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Gene TBC1D30TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene TBC1D30 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC377016 brain .a 1 to 544 1 to 545   tiling clone,   545/545
(100 %)
2 diff
(99.7 %id)
DC322449 brain .a 48 to 610 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DA097471 cerebellum .a 60 to 625 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA291032 hippocampus .a 64 to 641 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA768597 brain .a 64 to 617 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA491950 brain .a 80 to 558 2 to 481   capped   480/480
(100 %)
1 diff
(99.8 %id)
DA609491   .a 97 to 642 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA797125 brain .a 97 to 664 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA094234 cerebellum .a 99 to 651 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA239513 brain .a 99 to 678 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA243560 brain .a 99 to 669 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA320425 hippocampus .a 99 to 653 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA331194 hippocampus .a 99 to 680 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA369103 subthalamic nucleus .a 99 to 660 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA522371 brain .a 99 to 667 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA723402   .a 99 to 666 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB169407 kidney, tumor tissue .a 101 to 682 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
AB449914 brain .a 309 to 2594 1 to 2286 V589I tiling clone,   2286/2286
(100 %)
2 diff
(100.0 %id)
DA247031 brain .a 398 to 979 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
AB023201 brain .b 1 to 4704 1 to 4701 exact tiling clone, available from KIAA,   4701/4701
(100 %)
3 diff
(100.0 %id)
BG206638   .b 937 to 1729 1 to 792       792/793
(99 %)
38 diff
(95.3 %id)
DA226348 brain .b 954 to 1610 2 to 658   capped   657/657
(100 %)
0 diff
(100 %id)
AW862491 colon .b 1099 to 1680 12 to 591       580/591
(98 %)
9 diff
(98.5 %id)
BG824199 adenocarcinoma cell line, colon .b 1102 to 1722 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
DA238024 brain .b 1230 to 1809 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA417030 thalamus .b 1297 to 1864 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA394529 thalamus .b 1506 to 1997 2 to 491   capped   490/490
(100 %)
4 diff
(99.2 %id)
BU539358 adenocarcinoma, cell line, breast .b 1507 to 2389 1 to 885       885/885
(100 %)
7 diff
(99.3 %id)
FN112741 breast carcinoma .b 1512 to 1621 106 to 1     Submitted on the opposite strand 106/106
(100 %)
5 diff
(95.3 %id)
DA784330 brain .b 1626 to 2205 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BF001669 colon, colon tumor, RER+ .b 1683 to 2434 753 to 1       753/753
(100 %)
21 diff
(97.3 %id)
BF769890 epid_tumor .b 1702 to 2152 454 to 3     Submitted on the opposite strand 452/455
(99 %)
0 diff
(100 %id)
AW629209 pooled .b 1915 to 2437 527 to 5       523/527
(99 %)
0 diff
(100 %id)
AW080826 colon, moderately differentiated adenocarcinoma .b 1989 to 2433 473 to 27   AAA   447/447
(100 %)
15 diff
(96.7 %id)
DA489857 brain .b 2015 to 2594 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AW104866 pooled .b 2038 to 2433 399 to 4       396/399
(99 %)
0 diff
(100 %id)
BI115757 lung, small cell carcinoma .b 2102 to 2728 1 to 630       630/978
(64 %)
17 diff
(98.3 %id)
BM987772 mixed .b 2147 to 2433 305 to 19   AAA   287/287
(100 %)
0 diff
(100 %id)
AA336335 endometrium .b 2165 to 2391 1 to 227       227/227
(100 %)
1 diff
(99.6 %id)
DA489866 brain .b 2179 to 2746 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA510601 brain .b 2180 to 2739 2 to 562   tiling clone, capped   561/561
(100 %)
2 diff
(99.7 %id)
AW151449 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2229 to 2427 211 to 13   AAA   199/199
(100 %)
0 diff
(100 %id)
DA792701 brain .b 2260 to 2887 2 to 629   tiling clone, capped   628/628
(100 %)
2 diff
(99.7 %id)
DA065217 cerebellum .b 2275 to 2839 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA795482 brain .b 2779 to 3275 2 to 498   capped   497/497
(100 %)
3 diff
(99.4 %id)
DA785177 brain .b 2849 to 3435 2 to 593   capped   592/592
(100 %)
9 diff
(98.5 %id)
Z42675 brain, total brain .b 3126 to 3350 1 to 225       225/225
(100 %)
1 diff
(99.6 %id)
F12415 brain, total brain .b 3126 to 3484 1 to 358       358/358
(100 %)
1 diff
(99.8 %id)
DB168226 kidney, tumor tissue .b 3147 to 3715 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
T74277 whole brain .b 3154 to 3502 1 to 350       350/350
(100 %)
7 diff
(98.0 %id)
T68970 Liver .b 3292 to 3635 1 to 355       355/365
(97 %)
17 diff
(95.4 %id)
R12972 whole brain .b 3352 to 3638 1 to 294       294/295
(99 %)
9 diff
(97.0 %id)
R56199 whole brain .b 3396 to 3860 1 to 468       468/468
(100 %)
5 diff
(99.0 %id)
H14683 whole brain .b 3397 to 3875 1 to 481       481/482
(99 %)
9 diff
(98.2 %id)
AW898750 nervous_normal .b 3462 to 3801 6 to 345       340/345
(98 %)
6 diff
(98.3 %id)
AI686422 Prostate .b 3514 to 3880 367 to 1       367/367
(100 %)
0 diff
(100 %id)
CB136408 Liver .b 3716 to 4311 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
BX118722 whole brain .b 3804 to 4345 1 to 542   tiling clone,   542/542
(100 %)
1 diff
(99.9 %id)
H08935 whole brain .b 3844 to 4209 1 to 370       370/448
(82 %)
5 diff
(98.9 %id)
R60625 whole brain .b 3847 to 4182 1 to 337       337/337
(100 %)
3 diff
(99.2 %id)
BU607804 Human Lung Epithelial cells, lung .b 4290 to 5032 761 to 19   tiling clone, AAA   743/743
(100 %)
1 diff
(99.9 %id)
DA778847 brain .b 4378 to 4960 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
R56087 whole brain .b 4419 to 4722 343 to 38   AAA   306/342
(89 %)
11 diff
(96.8 %id)
BU753449 placenta .b 4452 to 5032 598 to 18   AAA   581/581
(100 %)
0 diff
(100 %id)
R60571 whole brain .b 4615 to 5032 437 to 14   AAA   424/507
(83 %)
17 diff
(96.7 %id)
T68896 Liver .b 4658 to 5032 382 to 1       382/392
(97 %)
6 diff
(98.5 %id)
DA747111   .b 4665 to 5227 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
F10032 brain, total brain .b 4667 to 5032 366 to 1       366/366
(100 %)
0 diff
(100 %id)
R40169 whole brain .b 4742 to 5032 317 to 20   AAA   298/344
(86 %)
8 diff
(97.7 %id)
H08851 whole brain .b 4757 to 5032 291 to 16   AAA   276/276
(100 %)
1 diff
(99.7 %id)
Z38841 brain, total brain .b 4760 to 5032 273 to 1       273/273
(100 %)
0 diff
(100 %id)
DN994603 brain, whole brain .b 4783 to 5391 9 to 617       609/617
(98 %)
6 diff
(99.1 %id)
AA971626 carcinoid, lung .b 4816 to 5230 26 to 440     Submitted on the opposite strand 415/440
(94 %)
6 diff
(98.7 %id)
AL050074 Kidney .b 5019 to 7220 1 to 2201   tiling clone, available from DKFZ, AAA   2201/2201
(100 %)
7 diff
(99.7 %id)
BE747044 adenocarcinoma cell line, ovary .c 1 to 231 1 to 230   tiling clone,   230/230
(100 %)
1 diff
(99.6 %id)
AW664413 2 pooled high-grade transitional celltumors, genitourinary tract .c 193 to 703 1 to 511   tiling clone, Submitted on the opposite strand 511/511
(100 %)
1 diff
(99.9 %id)
AW016064   .c 195 to 501 1 to 308     Submitted on the opposite strand 308/308
(100 %)
2 diff
(99.4 %id)
DN831215 pooled .c 208 to 354 1 to 147       147/183
(80 %)
4 diff
(97.9 %id)
DC374239 brain .d 1 to 581 2 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BM310544 Pancreas, Purified pancreatic islet .e 1 to 596 1 to 596 exact tiling clone, Submitted on the opposite strand 596/596
(100 %)
0 diff
(100 %id)
CK825272 Pancreas, Purified pancreatic islet .e 44 to 312 1 to 269   fully sequenced,   269/269
(100 %)
0 diff
(100 %id)
CK825271 Pancreas, Purified pancreatic islet .e 261 to 704 456 to 13   tiling clone, fully sequenced, AAA   444/444
(100 %)
0 diff
(100 %id)
BE466768 pooled germ cell tumors .f-u 1 to 322 322 to 1   tiling clone,   322/322
(100 %)
0 diff
(100 %id)
Z43424 brain, total brain .f-u 638 to 991 1 to 354   tiling clone,   354/354
(100 %)
1 diff
(99.8 %id)
H23048 whole brain .f-u 639 to 1018 1 to 382   tiling clone,   382/512
(74 %)
6 diff
(98.9 %id)
H23034 whole brain .f-u 639 to 1065 1 to 443   tiling clone,   443/444
(99 %)
21 diff
(95.3 %id)
H23367 whole brain .f-u 639 to 1070 1 to 437   tiling clone,   437/458
(95 %)
13 diff
(97.2 %id)
DN999257   .f-u 1164 to 1787 8 to 631   tiling clone,   624/631
(98 %)
6 diff
(99.1 %id)
BX117473 whole brain .f-u 1644 to 2116 488 to 15   tiling clone, AAA   474/474
(100 %)
1 diff
(99.8 %id)
H24328 whole brain .f-u 1694 to 2116 430 to 4       427/444
(96 %)
0 diff
(100 %id)
H23256 whole brain .f-u 1700 to 2116 438 to 13   AAA   426/431
(98 %)
12 diff
(97.3 %id)
H24314 whole brain .f-u 1723 to 2116 413 to 13   AAA   401/403
(99 %)
10 diff
(97.6 %id)
F02811 brain, total brain .f-u 1783 to 2116 334 to 1       334/334
(100 %)
0 diff
(100 %id)
BM720541 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f-u 1868 to 2314 1 to 447   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 447/447
(100 %)
0 diff
(100 %id)
DA006895   .g 1 to 586 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DN989465 brain, whole brain .g 114 to 720 1 to 608 V42X V43C L44V K45E R46A ... tiling clone,   608/608
(100 %)
6 diff
(99.1 %id)
AK055404 brain Gene TBC1D30, variant not shown       available from FLJ, This clone was ignored    
AK299508 brain Gene TBC1D30, variant not shown         Suspected internal deletion, this clone was ignored    
DB300115 cerebellum Gene TBC1D30, variant not shown         This clone was ignored    
DA114738 cerebellum Gene TBC1D30, variant not shown         This clone was ignored    
DB316716 brain Gene TBC1D30, variant not shown         This clone was ignored    
DA514671 brain Gene TBC1D30, variant not shown       capped This clone was ignored    
AA858183 adenocarcinoma, colon Gene TBC1D30, variant not shown       AAA      
AI458698 carcinoid, lung Gene TBC1D30, variant not shown              
AI802074 carcinoid, lung Gene TBC1D30, variant not shown              
AW134976   Gene TBC1D30, variant not shown       AAA      
BE042973 carcinoid, lung Gene TBC1D30, variant not shown              
DA787297 brain Gene TBC1D30, variant not shown       capped      
DB221768 trachea Gene TBC1D30, variant not shown       capped      
DB349446 trachea Gene TBC1D30, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC