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Gene RRP12andRPL34P20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
445 supporting clones for gene RRP12andRPL34P20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC424793   .a 1 to 834 1 to 830   tiling clone,   830/837
(99 %)
15 diff
(98.3 %id)
NM_015179.3   .a 165 to 4589 1 to 4425 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4425/4425
(100 %)
0 diff
(100 %id)
DC417040 trachea .a 165 to 716 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
DC400603 testis .a 173 to 705 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
DC400985 testis .a 175 to 702 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
DC334797 hippocampus .a 177 to 731 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC404317 testis .a 178 to 746 1 to 569       569/571
(99 %)
3 diff
(99.5 %id)
DB293699   .a 187 to 951 2 to 769   capped   768/810
(94 %)
17 diff
(98.0 %id)
DC325064 brain .a 189 to 778 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
DC348159 tongue, tumor tissue .a 189 to 753 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
DC402581 testis .a 189 to 739 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
DC416960 trachea .a 189 to 745 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DC377626 brain .a 190 to 755 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
BM147278 leukopheresis .a 191 to 631 1 to 441       441/441
(100 %)
3 diff
(99.4 %id)
AK022496   .a 194 to 4589 1 to 4396 T190A Q549R R1281Q tiling clone, available from FLJ,   4396/4396
(100 %)
10 diff
(99.8 %id)
AU122811   .a 195 to 940 2 to 754   capped   753/820
(91 %)
22 diff
(97.4 %id)
DA853321 placenta .a 195 to 767 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DA187938 amygdala .a 196 to 753 2 to 560   capped   559/559
(100 %)
6 diff
(99.0 %id)
DA227012 brain .a 196 to 731 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA291242 hippocampus .a 196 to 734 2 to 541   capped   540/540
(100 %)
4 diff
(99.3 %id)
DA321579 hippocampus .a 196 to 668 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA327444 hippocampus .a 196 to 769 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA726284   .a 196 to 768 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA743004   .a 196 to 701 2 to 508   capped   505/507
(99 %)
3 diff
(99.5 %id)
DA759650   .a 196 to 593 2 to 399   capped   398/398
(100 %)
3 diff
(99.3 %id)
DB071621 testis .a 196 to 716 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DB072236 testis .a 196 to 716 2 to 523   capped   522/522
(100 %)
3 diff
(99.5 %id)
DB083098 testis .a 196 to 753 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DB086445 testis .a 196 to 781 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DB092529 testis .a 196 to 733 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DB093441 testis .a 196 to 745 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DB281598 uterus .a 196 to 742 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA461659 tongue, tumor tissue .a 197 to 768 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
BP314298 mammary gland .a 198 to 778 1 to 581       581/581
(100 %)
15 diff
(97.5 %id)
DB064664 testis .a 198 to 735 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB070891 testis .a 198 to 734 2 to 540   capped   539/539
(100 %)
3 diff
(99.5 %id)
DB098500 testis .a 199 to 784 2 to 587   capped   586/586
(100 %)
3 diff
(99.5 %id)
DA316603 hippocampus .a 200 to 734 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA851416 placenta .a 200 to 786 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA727071   .a 201 to 744 2 to 546   capped   545/545
(100 %)
3 diff
(99.5 %id)
DA804592 brain .a 202 to 701 2 to 501   capped   500/500
(100 %)
1 diff
(99.8 %id)
DA337357 hippocampus .a 203 to 780 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
AW663273 2 pooled high-grade transitional celltumors, genitourinary tract .a 205 to 540 1 to 336       336/336
(100 %)
1 diff
(99.8 %id)
DB087785 testis .a 205 to 760 2 to 558   capped   557/560
(99 %)
4 diff
(99.3 %id)
BP232999 muscle .a 206 to 793 1 to 588       588/588
(100 %)
3 diff
(99.5 %id)
DA666366   .a 206 to 769 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DB226029 trachea .a 206 to 767 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB293831   .a 207 to 917 2 to 712   capped   711/711
(100 %)
3 diff
(99.6 %id)
AW499714 lymph .a 208 to 500 1 to 293       293/293
(100 %)
6 diff
(98.0 %id)
AW499722 lymph .a 208 to 617 1 to 410       410/410
(100 %)
6 diff
(98.6 %id)
CF142691 lymph .a 208 to 546 1 to 339       339/339
(100 %)
5 diff
(98.6 %id)
BU183317 melanotic melanoma, skin .a 210 to 975 1 to 770       770/868
(88 %)
13 diff
(98.6 %id)
DA724225   .a 211 to 781 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DA106066 cerebellum .a 212 to 777 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA755707   .a 212 to 680 2 to 470   capped   469/471
(99 %)
8 diff
(98.4 %id)
DB062341 testis .a 212 to 738 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB062600 testis .a 212 to 761 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
TI_154173754   .a 212 to 760 78 to 627       550/651
(84 %)
14 diff
(97.9 %id)
TI_158439505   .a 212 to 718 82 to 588       507/616
(82 %)
8 diff
(98.8 %id)
DA098709 cerebellum .a 214 to 755 2 to 543   capped   542/542
(100 %)
4 diff
(99.3 %id)
CN372076 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 214 to 975 1 to 765       765/765
(100 %)
8 diff
(99.0 %id)
DA414571 thalamus .a 220 to 760 2 to 542   capped   541/543
(99 %)
5 diff
(99.1 %id)
DB078467 testis .a 220 to 773 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DB060495 testis .a 221 to 790 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA375224 thalamus .a 225 to 782 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
BC012745 Skin, melanotic melanoma. .a 227 to 4589 1 to 4363 G1145S tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4363/4363
(100 %)
2 diff
(100.0 %id)
CN372079 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 231 to 637 1 to 407       407/407
(100 %)
1 diff
(99.8 %id)
DA398435 thalamus .a 233 to 792 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA391336 thalamus .a 234 to 812 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
CD626833   .a 234 to 833 1 to 596       596/597
(99 %)
11 diff
(98.2 %id)
DA185703 amygdala .a 235 to 783 2 to 550   capped   549/549
(100 %)
3 diff
(99.5 %id)
BP240049 Liver .a 235 to 784 1 to 550       550/550
(100 %)
5 diff
(99.1 %id)
DB232755 trachea .a 235 to 777 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA097610 cerebellum .a 237 to 788 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DA418302 thalamus .a 238 to 701 2 to 465   capped   464/464
(100 %)
2 diff
(99.6 %id)
AL596802 human spinal cord .a 239 to 833 29 to 623       595/626
(95 %)
8 diff
(98.8 %id)
DA183392 amygdala .a 240 to 797 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA224111 brain .a 240 to 889 2 to 651   capped   650/650
(100 %)
1 diff
(99.9 %id)
DA588491 lung .a 240 to 802 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA786530 brain .a 240 to 719 2 to 481   capped   480/480
(100 %)
2 diff
(99.6 %id)
DA809792 brain .a 240 to 823 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB063733 testis .a 240 to 781 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB206699 trachea .a 240 to 827 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DB215249 trachea .a 240 to 703 2 to 466   capped   465/465
(100 %)
1 diff
(99.8 %id)
DB217525 trachea .a 240 to 751 2 to 513   capped   512/512
(100 %)
3 diff
(99.5 %id)
DB292686 uterus .a 240 to 821 2 to 583   capped   582/582
(100 %)
4 diff
(99.4 %id)
BI333078 cervical carcinoma cell line, cervix .a 241 to 1052 1 to 808       808/848
(95 %)
11 diff
(98.8 %id)
CR997991 T-Lymphocytes .a 241 to 1021 5 to 788       784/788
(99 %)
6 diff
(99.3 %id)
DB150316 thymus .a 241 to 703 2 to 464   capped   463/463
(100 %)
1 diff
(99.8 %id)
DA319334 hippocampus .a 242 to 808 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA726100   .a 242 to 817 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA405213 thalamus .a 243 to 794 2 to 553   capped   552/557
(99 %)
2 diff
(99.7 %id)
DA247319 brain .a 244 to 829 2 to 587   capped   586/586
(100 %)
5 diff
(99.2 %id)
BQ055263 lymph, lymphoma, cell line .a 244 to 921 1 to 686       686/1295
(52 %)
12 diff
(99.1 %id)
BQ061752 lymph, lymphoma, cell line .a 244 to 1192 1 to 949       949/1012
(93 %)
15 diff
(98.6 %id)
BQ063148 lymph, lymphoma, cell line .a 244 to 1184 1 to 943       943/1014
(92 %)
13 diff
(98.8 %id)
BQ064252 lymph, lymphoma, cell line .a 244 to 940 1 to 711       711/942
(75 %)
18 diff
(98.1 %id)
BQ642392 lymph, lymphoma, cell line .a 244 to 1055 1 to 823       823/965
(85 %)
19 diff
(98.1 %id)
DA770458 brain .a 244 to 821 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA097423 cerebellum .a 245 to 808 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA325055 hippocampus .a 245 to 807 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA231457 brain .a 246 to 778 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB214906 trachea .a 246 to 775 2 to 531   capped   530/530
(100 %)
4 diff
(99.3 %id)
BF125127 melanotic melanoma, skin .a 247 to 836 1 to 582       582/955
(60 %)
26 diff
(97.3 %id)
BE407447 choriocarcinoma, placenta .a 249 to 939 1 to 690       690/710
(97 %)
11 diff
(98.5 %id)
DB089818 testis .a 249 to 802 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DA453657 tongue, tumor tissue .a 250 to 704 2 to 456   capped   455/575
(79 %)
3 diff
(99.5 %id)
DA242125 brain .a 252 to 832 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA325386 hippocampus .a 252 to 807 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
CA389102 eye, RPE/choroid .a 261 to 769 1 to 509       509/509
(100 %)
3 diff
(99.5 %id)
BU184008 melanotic melanoma, skin .a 266 to 841 1 to 581       581/955
(60 %)
16 diff
(98.4 %id)
BP353517   .a 269 to 847 1 to 580       580/582
(99 %)
14 diff
(97.6 %id)
DB092630 testis .a 269 to 820 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DA187036 amygdala .a 270 to 816 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA192933 amygdala .a 270 to 861 2 to 594   capped   593/593
(100 %)
3 diff
(99.5 %id)
DA296949 hippocampus .a 270 to 836 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA315098 hippocampus .a 270 to 846 2 to 578   capped   577/577
(100 %)
4 diff
(99.4 %id)
DA401571 thalamus .a 270 to 837 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA409872 thalamus .a 270 to 805 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA586696 lung .a 270 to 789 2 to 522   capped   521/521
(100 %)
3 diff
(99.5 %id)
DB133486 thymus .a 270 to 833 2 to 565   capped   564/565
(99 %)
1 diff
(99.9 %id)
DB293906   .a 270 to 999 2 to 738   capped   737/827
(89 %)
16 diff
(98.1 %id)
DA096153 cerebellum .a 271 to 858 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
DA187249 amygdala .a 271 to 807 2 to 538   capped   537/537
(100 %)
3 diff
(99.5 %id)
DA187684 amygdala .a 271 to 818 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA222414 brain .a 271 to 874 2 to 605   capped   604/604
(100 %)
0 diff
(100 %id)
DA326163 hippocampus .a 271 to 830 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA407615 thalamus .a 271 to 824 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB072038 testis .a 271 to 808 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB176448 kidney, tumor tissue .a 271 to 828 2 to 559   capped   558/558
(100 %)
4 diff
(99.3 %id)
DA010259 adrenal gland .a 272 to 845 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB085151 testis .a 272 to 819 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA238237 brain .a 275 to 861 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
AW238883 lung, cell line .a 277 to 691 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
DA210118 brain .a 281 to 855 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA403570 thalamus .a 281 to 571 2 to 292   capped   291/291
(100 %)
1 diff
(99.7 %id)
DA619261   .a 281 to 878 2 to 599   capped   598/598
(100 %)
3 diff
(99.5 %id)
DA857970 placenta .a 281 to 850 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DR002057 fetal brain .a 281 to 928 1 to 646       646/646
(100 %)
7 diff
(99.0 %id)
DB098980 testis .a 281 to 874 2 to 595   capped   594/594
(100 %)
4 diff
(99.4 %id)
AU142213   .a 281 to 1006 2 to 733   capped   732/732
(100 %)
14 diff
(98.1 %id)
BU172395 melanotic melanoma, skin .a 290 to 1119 1 to 838       836/877
(95 %)
11 diff
(98.8 %id)
DA404953 thalamus .a 296 to 848 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
TI_1948150829   .a 297 to 753 117 to 577       461/1386
(33 %)
17 diff
(98.8 %id)
TI_1948150830   .a 297 to 996 119 to 825       707/1094
(64 %)
11 diff
(99.0 %id)
TI_1948151102   .a 297 to 999 117 to 830       714/1417
(50 %)
24 diff
(98.4 %id)
TI_1948151103   .a 297 to 1080 119 to 906       788/1012
(77 %)
11 diff
(99.0 %id)
TI_1948151372   .a 297 to 1053 118 to 881       764/1045
(73 %)
19 diff
(98.2 %id)
TI_1948151658   .a 297 to 1056 118 to 882       765/1341
(57 %)
32 diff
(97.7 %id)
TI_1948151659   .a 297 to 1160 118 to 991       874/996
(87 %)
22 diff
(97.8 %id)
DR432882 mixed .a 299 to 971 1 to 673       673/678
(99 %)
10 diff
(98.6 %id)
DR432840 mixed .a 299 to 984 1 to 686       686/686
(100 %)
11 diff
(98.4 %id)
DB228403 trachea .a 303 to 862 8 to 567   capped   560/560
(100 %)
2 diff
(99.7 %id)
CN372080 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 304 to 887 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
AI909779 breast .a 388 to 817 1 to 432       430/432
(99 %)
10 diff
(97.7 %id)
BU153880 epithelioid carcinoma, Pancreas .a 414 to 1183 1 to 774       774/917
(84 %)
14 diff
(98.5 %id)
CD626834   .a 613 to 1247 637 to 1       637/640
(99 %)
10 diff
(98.5 %id)
AK000238 colon mucosa .a 755 to 2645 1 to 1892   available from FLJ, AAA   1892/1946
(97 %)
4 diff
(99.8 %id)
BP223946 colon mucosa .a 756 to 1411 1 to 662       662/888
(74 %)
12 diff
(98.7 %id)
DA781081 brain .a 798 to 1358 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA185773 amygdala .a 837 to 1385 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA453397 tongue, tumor tissue .a 851 to 1424 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DR432836 mixed .a 3547 to 4196 651 to 6       646/652
(99 %)
9 diff
(98.7 %id)
AU159568   .a 4040 to 4589 545 to 1       545/552
(98 %)
9 diff
(98.4 %id)
DC427551   .a 4042 to 4589 547 to 1       547/550
(99 %)
8 diff
(98.6 %id)
DB383850   .a 4049 to 4589 540 to 1       540/540
(100 %)
8 diff
(98.6 %id)
DB383640   .a 4088 to 4589 502 to 1       502/540
(92 %)
13 diff
(97.6 %id)
DB383773   .a 4143 to 4589 445 to 1       445/488
(91 %)
8 diff
(98.4 %id)
DC372041   .b 1 to 546 2 to 547   tiling clone,   547/547
(100 %)
2 diff
(99.7 %id)
DC372615   .b 4 to 557 1 to 554       554/557
(99 %)
3 diff
(99.5 %id)
CD626835   .b 16 to 295 1 to 280       280/295
(94 %)
4 diff
(98.7 %id)
CD626836   .b 16 to 295 293 to 14       280/293
(95 %)
0 diff
(100 %id)
NM_001145114.1   .b 50 to 4291 1 to 4242 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4242/4242
(100 %)
0 diff
(100 %id)
AK296315 thalamus .b 186 to 3986 1 to 3801 K188R K757R G1084S K1135R tiling clone,   3801/3801
(100 %)
6 diff
(99.9 %id)
DC342187 thalamus .b 186 to 685 1 to 500       500/500
(100 %)
1 diff
(99.8 %id)
AI909814 breast .b 641 to 930 290 to 1       290/330
(87 %)
5 diff
(98.5 %id)
DA408680 thalamus .b 696 to 1251 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AW175942 breast .b 709 to 915 1 to 207       207/207
(100 %)
5 diff
(97.6 %id)
BM479271 duodenal adenocarcinoma, cell line, small intestine .b 736 to 1487 1 to 752   tiling clone,   752/1014
(74 %)
10 diff
(99.1 %id)
BG335453 choriocarcinoma, placenta .b 762 to 1538 1 to 769       769/961
(80 %)
12 diff
(98.8 %id)
BG480000 choriocarcinoma, placenta .b 762 to 1682 1 to 914       914/984
(92 %)
28 diff
(97.2 %id)
DA810706 brain .b 793 to 1349 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
BP315147 mammary gland .b 822 to 1404 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
DA743002   .b 846 to 1326 2 to 483   capped   482/492
(97 %)
4 diff
(99.2 %id)
BG490566 large cell carcinoma, lung .b 852 to 1530 1 to 687       687/741
(92 %)
28 diff
(96.3 %id)
BQ232914 large cell carcinoma, lung .b 870 to 1614 1 to 747       747/808
(92 %)
4 diff
(99.6 %id)
BI047758 stomach .b 871 to 1119 249 to 1       249/249
(100 %)
2 diff
(99.2 %id)
AL045737 testis .b 902 to 1296 1 to 395       395/400
(98 %)
2 diff
(99.5 %id)
BM458486 lymph, lymphoma, cell line .b 940 to 1685 1 to 753       753/1169
(64 %)
10 diff
(99.2 %id)
AW606500 head_neck .b 966 to 1071 3 to 110       108/111
(97 %)
14 diff
(87.4 %id)
DA343748 substantia nigra .b 1262 to 1830 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
CN372078 embryonic stem cells, cell lines H1, H7, andH9 .b 1334 to 1938 1 to 605       605/605
(100 %)
0 diff
(100 %id)
AU117088 whole embryo, mainly head .b 1369 to 2004 2 to 639   capped   638/639
(99 %)
3 diff
(99.6 %id)
BM561277 duodenal adenocarcinoma, cell line, small intestine .b 1405 to 2229 1 to 820       820/862
(95 %)
9 diff
(99.0 %id)
CA488121   .b 1449 to 2323 1 to 879       879/879
(100 %)
5 diff
(99.5 %id)
BP240726 Liver .b 1457 to 2025 1 to 568       568/568
(100 %)
18 diff
(96.9 %id)
BF350862 head_neck .b 1603 to 2015 1 to 414       414/421
(98 %)
17 diff
(96.0 %id)
CN372077 embryonic stem cells, cell lines H1, H7, andH9 .b 1607 to 2227 1 to 621       621/621
(100 %)
2 diff
(99.7 %id)
EC444790 Prostate .b 1682 to 1768 90 to 3       88/102
(86 %)
0 diff
(100 %id)
CX783487 human embryonic stem cells .b 1736 to 2516 1 to 781       781/781
(100 %)
1 diff
(99.9 %id)
BU180759 embryonal carcinoma, cell line, testis .b 1766 to 2441 1 to 683       683/932
(73 %)
19 diff
(98.0 %id)
CN372081 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1803 to 2345 1 to 543       543/543
(100 %)
2 diff
(99.7 %id)
BQ362741 stomach .b 1809 to 2066 258 to 1       258/258
(100 %)
4 diff
(98.5 %id)
EC548251 Prostate .b 1820 to 1894 78 to 5       74/78
(94 %)
0 diff
(100 %id)
BI090558 cervix .b 1973 to 2728 1 to 761       761/761
(100 %)
18 diff
(97.7 %id)
BG765879 melanotic melanoma, high MDR (cell line), skin .b 1991 to 2804 1 to 811       811/936
(86 %)
16 diff
(98.3 %id)
BG770177 melanotic melanoma, high MDR (cell line), skin .b 1991 to 2598 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
BG770036 melanotic melanoma, high MDR (cell line), skin .b 1991 to 2749 1 to 758       758/760
(99 %)
6 diff
(99.3 %id)
CX788587 human embryonic stem cells .b 2025 to 2826 8 to 809       802/809
(99 %)
0 diff
(100 %id)
BF027319 melanotic melanoma, skin .b 2026 to 2809 16 to 801       791/833
(94 %)
33 diff
(96.1 %id)
CD359328 testis .b 2136 to 2959 1 to 830       830/878
(94 %)
13 diff
(98.6 %id)
CB154053 brain .b 2154 to 2635 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
BU151626 eye, normal pigmented retinal epithelium .b 2168 to 2961 1 to 797       797/904
(88 %)
20 diff
(97.8 %id)
BG330818 large cell carcinoma, lung .b 2177 to 2907 1 to 727       727/967
(75 %)
15 diff
(98.5 %id)
BU174706 ductal carcinoma, cell line, Pancreas .b 2204 to 3070 1 to 868       868/973
(89 %)
12 diff
(98.8 %id)
EC553572 Prostate .b 2214 to 2309 1 to 96       96/96
(100 %)
0 diff
(100 %id)
EC582275 Prostate .b 2214 to 2309 1 to 96       96/96
(100 %)
0 diff
(100 %id)
CF142267 CNCAP(3)T-225 cell line, Prostate .b 2327 to 2543 1 to 217       217/217
(100 %)
11 diff
(95.0 %id)
AL043253 testis .b 2331 to 3052 1 to 724       724/821
(88 %)
13 diff
(98.5 %id)
BU177124 melanotic melanoma, skin .b 2352 to 2958 1 to 611       611/923
(66 %)
12 diff
(98.7 %id)
BE932858 head_neck .b 2381 to 2796 11 to 424       414/424
(97 %)
11 diff
(97.5 %id)
BG119055 adenocarcinoma, cell line, Liver .b 2407 to 3052 1 to 645       645/935
(68 %)
3 diff
(99.7 %id)
BE894395 melanotic melanoma, skin .b 2440 to 3025 1 to 586   tiling clone,   586/586
(100 %)
0 diff
(100 %id)
BM450708 eye, retinoblastoma .b 2474 to 3183 1 to 713       713/1146
(62 %)
11 diff
(99.1 %id)
BF759769 colon .b 2580 to 2996 10 to 425       420/425
(98 %)
6 diff
(98.6 %id)
BF840469 head_neck .b 2584 to 2804 229 to 9     Submitted on the opposite strand 221/229
(96 %)
0 diff
(100 %id)
BF840474 head_neck .b 2584 to 2804 237 to 17     Submitted on the opposite strand 221/237
(93 %)
0 diff
(100 %id)
BI869792 adenocarcinoma, cell line, Liver .b 2587 to 3269 16 to 710       696/1028
(67 %)
26 diff
(97.5 %id)
TI_57229189   .b 2587 to 3269 71 to 765       696/1028
(67 %)
26 diff
(97.5 %id)
BF812354 colon_ins .b 2628 to 3076 1 to 450       450/450
(100 %)
12 diff
(97.4 %id)
BP255302 Kidney .b 2638 to 3219 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BQ677354 melanotic melanoma, cell line, skin .b 2657 to 3469 4 to 829       826/968
(85 %)
30 diff
(97.0 %id)
BQ677229 melanotic melanoma, cell line, skin .b 2657 to 3523 4 to 874       871/874
(99 %)
23 diff
(97.4 %id)
BQ434860 melanotic melanoma, skin .b 2666 to 3486 1 to 829       829/849
(97 %)
19 diff
(97.8 %id)
BU838193 melanotic melanoma, cell line, skin .b 2674 to 3494 1 to 834       834/848
(98 %)
23 diff
(97.3 %id)
BU196904 melanotic melanoma, cell line, skin .b 2674 to 3364 1 to 693       693/947
(73 %)
12 diff
(98.8 %id)
BQ683355 melanotic melanoma, cell line, skin .b 2674 to 2953 1 to 280       280/280
(100 %)
0 diff
(100 %id)
BQ677426 melanotic melanoma, cell line, skin .b 2674 to 3357 1 to 685       685/950
(72 %)
8 diff
(99.2 %id)
BU839312 melanotic melanoma, cell line, skin .b 2674 to 3397 1 to 726       726/910
(79 %)
12 diff
(98.7 %id)
BU839396 melanotic melanoma, cell line, skin .b 2674 to 3497 1 to 833       833/917
(90 %)
23 diff
(97.5 %id)
BQ898738 melanotic melanoma, cell line, skin .b 2674 to 3403 1 to 732       732/943
(77 %)
20 diff
(97.9 %id)
BF812352 colon_ins .b 2693 to 3078 73 to 463       392/463
(84 %)
17 diff
(96.4 %id)
BF766212 colon_est .b 2700 to 2863 1 to 164       164/166
(98 %)
3 diff
(98.2 %id)
BP222737   .b 2777 to 3360 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
BF229502 colon_ins .b 2778 to 3257 525 to 46       480/525
(91 %)
0 diff
(100 %id)
BE744506 adenocarcinoma cell line, ovary .b 2840 to 3633 1 to 790       790/922
(85 %)
4 diff
(99.6 %id)
BM551462 astrocytoma grade IV, cell line, brain .b 2852 to 3886 1 to 1042       1040/1052
(98 %)
37 diff
(96.5 %id)
BF692570 melanotic melanoma, high MDR, skin .b 2894 to 3577 1 to 673       673/883
(76 %)
29 diff
(96.8 %id)
DA402630 thalamus .b 2922 to 3504 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BM810859 amelanotic melanoma, cell line, skin .b 2941 to 3713 1 to 779       779/1125
(69 %)
21 diff
(98.2 %id)
BM916373 amelanotic melanoma, cell line, skin .b 2941 to 3916 1 to 979       979/1083
(90 %)
19 diff
(98.3 %id)
TI_1948151105   .b 2960 to 3898 1073 to 136       940/1355
(69 %)
34 diff
(97.5 %id)
TI_1948151660   .b 2960 to 3898 1072 to 128       945/1202
(78 %)
25 diff
(98.0 %id)
TI_1948151661   .b 3043 to 3898 995 to 138       858/1356
(63 %)
29 diff
(97.9 %id)
BM822370 stomach .b 3047 to 3564 1 to 514       512/514
(99 %)
7 diff
(98.7 %id)
BM822294 stomach .b 3047 to 3551 1 to 501       499/501
(99 %)
7 diff
(98.7 %id)
BM831458 stomach .b 3049 to 3566 1 to 518       518/518
(100 %)
0 diff
(100 %id)
BM821755 stomach .b 3051 to 3571 1 to 518       518/518
(100 %)
6 diff
(98.9 %id)
TI_1948151104   .b 3052 to 3898 982 to 129       854/1202
(71 %)
19 diff
(98.5 %id)
BM825269 Ascites, stomach .b 3060 to 3676 1 to 617       617/617
(100 %)
2 diff
(99.7 %id)
BM822316 stomach .b 3068 to 3351 1 to 282       282/282
(100 %)
3 diff
(99.0 %id)
AU144009 whole embryo, mainly head .b 3075 to 4291 563 to 1       544/563
(96 %)
33 diff
(94.2 %id)
BM798249 Ascites, stomach .b 3112 to 3473 1 to 362       362/362
(100 %)
3 diff
(99.2 %id)
BQ421822 embryonal carcinoma, cell line, testis .b 3127 to 3883 1 to 765       763/921
(82 %)
18 diff
(98.1 %id)
BM966919 Islets of Langerhans, Pancreas .b 3180 to 3734 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
CK823321 Islets of Langerhans, Pancreas .b 3180 to 3746 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
BM473671 duodenal adenocarcinoma, cell line, small intestine .b 3197 to 3516 13 to 332   AAA   320/477
(67 %)
9 diff
(98.2 %id)
AW577908 colon_normal .b 3255 to 3599 348 to 5       344/348
(98 %)
2 diff
(99.5 %id)
BG491797 amelanotic melanoma, cell line, skin .b 3273 to 3603 1 to 332   fully sequenced,   332/332
(100 %)
3 diff
(99.1 %id)
BM716719 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3276 to 3827 1 to 552   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 552/552
(100 %)
1 diff
(99.9 %id)
BC002621 Brain, neuroblastoma .b 3287 to 4291 1 to 1005   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1005/1005
(100 %)
2 diff
(99.9 %id)
BE314063 brain, neuroblastoma .b 3306 to 3991 1 to 681   available from MGC,   681/722
(94 %)
21 diff
(97.1 %id)
BE313331 brain, neuroblastoma .b 3306 to 4124 1 to 815       815/913
(89 %)
31 diff
(96.7 %id)
AA126812 lung, lung carcinoma .b 3348 to 3769 1 to 420   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 420/420
(100 %)
6 diff
(98.6 %id)
BF795932 lymph, lymphoma, cell line .b 3353 to 4164 1 to 799       799/941
(84 %)
26 diff
(97.3 %id)
BG574794 breast, mammary adenocarcinoma, cell line .b 3366 to 4195 1 to 830       830/831
(99 %)
6 diff
(99.3 %id)
BP223755 colon mucosa .b 3375 to 4170 1 to 785       785/785
(100 %)
16 diff
(98.0 %id)
TI_159723226   .b 3405 to 4291 960 to 83   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 878/998
(87 %)
17 diff
(98.3 %id)
BQ212576 embryonal carcinoma, cell line, testis .b 3411 to 4127 1 to 720       720/921
(78 %)
6 diff
(99.4 %id)
BE928660 denis_drash .b 3417 to 3711 336 to 45       292/339
(86 %)
0 diff
(100 %id)
BF758383 colon .b 3417 to 3748 7 to 337       329/339
(97 %)
7 diff
(98.0 %id)
BF758412 colon .b 3417 to 3748 10 to 338       329/340
(96 %)
7 diff
(98.0 %id)
BF780106 denis_drash .b 3417 to 3698 282 to 1     Submitted on the opposite strand 238/285
(83 %)
24 diff
(91.6 %id)
BF830381 leiomios .b 3417 to 3748 18 to 344       327/346
(94 %)
7 diff
(98.0 %id)
BQ057393 lymph, lymphoma, cell line .b 3426 to 4291 914 to 36   AAA Submitted on the opposite strand 879/1006
(87 %)
38 diff
(96.3 %id)
BE742007 adenocarcinoma cell line, ovary .b 3434 to 3951 1 to 517       517/519
(99 %)
5 diff
(99.1 %id)
BG399926 Kidney .b 3444 to 4193 1 to 745       745/747
(99 %)
17 diff
(97.8 %id)
BF084859 denis_drash .b 3496 to 3748 7 to 259       253/260
(97 %)
11 diff
(95.8 %id)
BM726231 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3508 to 3827 1 to 320   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 320/320
(100 %)
0 diff
(100 %id)
BQ641932 lymph, lymphoma, cell line .b 3521 to 4291 806 to 36   AAA Submitted on the opposite strand 771/910
(84 %)
1 diff
(99.9 %id)
TI_149288091   .b 3521 to 4291 856 to 89   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 768/975
(78 %)
3 diff
(99.7 %id)
BQ065216 lymph, lymphoma, cell line .b 3522 to 4291 806 to 36   AAA Submitted on the opposite strand 771/1006
(76 %)
6 diff
(99.5 %id)
TI_149300031   .b 3524 to 4291 871 to 104   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 768/955
(80 %)
5 diff
(99.5 %id)
CA443802 Fibrosarcoma .b 3528 to 4291 782 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 764/764
(100 %)
5 diff
(99.4 %id)
T11927   .b 3532 to 3696 1 to 164       164/165
(99 %)
7 diff
(95.8 %id)
CB148139 Liver .b 3539 to 4128 1 to 589       589/589
(100 %)
6 diff
(99.0 %id)
BG492230 amelanotic melanoma, cell line, skin .b 3542 to 4242 722 to 6   fully sequenced,   717/722
(99 %)
1 diff
(99.9 %id)
CD368919 Alveolar Macrophage, lung .b 3542 to 4291 769 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 751/765
(98 %)
5 diff
(99.4 %id)
BU623443 cell lines, Enchondroma .b 3543 to 4291 766 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 748/748
(100 %)
1 diff
(99.9 %id)
BM970164 lung .b 3556 to 4291 754 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 736/736
(100 %)
1 diff
(99.9 %id)
BF084860 denis_drash .b 3579 to 3748 188 to 20       169/188
(89 %)
1 diff
(99.5 %id)
TI_149286552   .b 3640 to 4291 733 to 82   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 652/704
(92 %)
11 diff
(98.5 %id)
BQ642721 lymph, lymphoma, cell line .b 3643 to 4291 684 to 36   AAA Submitted on the opposite strand 649/914
(71 %)
1 diff
(99.9 %id)
TI_149278839   .b 3645 to 4291 770 to 124   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 647/1028
(62 %)
4 diff
(99.7 %id)
CA426412 cell lines, Chondrosarcoma .b 3659 to 4291 651 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 633/633
(100 %)
0 diff
(100 %id)
BU632608 cell lines, Chondrosarcoma .b 3669 to 4290 640 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 622/622
(100 %)
1 diff
(99.9 %id)
BM969372 lung, Primary Lung Epithelial Cells .b 3687 to 4291 623 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 605/605
(100 %)
2 diff
(99.7 %id)
BM972108 lung .b 3699 to 4291 611 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 593/593
(100 %)
3 diff
(99.5 %id)
AA126764 lung, lung carcinoma .b 3739 to 4291 566 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 551/551
(100 %)
9 diff
(98.4 %id)
BM674354 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3766 to 4291 544 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 526/526
(100 %)
0 diff
(100 %id)
BM680846 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3766 to 4291 544 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 526/526
(100 %)
0 diff
(100 %id)
DC372843   .c 1 to 542 2 to 543   tiling clone,   543/543
(100 %)
1 diff
(99.9 %id)
AB014590 brain .c 393 to 4430 1 to 4038 G1045S tiling clone, available from KIAA,   4038/4038
(100 %)
2 diff
(100.0 %id)
DC372102   .d 1 to 542 5 to 546   tiling clone,   546/546
(100 %)
3 diff
(99.5 %id)
DA809265 brain .d 259 to 801 2 to 544   tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
DA480447   .d 316 to 874 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
AK131283 brain .d 787 to 4287 1 to 3501   tiling clone, available from FLJ,   3501/3501
(100 %)
8 diff
(99.8 %id)
DA534318 brain .d 788 to 1367 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DB317847 brain .d 3748 to 4287 540 to 1       540/540
(100 %)
2 diff
(99.7 %id)
DA704720   .e 1 to 528 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DA712293   .e 1 to 528 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA714803   .e 1 to 535 2 to 536   tiling clone, capped   535/535
(100 %)
0 diff
(100 %id)
AL832924 melanoma (MeWo cell line) .e 399 to 3668 1 to 3271 R398Q tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3271/3271
(100 %)
3 diff
(100.0 %id)
DA474470   .e 643 to 1205 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA204868 brain .e 755 to 1220 126 to 592   capped   467/591
(79 %)
6 diff
(99.0 %id)
BX503196 Liver .e 1224 to 1521 1 to 298       298/298
(100 %)
1 diff
(99.7 %id)
DB314831   .e 3127 to 3668 543 to 1       543/543
(100 %)
3 diff
(99.5 %id)
DR432643 mixed .f 1 to 566 1 to 566   tiling clone, fully sequenced,   566/566
(100 %)
4 diff
(99.3 %id)
DR432930 mixed .f 1 to 566 1 to 566   fully sequenced,   566/566
(100 %)
4 diff
(99.3 %id)
AA463792   .f 6 to 451 1 to 443       443/452
(98 %)
16 diff
(96.5 %id)
TI_1948150831   .f 174 to 1036 996 to 128   tiling clone,   869/1235
(70 %)
28 diff
(97.8 %id)
TI_1948151373   .f 192 to 1036 983 to 131       853/1272
(67 %)
33 diff
(97.5 %id)
TI_1948150832   .f 195 to 1036 978 to 135       844/1396
(60 %)
28 diff
(98.0 %id)
DR432634 mixed .f 505 to 1036 537 to 6   fully sequenced,   532/537
(99 %)
4 diff
(99.3 %id)
DR432934 mixed .f 505 to 1036 537 to 6   fully sequenced,   532/537
(99 %)
0 diff
(100 %id)
AA460229   .f 1122 to 1430 312 to 5   tiling clone,   308/312
(98 %)
0 diff
(100 %id)
AK056614 tongue .g 1 to 1918 2 to 1919 R296Q tiling clone, available from FLJ,   1919/1919
(100 %)
3 diff
(99.9 %id)
DA762053 tongue .g 1 to 459 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
AA302835 adipose tissue, white .g 856 to 1265 1 to 411     Submitted on the opposite strand 411/411
(100 %)
14 diff
(96.6 %id)
CB242640 Human Lung Epithelial cells, lung .g 871 to 1574 722 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 704/704
(100 %)
1 diff
(99.9 %id)
BF037364 adenocarcinoma, ovary .g 876 to 1574 1 to 702       702/707
(99 %)
7 diff
(99.1 %id)
AL046767 testis .g 882 to 1464 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BM976193 lung, Primary Lung Cystic Fibrosis EpithelialCells .g 890 to 1574 703 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 685/685
(100 %)
0 diff
(100 %id)
AA321050 adipose tissue, white .g 894 to 1199 1 to 314       314/317
(99 %)
12 diff
(96.3 %id)
TI_154190562   .g 1000 to 1574 51 to 625   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 575/625
(92 %)
6 diff
(99.1 %id)
BM893668 Islets of Langerhans, Pancreas .g 1012 to 1574 574 to 12   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 563/563
(100 %)
2 diff
(99.7 %id)
AI961190 pooled germ cell tumors .g 1028 to 1575 554 to 7       548/554
(98 %)
0 diff
(100 %id)
BU626086 cell lines, Enchondroma .g 1032 to 1574 561 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 543/543
(100 %)
0 diff
(100 %id)
BI031839 marrow .g 1033 to 1306 1 to 274       274/274
(100 %)
1 diff
(99.7 %id)
DB304638.
matches multiple genes
brain .g 1036 to 1574 539 to 1     also hits gene nikayu 539/539
(100 %)
2 diff
(99.7 %id)
CA424538 cell lines, Chondrosarcoma .g 1046 to 1574 546 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 528/528
(100 %)
2 diff
(99.7 %id)
CB159811 Liver .g 1056 to 1574 537 to 19   AAA Submitted on the opposite strand 519/519
(100 %)
0 diff
(100 %id)
AW193809 pooled germ cell tumors .g 1076 to 1575 509 to 7       503/509
(98 %)
0 diff
(100 %id)
TI_154134854   .g 1076 to 1574 596 to 98   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 499/501
(99 %)
1 diff
(99.9 %id)
AI655197 pooled germ cell tumors .g 1080 to 1575 499 to 4       496/499
(99 %)
0 diff
(100 %id)
AI342353 uterus .g 1082 to 1573 494 to 3       492/494
(99 %)
0 diff
(100 %id)
CA306040 Alveolar Macrophage, lung .g 1083 to 1573 509 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 491/508
(96 %)
1 diff
(99.9 %id)
BF842472 head_neck .g 1087 to 1209 1 to 123       123/123
(100 %)
1 diff
(99.2 %id)
AW959782   .g 1095 to 1570 479 to 1     Submitted on the opposite strand 479/481
(99 %)
33 diff
(93.2 %id)
AW327488 blood, T cell leukemia .g 1098 to 1536 1 to 440       440/440
(100 %)
4 diff
(99.1 %id)
AA411751 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1112 to 1574 1 to 457       457/457
(100 %)
10 diff
(97.9 %id)
AA479772 ovarian tumor, ovary .g 1119 to 1558 16 to 451   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 436/451
(96 %)
6 diff
(98.7 %id)
BP396815 pancreatic islet .g 1128 to 1575 1 to 448     Submitted on the opposite strand 448/451
(99 %)
2 diff
(99.6 %id)
AI927333 Kidney .g 1128 to 1574 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
F30946 pectoral muscle (after mastectomy) .g 1129 to 1535 1 to 408       408/408
(100 %)
1 diff
(99.8 %id)
BF814823 colon_ins .g 1140 to 1524 7 to 391       385/395
(97 %)
26 diff
(93.5 %id)
AA828005 colon, colon tumor .g 1142 to 1574 432 to 1       432/432
(100 %)
10 diff
(97.7 %id)
AI188138   .g 1150 to 1575 428 to 3       426/428
(99 %)
0 diff
(100 %id)
BF843103 head_neck .g 1151 to 1509 359 to 1     Submitted on the opposite strand 359/359
(100 %)
1 diff
(99.8 %id)
CN373243 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 1152 to 1571 1 to 420       420/420
(100 %)
5 diff
(98.9 %id)
AW043880 pooled .g 1152 to 1574 434 to 12   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 423/423
(100 %)
13 diff
(97.0 %id)
AI991711 pooled germ cell tumors .g 1173 to 1575 409 to 7       403/409
(98 %)
0 diff
(100 %id)
AI346796 adenocarcinoma, colon .g 1182 to 1574 410 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 393/393
(100 %)
8 diff
(98.0 %id)
AI335649 pooled germ cell tumors .g 1182 to 1575 401 to 8       394/401
(98 %)
0 diff
(100 %id)
AI281188 adenocarcinoma, colon .g 1184 to 1574 410 to 20   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 391/391
(100 %)
2 diff
(99.5 %id)
AI949036 pooled germ cell tumors .g 1186 to 1575 396 to 7       390/396
(98 %)
0 diff
(100 %id)
AA629892 lung, lung carcinoma .g 1187 to 1411 224 to 1       224/224
(100 %)
1 diff
(99.6 %id)
CF129026 Chondrosarcoma Lung Metastasis cell lines, lung .g 1191 to 1574 1 to 384   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 384/384
(100 %)
0 diff
(100 %id)
AA477343 ovarian tumor, ovary .g 1193 to 1574 388 to 12   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 377/377
(100 %)
7 diff
(98.2 %id)
AI766261 Kidney .g 1212 to 1574 376 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 363/363
(100 %)
10 diff
(97.3 %id)
BP387826 pancreatic islet .g 1218 to 1550 1 to 333     Submitted on the opposite strand 333/333
(100 %)
1 diff
(99.7 %id)
AI078576 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1220 to 1574 368 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 355/355
(100 %)
2 diff
(99.5 %id)
F28265 pectoral muscle (after mastectomy) .g 1232 to 1451 1 to 220       220/220
(100 %)
3 diff
(98.7 %id)
AW129014 brain, tumor, 5 pooled (see description) .g 1233 to 1575 348 to 5       344/349
(98 %)
0 diff
(100 %id)
AW614907 colon, moderately-differentiated adenocarcinoma .g 1237 to 1574 351 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 338/338
(100 %)
3 diff
(99.2 %id)
BM144360 leukopheresis .g 1241 to 1575 350 to 16       335/352
(95 %)
0 diff
(100 %id)
EC553185 Prostate .g 1275 to 1375 98 to 1       98/98
(100 %)
3 diff
(97.0 %id)
EC567954 Prostate .g 1275 to 1375 99 to 1       99/99
(100 %)
2 diff
(98.0 %id)
BG820720 anaplastic oligodendroglioma with 1p/19qloss, brain .g 1277 to 1574 1 to 298   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 298/298
(100 %)
0 diff
(100 %id)
AA302834 adipose tissue, white .g 1284 to 1569 286 to 1     Submitted on the opposite strand 286/286
(100 %)
2 diff
(99.4 %id)
AA004866 liver and spleen .g 1289 to 1574 286 to 1       286/286
(100 %)
7 diff
(97.6 %id)
AW015257   .g 1290 to 1574 302 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 285/285
(100 %)
4 diff
(98.6 %id)
AI686624 Prostate .g 1291 to 1575 289 to 5       285/289
(98 %)
0 diff
(100 %id)
AI052651 liver and spleen .g 1294 to 1574 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AI433160 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 1297 to 1574 334 to 57   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 278/278
(100 %)
14 diff
(95.0 %id)
AA580856 bulk germ cell seminoma .g 1317 to 1575 259 to 1       259/259
(100 %)
8 diff
(97.0 %id)
BE502529 pooled germ cell tumors .g 1347 to 1575 234 to 6       229/234
(97 %)
0 diff
(100 %id)
BF115351 brain, glioblastoma (pooled) .g 1347 to 1574 228 to 1       228/228
(100 %)
1 diff
(99.6 %id)
FN073793 breast carcinoma .g 1379 to 1432 54 to 1     Submitted on the opposite strand 54/61
(88 %)
0 diff
(100 %id)
AI869425 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .g 1383 to 1575 199 to 7       193/200
(96 %)
0 diff
(100 %id)
DB325359 tongue .g 1396 to 1918 523 to 1       523/523
(100 %)
0 diff
(100 %id)
AI699618 pooled germ cell tumors .g 1410 to 1575 171 to 6       166/171
(97 %)
0 diff
(100 %id)
AA581034 bulk germ cell seminoma .g 1412 to 1575 1 to 163       163/164
(99 %)
3 diff
(98.2 %id)
GD138617   .g 1454 to 1575 1 to 123       123/134
(91 %)
4 diff
(97.1 %id)
C01502   .g 1473 to 1585 1 to 113       113/113
(100 %)
0 diff
(100 %id)
DA103856 cerebellum .h -8 to 538 2 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
ES310967 scalp interfollicular dermis, skin .h 446 to 835 1 to 391   tiling clone,   391/391
(100 %)
2 diff
(99.5 %id)
CA309456 Alveolar Macrophage, lung .i 1 to 533 548 to 16 I123P tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 533/548
(97 %)
0 diff
(100 %id)
BF514666   .j 1 to 456 473 to 18 G53S tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 456/456
(100 %)
1 diff
(99.8 %id)
BF876054 lung_tumor .j 198 to 651 1 to 453   tiling clone,   453/453
(100 %)
6 diff
(98.7 %id)
BF206621 brain, neuroblastoma .j 248 to 998 1 to 741   tiling clone,   741/882
(84 %)
55 diff
(93.8 %id)
BI029623 marrow .k-u 1 to 419 419 to 1 C3W G8A A9Q E11K G14A ... tiling clone,   419/421
(99 %)
34 diff
(92.0 %id)
AI678987 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .l-u 1 to 506 506 to 1 exact tiling clone,   506/506
(100 %)
0 diff
(100 %id)
BG506709 lung .m 1 to 652 1 to 649 exact tiling clone,   649/649
(100 %)
9 diff
(98.7 %id)
AW816628 stomach .n 1 to 412 1 to 409 I2H G9V G10A S11P K12R ... tiling clone,   409/409
(100 %)
7 diff
(98.3 %id)
BG397052 melanotic melanoma, skin .o 1 to 785 1 to 790 exact tiling clone,   790/947
(83 %)
15 diff
(98.5 %id)
BG334908 melanotic melanoma, skin .o 1 to 471 1 to 473 exact AAA   473/986
(47 %)
9 diff
(99.1 %id)
BE389445 endometrium, adenocarcinoma cell line, uterus .o 21 to 612 1 to 591   available from MGC,   591/712
(83 %)
18 diff
(97.5 %id)
AK090649 cerebellum .o 199 to 2749 1 to 2550   tiling clone, available from FLJ,   2550/2550
(100 %)
10 diff
(99.7 %id)
DA054605 cerebellum .o 200 to 761 2 to 563   capped   562/562
(100 %)
4 diff
(99.3 %id)
DA057126 cerebellum .o 308 to 896 2 to 588   tiling clone, capped   587/587
(100 %)
13 diff
(97.8 %id)
AI143242 heart .o 420 to 872 453 to 1   tiling clone,   453/453
(100 %)
0 diff
(100 %id)
DA949850 Spleen .o 945 to 1516 2 to 572   tiling clone, capped   571/571
(100 %)
5 diff
(99.2 %id)
BG999276 head_normal .o 1476 to 1896 496 to 77       420/514
(81 %)
0 diff
(100 %id)
AA458804   .o 1595 to 1985 1 to 392     Submitted on the opposite strand 392/392
(100 %)
3 diff
(99.3 %id)
AV748165 Pituitary .o 2134 to 2673 1 to 535       535/551
(97 %)
7 diff
(98.8 %id)
DB296472 cerebellum .o 2207 to 2749 543 to 1       543/543
(100 %)
0 diff
(100 %id)
BI044501 ovary .o 2354 to 2749 406 to 7       400/406
(98 %)
0 diff
(100 %id)
BX114573 placenta .o 2524 to 3281 1 to 757   tiling clone,   757/757
(100 %)
1 diff
(99.9 %id)
H13551 placenta .o 2524 to 2847 1 to 330       330/463
(71 %)
7 diff
(98.5 %id)
BF109332 pooled .o 2803 to 3312 510 to 1   tiling clone,   510/510
(100 %)
0 diff
(100 %id)
AA457197   .o 2860 to 3267 406 to 1     Submitted on the opposite strand 406/406
(100 %)
2 diff
(99.6 %id)
H13552 placenta .o 2952 to 3292 342 to 1       342/342
(100 %)
1 diff
(99.8 %id)
AI915612 pooled .o 2964 to 3312 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
DW412910 Liver .o 3014 to 3307 17 to 310   AAA Possibly primed on the genome, locally A rich (25/29 A in genome downstream of last aligned base) 294/310
(94 %)
6 diff
(98.1 %id)
DA139525 alzheimer cortex .p 1 to 508 2 to 508 exact tiling clone, capped   507/507
(100 %)
2 diff
(99.7 %id)
CN275349 embryonic stem cells, DMSO-treated H9 cellline .p 187 to 764 1 to 577   tiling clone,   577/577
(100 %)
7 diff
(98.8 %id)
BE622361 melanotic melanoma, skin .p 459 to 1181 1 to 718   tiling clone,   718/928
(77 %)
11 diff
(98.9 %id)
AA725901   .p 1161 to 1530 372 to 3   tiling clone,   370/372
(99 %)
0 diff
(100 %id)
DB301233 alzheimer cortex .p 1282 to 1487 206 to 1       206/206
(100 %)
2 diff
(99.1 %id)
DB256755 uterus .q-u 1 to 554 2 to 555 exact tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
AK098287 uterus .q-u 11 to 1976 12 to 1976 exact tiling clone, available from FLJ,   1965/1965
(100 %)
18 diff
(99.1 %id)
AW135711   .q-u 234 to 526 12 to 304 exact   Submitted on the opposite strand 293/304
(96 %)
0 diff
(100 %id)
BG989516 head_neck .q-u 400 to 674 10 to 281       272/284
(95 %)
8 diff
(97.2 %id)
AA514472 colon .q-u 980 to 1175 196 to 1   tiling clone,   196/196
(100 %)
0 diff
(100 %id)
CK002882 brain/CNS, Human Brain - Cerebellar Cortex .q-u 1143 to 1826 1 to 681   tiling clone,   681/682
(99 %)
9 diff
(98.7 %id)
BQ711995 Spleen .r-u 1 to 555 1 to 558 K18T V41L Y43* tiling clone, AAA   558/569
(98 %)
12 diff
(97.9 %id)
BC042908 Spleen .r-u 167 to 1447 1 to 1281 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1281/1281
(100 %)
2 diff
(99.9 %id)
BM914492 Spleen .r-u 169 to 1112 1 to 959 exact available from MGC,   959/1009
(95 %)
23 diff
(97.8 %id)
BU659139 blood .r-u 251 to 895 10 to 654 exact     645/654
(98 %)
6 diff
(99.1 %id)
BU659161 blood .r-u 251 to 765 9 to 523 exact     515/523
(98 %)
6 diff
(98.9 %id)
BQ712332 Spleen .r-u 585 to 1417 1 to 838   tiling clone,   838/839
(99 %)
26 diff
(97.0 %id)
BF888880 testis_normal .r-u 822 to 936 130 to 17     Submitted on the opposite strand 114/130
(87 %)
0 diff
(100 %id)
BF888991 testis_normal .r-u 822 to 936 132 to 17     Submitted on the opposite strand 116/132
(87 %)
0 diff
(100 %id)
BG960371 colon .s-u 1 to 509 1 to 509 P17X G35V R50C tiling clone,   509/509
(100 %)
19 diff
(96.3 %id)
BI019419 marrow .t-u 1 to 419 423 to 5 P8L S28R tiling clone,   419/423
(99 %)
0 diff
(100 %id)
BI021836 marrow .u-u 1 to 322 26 to 347 E2Q T3P G4V C5W V6A ... tiling clone,   322/347
(92 %)
6 diff
(98.3 %id)
AK021460 whole embryo, mainly head Gene RRP12andRPL34P20, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BX089217   Gene RRP12andRPL34P20, variant not shown         Suspected internal deletion, this clone was ignored    
AI685670 Prostate Gene RRP12andRPL34P20, variant not shown         Suspected internal deletion, this clone was ignored    
AI863785 colon, colon tumor, RER+ Gene RRP12andRPL34P20, variant not shown         Suspected internal deletion, this clone was ignored    
BE466838 pooled germ cell tumors Gene RRP12andRPL34P20, variant not shown         This clone was ignored    
BC009463 Uterus, endometrium adenocarcinoma Gene RRP12andRPL34P20, variant not shown       available from MGC, AAA This clone was ignored    
BG341527 B-cells, primary B-cells from tonsils (cell line) Gene RRP12andRPL34P20, variant not shown         Suspected internal deletion, this clone was ignored    
BQ440704 melanotic melanoma, skin Gene RRP12andRPL34P20, variant not shown         Suspected internal deletion, this clone was ignored    
CF618910 Pooled Chondrosarcoma Tumor cells Gene RRP12andRPL34P20, variant not shown         This clone was ignored    
DB095964 testis Gene RRP12andRPL34P20, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m, .n, .o, .p, .q-u, .r-u, .s-u, .t-u, .u-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI