(100 %id)
DB356628 whole embryo, mainly head .b 6779 to 7349 571 to 1       571/571
(100 %)
2 diff
(99.7 %id)
BM273188 Islets of Langerhans, Pancreas .b 6779 to 7355 578 to 2       577/578
(99 %)
0 diff
(100 %id)
AW023566 cochlea, ear .b 6797 to 7141 8 to 352       345/352
(98 %)
6 diff
(98.3 %id)
DA106178 cerebellum .b 6801 to 7346 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BE086717 breast .b 6813 to 6991 1 to 180       180/181
(99 %)
11 diff
(94.0 %id)
BM353698 Pancreas, Purified pancreatic islet .b 6813 to 7354 556 to 15   AAA   542/542
(100 %)
9 diff
(98.4 %id)
N50061 multiple sclerosis lesions .b 6849 to 7349 507 to 1       507/511
(99 %)
25 diff
(95.2 %id)
BF109529 brain, glioblastoma (pooled) .b 6850 to 7352 506 to 3       504/506
(99 %)
0 diff
(100 %id)
AA036772.
matches multiple genes
uterus .b 6863 to 7349 494 to 1     also hits gene hetare 494/499
(98 %)
7 diff
(98.6 %id)
AA581694 Kidney, kidney tumor .b 6906 to 7349 455 to 12   AAA   444/444
(100 %)
0 diff
(100 %id)
AI536862 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 6907 to 7349 454 to 14   AAA   441/441
(100 %)
2 diff
(99.6 %id)
AI972439 Prostate .b 6916 to 7354 461 to 23   AAA   439/439
(100 %)
18 diff
(95.9 %id)
R77440 placenta .b 6931 to 7337 412 to 1       412/413
(99 %)
10 diff
(97.6 %id)
AI623214 pooled germ cell tumors .b 6933 to 7350 460 to 43   AAA   418/418
(100 %)
33 diff
(92.2 %id)
H14341 whole brain .b 6935 to 7349 434 to 11   AAA   424/426
(99 %)
9 diff
(97.9 %id)
AA665738   .b 6951 to 7349 398 to 1       398/398
(100 %)
2 diff
(99.5 %id)
AI361084 brain, glioblastoma (pooled) .b 6961 to 7349 413 to 25   AAA   389/389
(100 %)
1 diff
(99.8 %id)
BF222147 Prostate .b 6961 to 7352 397 to 6       392/397
(98 %)
0 diff
(100 %id)
AI971068 Prostate .b 6963 to 7354 412 to 21   AAA   392/392
(100 %)
13 diff
(96.7 %id)
AA992387   .b 6968 to 7349 397 to 16   AAA   382/382
(100 %)
0 diff
(100 %id)
AA687882 normal prostate, Prostate .b 6969 to 7349 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AI567361 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 6970 to 7349 404 to 25   AAA   380/380
(100 %)
1 diff
(99.8 %id)
CR738028 colon, moderately-differentiated adenocarcinoma .b 6977 to 7349 387 to 15   AAA   373/373
(100 %)
0 diff
(100 %id)
AA625716   .b 6985 to 7354 385 to 16   tiling clone, AAA   370/370
(100 %)
1 diff
(99.8 %id)
AI359428 brain, glioblastoma (pooled) .b 7005 to 7349 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
R27809 placenta .b 7041 to 7349 315 to 1       315/369
(85 %)
14 diff
(96.3 %id)
AA602979 normal prostate, Prostate .b 7046 to 7350 305 to 1       305/305
(100 %)
0 diff
(100 %id)
AI419636 brain, glioblastoma (pooled) .b 7092 to 7349 258 to 1       258/258
(100 %)
3 diff
(98.9 %id)
R24528 placenta .b 7103 to 7352 251 to 2       250/252
(99 %)
0 diff
(100 %id)
AI217785 pooled .b 7128 to 7349 250 to 29   AAA   222/222
(100 %)
9 diff
(96.0 %id)
C14361   .b 7139 to 7349 1 to 211   fully sequenced,   211/211
(100 %)
0 diff
(100 %id)
R23739 placenta .b 7141 to 7346 212 to 6       207/212
(97 %)
0 diff
(100 %id)
AA070592   .b 7152 to 7344 1 to 193       193/193
(100 %)
0 diff
(100 %id)
AI869386 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 7156 to 7349 208 to 15   AAA   194/194
(100 %)
1 diff
(99.5 %id)
AA146963 uterus .b 7166 to 7348 198 to 15   fully sequenced, AAA   184/184
(100 %)
0 diff
(100 %id)
C14360   .b 7223 to 7349 127 to 1   fully sequenced,   127/127
(100 %)
0 diff
(100 %id)
BC125230 PCR rescued clones .c 1 to 4498 1 to 4498 exact tiling clone,   4498/4498
(100 %)
1 diff
(100.0 %id)
DB041582 testis .c 987 to 1543 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AW803733 uterus .c 1043 to 1305 24 to 286       263/286
(91 %)
9 diff
(96.9 %id)
DB337889 testis .c 2904 to 3439 537 to 1       537/537
(100 %)
1 diff
(99.9 %id)
DB090311 testis .d 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
AB029001 brain .d 402 to 7141 1 to 6740 E18K tiling clone, available from KIAA,   6740/6740
(100 %)
1 diff
(100.0 %id)
N52861 multiple sclerosis lesions .d 6738 to 7196 465 to 1   tiling clone,   465/466
(99 %)
6 diff
(98.8 %id)
CN422008 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e-u 1 to 498 1 to 498   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
BU177425 melanotic melanoma, skin .e-u 58 to 660 24 to 645       622/962
(64 %)
24 diff
(97.6 %id)
BU631888 cell lines, Chondrosarcoma .e-u 109 to 660 562 to 11   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 552/562
(98 %)
0 diff
(100 %id)
AW593213 pooled .e-u 176 to 653 480 to 3       478/480
(99 %)
0 diff
(100 %id)
BQ024250 placenta .e-u 187 to 660 487 to 14   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 474/495
(95 %)
0 diff
(100 %id)
AA909582 pooled .e-u 224 to 653 432 to 3       430/432
(99 %)
0 diff
(100 %id)
AW237070 pooled germ cell tumors .e-u 266 to 658 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
EL945702 eyeball .e-u 273 to 617 47 to 391       345/391
(88 %)
6 diff
(98.5 %id)
BQ184064 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e-u 274 to 660 397 to 11   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 387/422
(91 %)
0 diff
(100 %id)
TI_151809215   .e-u 274 to 660 95 to 481   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 387/1054
(36 %)
7 diff
(99.4 %id)
AI760316 Kidney .e-u 327 to 657 331 to 1       331/331
(100 %)
2 diff
(99.4 %id)
AI912919 Kidney .e-u 378 to 653 276 to 1       276/276
(100 %)
0 diff
(100 %id)
BF434784 Kidney .e-u 378 to 653 276 to 1       276/276
(100 %)
0 diff
(100 %id)
AI340271 pooled germ cell tumors .e-u 423 to 889 468 to 1   tiling clone,   468/468
(100 %)
6 diff
(98.8 %id)
AW196968 pooled germ cell tumors .e-u 435 to 889 454 to 1       454/454
(100 %)
8 diff
(98.3 %id)
BQ025895 placenta .e-u 456 to 660 221 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 206/221
(93 %)
0 diff
(100 %id)
BE502488 pooled germ cell tumors .e-u 497 to 889 391 to 1       391/391
(100 %)
3 diff
(99.3 %id)
BE501163 pooled germ cell tumors .e-u 688 to 889 201 to 1       201/201
(100 %)
1 diff
(99.6 %id)
DA226946 brain .f 1 to 564 2 to 567   tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
AW002480 pooled germ cell tumors .f 301 to 672 372 to 1       372/372
(100 %)
1 diff
(99.8 %id)
AW025927 pooled germ cell tumors .f 301 to 672 372 to 1   tiling clone,   372/372
(100 %)
0 diff
(100 %id)
AI962802 pooled germ cell tumors .f 302 to 672 371 to 1       371/371
(100 %)
5 diff
(98.7 %id)
AA496095   .f 645 to 972 1 to 328   tiling clone, fully sequenced,   328/328
(100 %)
0 diff
(100 %id)
AA406094   .f 911 to 1360 452 to 3   tiling clone, fully sequenced,   450/452
(99 %)
0 diff
(100 %id)
AI824531 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f 994 to 1363 372 to 3   tiling clone,   370/372
(99 %)
0 diff
(100 %id)
AL699806 human skeletal muscle .g-u 1 to 628 1 to 628 exact tiling clone,   628/628
(100 %)
0 diff
(100 %id)
AW006503 colon .h-u 1 to 517 518 to 2 I22T tiling clone,   517/518
(99 %)
0 diff
(100 %id)
BX501787 Liver .i-u 1 to 325 12 to 340 S2C M3Y S4R Y5L V6Y ... tiling clone,   334/340
(98 %)
8 diff
(97.7 %id)
AV708804 adrenal gland Gene CAMSAP1L1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AL574354 placenta, Placenta Cot 25-normalized Gene CAMSAP1L1, variant not shown         This clone was ignored    
H72799 liver and spleen Gene CAMSAP1L1, variant not shown         This clone was ignored    
H72800 liver and spleen Gene CAMSAP1L1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC