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Gene FAM21CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
357 supporting clones for gene FAM21C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_015262.2   .a 1 to 4644 1 to 4644 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4644/4644
(100 %)
0 diff
(100 %id)
AK291430 brain .a 13 to 4348 1 to 4336   tiling clone,   4336/4336
(100 %)
3 diff
(100.0 %id)
AB011164 brain .a 20 to 4642 1 to 4623   tiling clone, available from KIAA,   4623/4623
(100 %)
9 diff
(99.9 %id)
AK298385 Kidney .a 336 to 2885 1 to 2550   tiling clone,   2550/2550
(100 %)
5 diff
(99.9 %id)
BM562755.
matches multiple genes
duodenal adenocarcinoma, cell line, small intestine .a 2286 to 3202 38 to 971   tiling clone, also hits gene FAM21A, FAM21B 934/1067
(87 %)
28 diff
(97.4 %id)
DB168139.
matches multiple genes
kidney, tumor tissue .a 2300 to 2845 2 to 549   capped also hits gene FAM21A, FAM21B 548/549
(99 %)
3 diff
(99.5 %id)
BU902574 leiomyosarcoma, uterus .a 2398 to 3308 1 to 913       913/914
(99 %)
14 diff
(98.5 %id)
DA685665   .a 2409 to 2955 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
NM_001169106.1   .b 1 to 4521 1 to 4521 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4521/4521
(100 %)
0 diff
(100 %id)
BC150611 Testicle, PCR rescued clones .b 36 to 4362 1 to 4327   tiling clone,   4327/4327
(100 %)
15 diff
(99.7 %id)
BM126842.
matches multiple genes
Islets of Langerhans, Pancreas .b 546 to 1099 1 to 554     also hits gene FAM21B 554/554
(100 %)
2 diff
(99.7 %id)
CX757937.
matches multiple genes
Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 572 to 1290 36 to 753     Submitted on the opposite strand, also hits gene FAM21B 718/754
(95 %)
14 diff
(98.2 %id)
DA325410 hippocampus .b 655 to 1186 2 to 533   capped   532/532
(100 %)
2 diff
(99.7 %id)
CR998272.
matches multiple genes
T-Lymphocytes .b 672 to 1194 1 to 523     also hits gene FAM21A, FAM21B 523/525
(99 %)
16 diff
(97.0 %id)
BX437654 thymus .b 694 to 1583 1 to 890       890/890
(100 %)
2 diff
(99.8 %id)
DA832422 placenta .b 709 to 1336 2 to 629   capped   628/628
(100 %)
5 diff
(99.3 %id)
CU454087 epidermis .b 786 to 1527 755 to 14   tiling clone, Submitted on the opposite strand 742/755
(98 %)
0 diff
(100 %id)
TI_1971556747   .b 843 to 1869 1023 to 9       1015/1228
(82 %)
24 diff
(98.1 %id)
AU141730 thyroid gland .b 931 to 1667 2 to 741   tiling clone, capped   740/849
(87 %)
13 diff
(98.5 %id)
DB219301 trachea .b 965 to 1511 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB219308 trachea .b 965 to 1516 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BF094811 uterus_tumor .b 1013 to 1220 35 to 241       207/241
(85 %)
7 diff
(97.1 %id)
CB133020.
matches multiple genes
Liver .b 1021 to 1185 1 to 167     also hits gene FAM21A 167/167
(100 %)
2 diff
(98.9 %id)
BU428894.
matches multiple genes
lymph .b 1039 to 1382 8 to 351     also hits gene FAM21A, FAM21B 344/351
(98 %)
2 diff
(99.5 %id)
TI_154149783   .b 1039 to 1539 61 to 565       505/530
(95 %)
24 diff
(95.5 %id)
TI_1971555067.
matches multiple genes
  .b 1144 to 2317 1 to 1166     also hits gene FAM21B 1166/1258
(92 %)
22 diff
(98.3 %id)
TI_1971557789   .b 1196 to 2360 1167 to 12       1159/1234
(93 %)
27 diff
(97.9 %id)
TI_1971555061   .b 1602 to 2718 1 to 1109       1109/1274
(87 %)
15 diff
(98.9 %id)
BE744488.
matches multiple genes
adenocarcinoma cell line, ovary .b 1606 to 2355 1 to 744     also hits gene FAM21B 744/744
(100 %)
14 diff
(98.2 %id)
CN314889 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1624 to 2323 1 to 700       700/700
(100 %)
2 diff
(99.8 %id)
BX401132   .b 1719 to 2316 1 to 598       598/865
(69 %)
11 diff
(98.8 %id)
BQ925312 large cell carcinoma, lung .b 1774 to 2700 1 to 928       928/928
(100 %)
16 diff
(98.3 %id)
DA074480 cerebellum .b 1828 to 2405 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA091647 cerebellum .b 1834 to 2352 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DB174481 kidney, tumor tissue .b 1834 to 2393 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AU130037   .b 1841 to 2688 2 to 850   capped   849/852
(99 %)
11 diff
(98.8 %id)
BG752272.
matches multiple genes
eye, normal pigmented retinal epithelium .b 1859 to 2466 1 to 607     also hits gene FAM21B 607/857
(70 %)
13 diff
(98.5 %id)
DA815024.
matches multiple genes
  .b 1865 to 2437 2 to 574   capped also hits gene FAM21B 573/573
(100 %)
2 diff
(99.7 %id)
CN314877.
matches multiple genes
embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1876 to 2586 1 to 709     also hits gene FAM21B 709/709
(100 %)
3 diff
(99.6 %id)
BG754627 B-cells, primary B-cells from tonsils (cell line) .b 1893 to 2428 1 to 541       541/939
(57 %)
13 diff
(98.7 %id)
TI_1971556737.
matches multiple genes
  .b 1904 to 3097 1190 to 13   tiling clone, also hits gene FAM21A, FAM21B 1182/1287
(91 %)
25 diff
(98.1 %id)
BM010671.
matches multiple genes
amelanotic melanoma, cell line, skin .b 1914 to 2346 1 to 438     also hits gene FAM21A, FAM21B 438/943
(46 %)
8 diff
(99.2 %id)
BM555921.
matches multiple genes
amelanotic melanoma, cell line, skin .b 1915 to 2720 1 to 813   AAA also hits gene FAM21A, FAM21B 813/1127
(72 %)
15 diff
(98.7 %id)
DB483680.
matches multiple genes
hippocampus .b 1986 to 2434 1 to 449     also hits gene FAM21A, FAM21B 449/449
(100 %)
2 diff
(99.6 %id)
BI761542.
matches multiple genes
pooled colon, kidney, stomach .b 1989 to 2708 1 to 717     also hits gene FAM21A, FAM21B 717/717
(100 %)
8 diff
(98.9 %id)
TI_57149347.
matches multiple genes
  .b 1991 to 2708 30 to 744     also hits gene FAM21A, FAM21B 715/744
(96 %)
9 diff
(98.8 %id)
DB054433.
matches multiple genes
testis .b 1996 to 2555 2 to 562   capped also hits gene FAM21A, FAM21B 561/561
(100 %)
2 diff
(99.7 %id)
BF846584 lung_normal .b 2061 to 2547 1 to 487       487/499
(97 %)
5 diff
(99.0 %id)
BQ329657 lung_normal .b 2061 to 2547 1 to 487       487/499
(97 %)
5 diff
(99.0 %id)
AA096447.
matches multiple genes
  .b 2119 to 2307 1 to 187     also hits gene FAM21A 187/187
(100 %)
6 diff
(96.8 %id)
N55764.
matches multiple genes
  .b 2121 to 2396 1 to 271     also hits gene FAM21A, FAM21B 271/289
(93 %)
25 diff
(91.4 %id)
BM738254.
matches multiple genes
Ascites, stomach .b 2139 to 2693 1 to 554     also hits gene FAM21B 554/554
(100 %)
9 diff
(98.4 %id)
TI_1971555069   .b 2151 to 3203 17 to 1070       1054/1238
(85 %)
9 diff
(99.3 %id)
DA100553.
matches multiple genes
cerebellum .b 2167 to 2756 2 to 591   capped also hits gene FAM21A, FAM21B 590/590
(100 %)
1 diff
(99.9 %id)
CD692526.
matches multiple genes
normal nasopharynx .b 2177 to 2448 31 to 302     also hits gene FAM21A, FAM21B 272/302
(90 %)
7 diff
(97.7 %id)
AL525607.
matches multiple genes
brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 2184 to 2549 1 to 373     also hits gene FAM21A 373/430
(86 %)
10 diff
(97.7 %id)
DA518430 brain .b 2205 to 2755 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA502885 brain .b 2206 to 2776 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB138512.
matches multiple genes
thymus .b 2206 to 2736 2 to 533   capped also hits gene FAM21A, FAM21B 532/532
(100 %)
2 diff
(99.7 %id)
AA131049.
matches multiple genes
colon, tumor .b 2210 to 2620 1 to 418     also hits gene hakimi 418/422
(99 %)
10 diff
(97.7 %id)
AA248898.
matches multiple genes
  .b 2257 to 2493 1 to 232     also hits gene FAM21A, FAM21B 232/234
(99 %)
11 diff
(95.3 %id)
EC535132.
matches multiple genes
Prostate .b 2259 to 2345 87 to 1     also hits gene FAM21A, FAM21B 87/98
(88 %)
0 diff
(100 %id)
EC466836.
matches multiple genes
Prostate .b 2261 to 2345 84 to 1     also hits gene FAM21A, FAM21B 84/96
(87 %)
0 diff
(100 %id)
AW351826.
matches multiple genes
colon .b 2303 to 2478 1 to 177     also hits gene FAM21A, FAM21B 177/211
(83 %)
9 diff
(95.8 %id)
TI_1971556735.
matches multiple genes
  .b 2589 to 3610 1023 to 5   tiling clone, also hits gene FAM21A 1019/1247
(81 %)
7 diff
(99.5 %id)
TI_1971555071   .b 2682 to 3817 15 to 1136       1122/1212
(92 %)
15 diff
(98.8 %id)
AU152083   .b 3582 to 4159 576 to 1       576/576
(100 %)
16 diff
(97.3 %id)
AU159218 thyroid gland .b 3994 to 4515 524 to 1   tiling clone,   524/525
(99 %)
19 diff
(96.4 %id)
DB378606 placenta .b 3995 to 4515 519 to 1       519/526
(98 %)
20 diff
(96.2 %id)
AA130993.
matches multiple genes
colon, tumor .b 3998 to 4517 534 to 5   tiling clone, also hits gene hakimi 530/537
(98 %)
0 diff
(100 %id)
DC424497   .c 1 to 801 19 to 822   tiling clone,   804/804
(100 %)
12 diff
(98.6 %id)
NM_001169107.1   .c 68 to 4486 1 to 4419   RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4419/4419
(100 %)
0 diff
(100 %id)
DC313316 amygdala .c 76 to 651 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DC332462 hippocampus .c 76 to 625 1 to 550       550/550
(100 %)
2 diff
(99.7 %id)
DC340975 thalamus .c 76 to 665 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
DC377094 brain .c 80 to 625 1 to 546       546/546
(100 %)
0 diff
(100 %id)
DC377099 brain .c 80 to 543 1 to 464       464/464
(100 %)
0 diff
(100 %id)
DA226861 brain .c 91 to 645 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA584141 lung .c 102 to 694 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
AK303048 testis .c 104 to 4143 1 to 4040   tiling clone,   4040/4040
(100 %)
3 diff
(100.0 %id)
DB727702 testis .c 104 to 793 1 to 686       686/686
(100 %)
13 diff
(98.2 %id)
DB099823 testis .c 105 to 667 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB289127 uterus .c 107 to 676 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA337665 hippocampus .c 116 to 716 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DB450700 testis .c 116 to 835 1 to 718       720/720
(100 %)
14 diff
(98.1 %id)
DA685262   .c 121 to 662 2 to 544   capped   543/543
(100 %)
4 diff
(99.3 %id)
DB129389 thymus .c 121 to 641 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
CN314886 embryonic stem cells, cell lines H1, H7, andH9 .c 123 to 831 1 to 709       709/709
(100 %)
2 diff
(99.8 %id)
DR155842 human embryonic stem cells differentiated toan early endodermal cell type .c 123 to 861 1 to 739       739/739
(100 %)
1 diff
(99.9 %id)
DR003447 fetal brain .c 123 to 807 9 to 694       686/695
(98 %)
7 diff
(99.0 %id)
DA765222 tongue .c 135 to 692 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA118447 cerebellum .c 147 to 691 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA112938 cerebellum .c 149 to 895 2 to 542   capped   513/541
(94 %)
11 diff
(98.0 %id)
CD652042 Embryonic Stem cells .c 156 to 911 11 to 763       753/817
(92 %)
14 diff
(98.3 %id)
BU500159   .c 160 to 1033 1 to 876       876/907
(96 %)
9 diff
(99.1 %id)
CX165176 human embryonic stem cells differentiated toan early endodermal cell type .c 162 to 988 7 to 832       826/832
(99 %)
7 diff
(99.2 %id)
CN314882 embryonic stem cells, cell lines H1, H7, andH9 .c 187 to 897 1 to 711       711/711
(100 %)
1 diff
(99.9 %id)
CN314878.
matches multiple genes
embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 211 to 912 1 to 702     also hits gene FAM21A 702/705
(99 %)
4 diff
(99.5 %id)
AV748024 Pituitary .c 322 to 774 1 to 452       456/490
(93 %)
13 diff
(97.4 %id)
DC362471 Kidney .c 403 to 969 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
BF991255.
matches multiple genes
placenta_normal .c 511 to 837 1 to 327     also hits gene FAM21A, FAM21B 327/327
(100 %)
3 diff
(99.1 %id)
CA395389 eye, RPE/choroid .c 592 to 1067 1 to 476       476/476
(100 %)
0 diff
(100 %id)
CU456675 epidermis .c 798 to 1522 738 to 14     Submitted on the opposite strand 725/749
(96 %)
7 diff
(99.1 %id)
TI_1971557793   .c 1135 to 2176 1044 to 5   tiling clone,   1040/1227
(84 %)
7 diff
(99.5 %id)
BF759412 colon .c 1167 to 1617 1 to 451       451/451
(100 %)
13 diff
(97.2 %id)
CF138428.
matches multiple genes
lymph .c 1168 to 1398 1 to 231     also hits gene FAM21B 231/231
(100 %)
7 diff
(97.0 %id)
CN314880.
matches multiple genes
embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1234 to 1596 1 to 363     also hits gene FAM21A, FAM21B 363/363
(100 %)
2 diff
(99.5 %id)
DA822629.
matches multiple genes
pericardium .c 1235 to 1793 2 to 560   capped also hits gene FAM21B 559/559
(100 %)
2 diff
(99.7 %id)
BQ336195 marrow .c 1252 to 1454 226 to 18       212/226
(93 %)
10 diff
(95.6 %id)
BE140808 head_neck .c 1256 to 1460 37 to 241       205/242
(84 %)
13 diff
(94.7 %id)
BE140815 head_neck .c 1261 to 1454 1 to 194       194/197
(98 %)
3 diff
(98.5 %id)
AW578762.
matches multiple genes
colon .c 1382 to 1836 12 to 469     also hits gene FAM21B 458/495
(92 %)
12 diff
(97.6 %id)
AW753707.
matches multiple genes
colon .c 1439 to 1836 18 to 420     also hits gene FAM21A 404/434
(93 %)
34 diff
(92.2 %id)
DA020223   .c 1491 to 2051 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
AA322645 brain, cerebellum .c 1653 to 1972 1 to 320       320/320
(100 %)
6 diff
(98.2 %id)
AW960874   .c 1662 to 2134 1 to 475       475/496
(95 %)
15 diff
(97.0 %id)
DA432747 cord Blood .c 1685 to 2242 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BQ028414 mixed .c 1685 to 2251 585 to 16   AAA   570/570
(100 %)
3 diff
(99.5 %id)
DA855879.
matches multiple genes
placenta .c 1725 to 2174 2 to 452   capped also hits gene FAM21A, FAM21B 451/456
(98 %)
8 diff
(98.3 %id)
AW362874 colon .c 1763 to 2147 399 to 16       384/406
(94 %)
6 diff
(98.6 %id)
EB388888 eye, optic nerve .c 2334 to 3065 1 to 732       732/732
(100 %)
0 diff
(100 %id)
CB152199 brain .c 2530 to 3206 1 to 677       677/677
(100 %)
0 diff
(100 %id)
CN314876 embryonic stem cells, cell lines H1, H7, andH9 .c 2534 to 2729 1 to 196       196/196
(100 %)
1 diff
(99.5 %id)
TI_2194697606.
matches multiple genes
  .c 2566 to 3575 1007 to 5   tiling clone, also hits gene FAM21A, FAM21B 1003/1242
(80 %)
9 diff
(99.3 %id)
DA696215.
matches multiple genes
  .c 2569 to 3128 2 to 561   tiling clone, capped also hits gene FAM21A, FAM21B 560/560
(100 %)
4 diff
(99.3 %id)
AL044600.
matches multiple genes
testis .c 2596 to 2856 50 to 311     also hits gene FAM21A 262/311
(84 %)
8 diff
(97.5 %id)
CX752454.
matches multiple genes
Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 2668 to 3433 1 to 764     Submitted on the opposite strand, also hits gene FAM21A, FAM21B 764/764
(100 %)
8 diff
(99.0 %id)
DA829987 placenta .c 2691 to 3395 2 to 709   capped   708/708
(100 %)
7 diff
(99.1 %id)
EB386100 eye, optic nerve .c 2733 to 3570 1 to 838   tiling clone,   838/838
(100 %)
6 diff
(99.3 %id)
AA323441.
matches multiple genes
brain, cerebellum .c 2760 to 2930 1 to 171   tiling clone, also hits gene FAM21A, FAM21B 171/171
(100 %)
0 diff
(100 %id)
BG290273.
matches multiple genes
bladder, transitional cell papilloma, cell line .c 2770 to 3382 1 to 616     also hits gene FAM21A, FAM21B 616/873
(70 %)
31 diff
(96.5 %id)
AL536270.
matches multiple genes
brain, fetal brain .c 2771 to 3597 1 to 828   fully sequenced, also hits gene hakimi 828/828
(100 %)
1 diff
(99.9 %id)
BU430562.
matches multiple genes
lymph .c 2771 to 3209 1 to 439     also hits gene FAM21A, FAM21B 439/439
(100 %)
7 diff
(98.5 %id)
TI_154151966   .c 2778 to 3251 90 to 563       474/474
(100 %)
3 diff
(99.4 %id)
BQ056898 lymph, lymphoma, cell line .c 2793 to 3753 1 to 969       969/973
(99 %)
18 diff
(98.2 %id)
BQ057553 lymph, lymphoma, cell line .c 2793 to 3648 1 to 860       860/1025
(83 %)
17 diff
(98.4 %id)
BQ059202 lymph, lymphoma, cell line .c 2793 to 3606 1 to 817       817/940
(86 %)
12 diff
(98.8 %id)
BQ643086 lymph, lymphoma, cell line .c 2793 to 3665 1 to 878       878/938
(93 %)
19 diff
(98.0 %id)
BE093025.
matches multiple genes
breast .c 2808 to 3276 481 to 14   tiling clone, Submitted on the opposite strand, also hits gene FAM21A, FAM21B 468/481
(97 %)
3 diff
(99.4 %id)
DA425655 colon .c 2813 to 3368 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
M78977.
matches multiple genes
  .c 2857 to 3145 1 to 290     also hits gene FAM21A, FAM21B 290/290
(100 %)
3 diff
(99.0 %id)
BG959933.
matches multiple genes
colon .c 2858 to 3228 47 to 416     also hits gene FAM21A, FAM21B 370/418
(88 %)
8 diff
(98.1 %id)
BC006456 Lung, small cell carcinoma .c 2915 to 4124 1 to 1210   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1210/1210
(100 %)
0 diff
(100 %id)
BU595057 mixed (pool of 40 RNAs) .c 2920 to 3717 1 to 800       800/800
(100 %)
12 diff
(98.5 %id)
EC502459.
matches multiple genes
Prostate .c 2929 to 3027 98 to 1     also hits gene FAM21A, FAM21B 98/98
(100 %)
1 diff
(99.0 %id)
BE265196 lung, small cell carcinoma .c 2934 to 3543 1 to 610   available from MGC,   610/610
(100 %)
0 diff
(100 %id)
BF899147.
matches multiple genes
marrow .c 2967 to 3177 222 to 13     Submitted on the opposite strand, also hits gene FAM21A, FAM21B 210/222
(94 %)
0 diff
(100 %id)
BQ652411 hepatocellular carcinoma, cell line, Liver .c 2968 to 3890 1 to 924       924/924
(100 %)
16 diff
(98.3 %id)
BQ651213 hepatocellular carcinoma, cell line, Liver .c 2968 to 3892 1 to 927       927/928
(99 %)
18 diff
(98.1 %id)
BQ651237 hepatocellular carcinoma, cell line, Liver .c 2968 to 3758 1 to 806       806/979
(82 %)
29 diff
(97.1 %id)
BQ648994 hepatocellular carcinoma, cell line, Liver .c 2987 to 3668 1 to 688       688/893
(77 %)
21 diff
(97.7 %id)
BU619748 Cell Line, Chondrosarcoma .c 2990 to 3745 755 to 1       755/755
(100 %)
7 diff
(99.1 %id)
CR998023.
matches multiple genes
T-Lymphocytes .c 3009 to 3911 1 to 902   tiling clone, also hits gene hakimi 902/904
(99 %)
4 diff
(99.6 %id)
CN277503.
matches multiple genes
embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3022 to 3131 1 to 110     also hits gene FAM21A, FAM21B 110/127
(86 %)
6 diff
(95.3 %id)
W22387.
matches multiple genes
eye, retina .c 3107 to 3606 521 to 25     also hits gene FAM21A, FAM21B 497/601
(82 %)
0 diff
(100 %id)
AW889075 nervous_tumor .c 3113 to 3481 373 to 5       369/373
(98 %)
0 diff
(100 %id)
AW889067 nervous_tumor .c 3124 to 3481 363 to 6       358/363
(98 %)
0 diff
(100 %id)
BQ016045 lung, Metastatic Chondrosarcoma .c 3139 to 3745 607 to 1       607/607
(100 %)
5 diff
(99.2 %id)
BQ477749.
matches multiple genes
insulinoma, Pancreas .c 3185 to 3494 1 to 317     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 317/322
(98 %)
34 diff
(89.5 %id)
BG315360   .c 3190 to 3319 131 to 1       131/133
(98 %)
2 diff
(98.5 %id)
TI_159723695.
matches multiple genes
  .c 3196 to 4124 997 to 83   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 915/997
(91 %)
27 diff
(97.3 %id)
DC427294   .c 3197 to 3740 537 to 1       537/562
(95 %)
13 diff
(97.7 %id)
AA045448.
matches multiple genes
uterus .c 3223 to 3474 1 to 252     also hits gene hakimi 252/255
(98 %)
5 diff
(98.1 %id)
AW468185 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 3227 to 3727 501 to 1       501/501
(100 %)
1 diff
(99.9 %id)
AA689607 germinal center B cell .c 3229 to 3736 508 to 2       507/508
(99 %)
0 diff
(100 %id)
AA055377 heart .c 3282 to 3699 1 to 420       420/421
(99 %)
5 diff
(98.9 %id)
TI_149309316.
matches multiple genes
  .c 3303 to 4124 902 to 88   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 815/938
(86 %)
7 diff
(99.3 %id)
AA385102 thyroid gland .c 3306 to 3602 1 to 297       297/297
(100 %)
0 diff
(100 %id)
AW966608   .c 3308 to 3884 1 to 583       583/584
(99 %)
20 diff
(96.6 %id)
W89060 liver and spleen .c 3314 to 3739 1 to 430       430/431
(99 %)
11 diff
(97.5 %id)
TI_1971557839.
matches multiple genes
  .c 3319 to 4327 1174 to 183     also hits gene hakimi 992/1258
(78 %)
25 diff
(98.1 %id)
CF144337.
matches multiple genes
CNCAP(3)T-225 cell line, Prostate .c 3338 to 3833 1 to 496     also hits gene hakimi 496/496
(100 %)
7 diff
(98.6 %id)
CF144417 CNCAP(3)T-225 cell line, Prostate .c 3338 to 3845 1 to 508       508/508
(100 %)
4 diff
(99.3 %id)
TI_154176388   .c 3345 to 3916 93 to 669       577/1395
(41 %)
19 diff
(98.7 %id)
TI_154176484.
matches multiple genes
  .c 3345 to 4079 80 to 817     also hits gene hakimi 738/1105
(66 %)
39 diff
(96.5 %id)
W67699 heart .c 3346 to 3934 1 to 588   fully sequenced,   588/588
(100 %)
8 diff
(98.7 %id)
W67335.
matches multiple genes
heart .c 3346 to 3584 1 to 238     also hits gene hakimi 238/238
(100 %)
1 diff
(99.6 %id)
BF957803.
matches multiple genes
nervous_normal .c 3387 to 3789 411 to 6     also hits gene FAM21A, FAM21B 413/411
(100 %)
16 diff
(96.2 %id)
BU687724.
matches multiple genes
lung .c 3387 to 4124 756 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 738/741
(99 %)
0 diff
(100 %id)
CA309916.
matches multiple genes
Alveolar Macrophage, lung .c 3391 to 4124 753 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 735/742
(99 %)
1 diff
(99.9 %id)
BQ614475 insulinoma, Pancreas .c 3396 to 3990 8 to 601       594/601
(98 %)
7 diff
(98.9 %id)
BU947972.
matches multiple genes
insulinoma, Pancreas .c 3396 to 3961 8 to 572   fully sequenced, also hits gene hakimi 565/572
(98 %)
7 diff
(98.8 %id)
BF945267 nervous_normal .c 3399 to 3796 26 to 415       390/415
(93 %)
9 diff
(97.9 %id)
BC039561 Cervix, carcinoma .c 3418 to 3758 1 to 342   available from MGC, AAA   342/358
(95 %)
6 diff
(98.4 %id)
BI255254 cervical carcinoma cell line, cervix .c 3418 to 3758 1 to 343   available from MGC, AAA   343/359
(95 %)
7 diff
(98.1 %id)
CA945210.
matches multiple genes
Human Lung Epithelial cells, lung .c 3424 to 4124 719 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 701/701
(100 %)
1 diff
(99.9 %id)
W96102 heart .c 3464 to 3896 1 to 436       436/436
(100 %)
4 diff
(99.1 %id)
TI_1971555073   .c 3486 to 4327 16 to 857   tiling clone,   842/1168
(72 %)
7 diff
(99.5 %id)
BQ675387.
matches multiple genes
epidermoid carcinoma, cell line, salivary gland .c 3546 to 4398 1 to 861     also hits gene hakimi 861/965
(89 %)
19 diff
(98.1 %id)
BQ673102.
matches multiple genes
epidermoid carcinoma, cell line, salivary gland .c 3546 to 4447 1 to 905   tiling clone, also hits gene hakimi 905/910
(99 %)
16 diff
(98.3 %id)
W73746.
matches multiple genes
heart .c 3550 to 4017 1 to 454   fully sequenced, also hits gene hakimi 454/454
(100 %)
0 diff
(100 %id)
AL536269.
matches multiple genes
brain, fetal brain .c 3567 to 4462 896 to 1   fully sequenced, also hits gene hakimi 896/896
(100 %)
11 diff
(98.8 %id)
TI_154036010   .c 3568 to 4124 626 to 69   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 558/765
(72 %)
6 diff
(99.3 %id)
BM710794 eye, fetal eyes .c 3577 to 3991 1 to 415   fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 415/415
(100 %)
0 diff
(100 %id)
BQ013241 placenta .c 3593 to 4124 550 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 532/532
(100 %)
0 diff
(100 %id)
AA536185 colon .c 3637 to 4124 491 to 3       489/491
(99 %)
15 diff
(97.0 %id)
AI564502 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 3650 to 4124 476 to 2       475/476
(99 %)
0 diff
(100 %id)
BM930297.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3670 to 4124 1 to 455   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 455/455
(100 %)
0 diff
(100 %id)
BQ188955 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3670 to 4124 1 to 455   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 455/455
(100 %)
2 diff
(99.6 %id)
TI_151733765   .c 3670 to 4124 539 to 85   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 455/1005
(45 %)
2 diff
(99.9 %id)
CA444179 lung, Metastatic Chondrosarcoma .c 3672 to 4124 471 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 453/453
(100 %)
1 diff
(99.8 %id)
TI_154130867.
matches multiple genes
  .c 3699 to 4486 869 to 83   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 787/1002
(78 %)
5 diff
(99.6 %id)
CK300318 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3713 to 4124 430 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 412/412
(100 %)
1 diff
(99.8 %id)
CA417912.
matches multiple genes
Bone, Human Chondrosarcoma Cell Line .c 3722 to 4486 780 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 764/764
(100 %)
5 diff
(99.4 %id)
AA045067.
matches multiple genes
uterus .c 3729 to 4124 397 to 1     also hits gene hakimi 397/398
(99 %)
1 diff
(99.8 %id)
AI266452 2 pooled tumors (clear cell type), Kidney .c 3733 to 4124 397 to 6       392/397
(98 %)
0 diff
(100 %id)
AI826919 normal prostate, Prostate .c 3738 to 4124 387 to 1       387/387
(100 %)
2 diff
(99.5 %id)
BE005599 breast_normal .c 3739 to 4077 341 to 2     Submitted on the opposite strand 340/343
(99 %)
2 diff
(99.5 %id)
W68158 heart .c 3904 to 4484 575 to 1   fully sequenced,   575/575
(100 %)
12 diff
(98.0 %id)
DB374966 placenta .c 3933 to 4477 545 to 4       542/550
(98 %)
0 diff
(100 %id)
BM667621 eye, fetal eyes .c 3961 to 4480 536 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 520/520
(100 %)
0 diff
(100 %id)
W73798.
matches multiple genes
heart .c 3987 to 4486 495 to 1   tiling clone, fully sequenced, also hits gene hakimi 495/495
(100 %)
7 diff
(98.6 %id)
BQ477336.
matches multiple genes
insulinoma, Pancreas .c 4025 to 4484 475 to 16   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 460/460
(100 %)
0 diff
(100 %id)
W67225.
matches multiple genes
heart .c 4038 to 4482 447 to 3     also hits gene hakimi 445/447
(99 %)
0 diff
(100 %id)
W88944 liver and spleen .c 4064 to 4480 417 to 1       417/417
(100 %)
0 diff
(100 %id)
W96103 heart .c 4089 to 4480 395 to 1       395/395
(100 %)
4 diff
(99.0 %id)
AA055889 heart .c 4118 to 4480 364 to 1       364/364
(100 %)
2 diff
(99.5 %id)
AK293929 cerebellum .d 1 to 4095 1 to 3775 N66S S73P F541L V723I T963S tiling clone,   3747/3775
(99 %)
24 diff
(99.4 %id)
AL712619 human skeletal muscle .d 165 to 860 18 to 712   tiling clone,   695/712
(97 %)
10 diff
(98.6 %id)
DA233779 brain .d 535 to 1094 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
CA390432.
matches multiple genes
eye, RPE/choroid .d 1431 to 1842 1 to 412   tiling clone, also hits gene FAM21B 412/412
(100 %)
2 diff
(99.6 %id)
BI857264.
matches multiple genes
breast, mammary adenocarcinoma, cell line .d 1431 to 2251 1 to 826   tiling clone, also hits gene FAM21B 826/828
(99 %)
14 diff
(98.4 %id)
TI_57186936   .d 1431 to 2251 58 to 883       826/828
(99 %)
14 diff
(98.4 %id)
AK001545   .d 1611 to 4116 1 to 2506   tiling clone, available from FLJ,   2506/2506
(100 %)
3 diff
(99.9 %id)
CX762870.
matches multiple genes
Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 2030 to 2834 15 to 807   tiling clone, Submitted on the opposite strand, also hits gene FAM21A, FAM21B 796/818
(97 %)
28 diff
(96.6 %id)
AU130054   .d 2056 to 2803 2 to 750   tiling clone, capped   749/749
(100 %)
5 diff
(99.4 %id)
BX957086.
matches multiple genes
  .d 2178 to 2825 1 to 648     also hits gene FAM21B 648/648
(100 %)
9 diff
(98.7 %id)
CD699165.
matches multiple genes
normal nasopharynx .d 2183 to 2776 45 to 637     also hits gene FAM21A, FAM21B 593/637
(93 %)
10 diff
(98.5 %id)
BG396204 eye, retinoblastoma .d 2271 to 3069 1 to 779       783/953
(82 %)
22 diff
(97.7 %id)
BG394516.
matches multiple genes
eye, retinoblastoma .d 2272 to 2974 1 to 705     also hits gene FAM21B 705/833
(84 %)
19 diff
(97.8 %id)
BF568195 epithelioid carcinoma cell line, Pancreas .d 2325 to 3160 1 to 833       833/1029
(80 %)
36 diff
(96.6 %id)
BQ421193 epithelioid carcinoma, Pancreas .d 2351 to 3097 1 to 751   tiling clone,   751/768
(97 %)
14 diff
(98.2 %id)
AU125368   .d 2419 to 3126 2 to 708   capped   707/707
(100 %)
5 diff
(99.3 %id)
CN314884.
matches multiple genes
embryonic stem cells, cell lines H1, H7, andH9 .d 2459 to 3237 13 to 791     also hits gene FAM21A, FAM21B 779/793
(98 %)
11 diff
(98.7 %id)
CB109186.
matches multiple genes
Liver .d 2470 to 2993 1 to 524     also hits gene FAM21A, FAM21B 524/524
(100 %)
2 diff
(99.7 %id)
CB109621.
matches multiple genes
Liver .d 2470 to 2974 1 to 505     also hits gene FAM21A, FAM21B 505/505
(100 %)
4 diff
(99.3 %id)
CB109885.
matches multiple genes
Liver .d 2470 to 2971 1 to 502     also hits gene FAM21A, FAM21B 502/502
(100 %)
5 diff
(99.1 %id)
TI_149283373   .d 2471 to 3208 61 to 796     Submitted on the opposite strand 736/798
(92 %)
23 diff
(97.2 %id)
CB854566.
matches multiple genes
lung, Primary Lung Epithelial Cells .d 2471 to 3071 18 to 618     Submitted on the opposite strand, also hits gene FAM21B 601/618
(97 %)
8 diff
(98.8 %id)
BE745521 adenocarcinoma cell line, ovary .d 2478 to 3294 1 to 810       812/890
(91 %)
27 diff
(97.0 %id)
TI_149283361.
matches multiple genes
  .d 2495 to 3160 89 to 754     Submitted on the opposite strand, also hits gene FAM21B 666/780
(85 %)
26 diff
(96.7 %id)
CN314873 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2507 to 3125 1 to 619       619/619
(100 %)
6 diff
(99.1 %id)
BG770695.
matches multiple genes
melanotic melanoma, high MDR (cell line), skin .d 2547 to 3292 1 to 747     also hits gene FAM21A, FAM21B 747/747
(100 %)
5 diff
(99.4 %id)
BY798154.
matches multiple genes
eye .d 2582 to 3194 1 to 613     also hits gene FAM21B 613/613
(100 %)
9 diff
(98.6 %id)
BG390782.
matches multiple genes
embryonal carcinoma, cell line, testis .d 2593 to 3177 1 to 592     also hits gene FAM21B 592/594
(99 %)
6 diff
(99.0 %id)
DR158026 human embryonic stem cells differentiated toan early endodermal cell type .d 2595 to 3431 1 to 837       837/837
(100 %)
4 diff
(99.6 %id)
BE162188.
matches multiple genes
head_neck .d 2619 to 3041 425 to 3     Submitted on the opposite strand, also hits gene FAM21B 423/425
(99 %)
3 diff
(99.3 %id)
BF975442.
matches multiple genes
B-cells, primary B-cells from tonsils (cell line) .d 2621 to 3398 1 to 777     also hits gene FAM21B 777/992
(78 %)
25 diff
(97.5 %id)
BM014747 breast, mammary adenocarcinoma, cell line .d 2622 to 3479 1 to 860       860/885
(97 %)
21 diff
(97.7 %id)
TI_59392801   .d 2622 to 3479 90 to 949       860/885
(97 %)
21 diff
(97.7 %id)
BQ899219.
matches multiple genes
brain, neuroblastoma, cell line .d 2638 to 3444 35 to 849     also hits gene FAM21B 815/932
(87 %)
31 diff
(96.7 %id)
R25262.
matches multiple genes
whole brain .d 2657 to 3019 1 to 370     also hits gene FAM21A 370/482
(76 %)
11 diff
(97.8 %id)
BU956229 adenocarcinoma, cell line, breast .d 2682 to 3552 1 to 877       877/928
(94 %)
22 diff
(97.7 %id)
BU956896 adenocarcinoma, cell line, breast .d 2682 to 3442 1 to 768       768/914
(84 %)
17 diff
(98.2 %id)
CN314887.
matches multiple genes
embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2691 to 3258 5 to 571     also hits gene FAM21B 567/571
(99 %)
9 diff
(98.5 %id)
BF880277.
matches multiple genes
lung_tumor .d 2709 to 3217 8 to 516     also hits gene FAM21A, FAM21B 509/516
(98 %)
6 diff
(98.9 %id)
CB267947.
matches multiple genes
adipose .d 2733 to 2973 1 to 242     also hits gene FAM21A, FAM21B 242/242
(100 %)
9 diff
(96.3 %id)
BE093029.
matches multiple genes
breast .d 2750 to 3265 515 to 1     Submitted on the opposite strand, also hits gene FAM21B 515/515
(100 %)
2 diff
(99.7 %id)
CX783420 human embryonic stem cells .d 2755 to 3617 1 to 863       863/863
(100 %)
0 diff
(100 %id)
W37090.
matches multiple genes
parathyroid gland, parathyroid tumor .d 2764 to 3166 1 to 404   tiling clone, also hits gene FAM21A, hakimi 404/404
(100 %)
7 diff
(98.3 %id)
BF568957 epithelioid carcinoma cell line, Pancreas .d 3771 to 4422 668 to 3       666/971
(68 %)
0 diff
(100 %id)
BE939568.
matches multiple genes
uterus .d 3777 to 4300 523 to 3     also hits gene FAM21A, FAM21B 521/533
(97 %)
0 diff
(100 %id)
AA412107   .d 3789 to 4116 347 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 329/329
(100 %)
1 diff
(99.7 %id)
BM743152.
matches multiple genes
stomach .d 3815 to 4267 1 to 451     also hits gene hakimi 451/451
(100 %)
4 diff
(99.2 %id)
DB516162.
matches multiple genes
testis .d 3851 to 4470 74 to 673     Submitted on the opposite strand, also hits gene hakimi 600/675
(88 %)
36 diff
(94.7 %id)
AA604437 breast .d 3856 to 4097 242 to 1       242/242
(100 %)
0 diff
(100 %id)
BU166188.
matches multiple genes
melanotic melanoma, skin .d 3856 to 4472 1 to 617   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene FAM21A, FAM21B 617/617
(100 %)
5 diff
(99.2 %id)
CN478946.
matches multiple genes
Human Lung Epithelial cells, lung .d 3859 to 4472 631 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 615/615
(100 %)
1 diff
(99.9 %id)
BQ019689.
matches multiple genes
Chondrosarcoma, Left Pubic Bone .d 3860 to 4472 630 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 614/614
(100 %)
2 diff
(99.7 %id)
W19880 parathyroid gland, parathyroid tumor .d 3869 to 4298 1 to 438   fully sequenced,   438/438
(100 %)
10 diff
(97.8 %id)
W21024 lung .d 3869 to 4216 1 to 349   fully sequenced,   349/349
(100 %)
9 diff
(97.5 %id)
AA025735 heart .d 3875 to 4034 1 to 159       159/159
(100 %)
1 diff
(99.4 %id)
TI_1971555063   .d 3876 to 4319 2 to 444       443/1282
(34 %)
5 diff
(99.7 %id)
C00196   .d 3886 to 4194 1 to 309       309/312
(99 %)
2 diff
(99.4 %id)
BM825136.
matches multiple genes
Ascites, stomach .d 3891 to 4476 1 to 586   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene hakimi 586/586
(100 %)
0 diff
(100 %id)
AI820055.
matches multiple genes
lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 3911 to 4472 562 to 1     also hits gene hakimi 562/562
(100 %)
1 diff
(99.9 %id)
AA789263.
matches multiple genes
  .d 3927 to 4423 497 to 1     also hits gene hakimi 497/497
(100 %)
0 diff
(100 %id)
AA741575.
matches multiple genes
germinal center B cell .d 3934 to 4474 548 to 8     also hits gene hakimi 541/548
(98 %)
0 diff
(100 %id)
DB363019   .d 3943 to 4472 527 to 1       527/527
(100 %)
13 diff
(97.6 %id)
BX401131   .d 3947 to 4434 493 to 5       489/708
(69 %)
0 diff
(100 %id)
AA047097.
matches multiple genes
uterus .d 3955 to 4158 1 to 205   fully sequenced, also hits gene hakimi 205/205
(100 %)
0 diff
(100 %id)
AI356516.
matches multiple genes
B-cell, chronic lymphotic leukemia .d 3971 to 4479 510 to 2   tiling clone, also hits gene hakimi 509/510
(99 %)
0 diff
(100 %id)
AL046783.
matches multiple genes
testis .d 3972 to 4478 1 to 507   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base), also hits gene FAM21A, FAM21B 507/507
(100 %)
5 diff
(99.1 %id)
AI129282 uterus .d 4003 to 4467 465 to 1       465/465
(100 %)
0 diff
(100 %id)
W44770.
matches multiple genes
parathyroid gland, parathyroid tumor .d 4005 to 4474 478 to 6     also hits gene FAM21A, hakimi 473/479
(98 %)
0 diff
(100 %id)
DB367328   .d 4005 to 4474 478 to 4       475/480
(98 %)
0 diff
(100 %id)
AW631345 pooled .d 4006 to 4472 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AI570544.
matches multiple genes
anaplastic oligodendroglioma, brain .d 4007 to 4479 474 to 1     also hits gene hakimi 474/474
(100 %)
1 diff
(99.8 %id)
AI376242   .d 4008 to 4474 468 to 2       467/468
(99 %)
0 diff
(100 %id)
AI697152 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 4010 to 4472 463 to 1       463/463
(100 %)
0 diff
(100 %id)
AA814919 germinal center B cell .d 4012 to 4474 470 to 8       463/470
(98 %)
0 diff
(100 %id)
AI148431   .d 4012 to 4472 478 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 461/461
(100 %)
1 diff
(99.8 %id)
AI174597.
matches multiple genes
  .d 4016 to 4476 461 to 1     also hits gene hakimi 461/461
(100 %)
0 diff
(100 %id)
BI324937 Pancreas, Purified pancreatic islet .d 4022 to 4474 461 to 9       453/461
(98 %)
0 diff
(100 %id)
AI021909 liver and spleen .d 4023 to 4473 451 to 1       451/451
(100 %)
0 diff
(100 %id)
AI680335.
matches multiple genes
poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 4027 to 4474 453 to 6     also hits gene FAM21A, FAM21B 448/453
(98 %)
0 diff
(100 %id)
AA157829.
matches multiple genes
colon, tumor .d 4035 to 4471 440 to 1     also hits gene hakimi 440/440
(100 %)
4 diff
(99.1 %id)
AA838071 colon, colon tumor .d 4039 to 4472 434 to 1       434/434
(100 %)
0 diff
(100 %id)
AI127911 uterus .d 4039 to 4472 434 to 1       434/443
(97 %)
0 diff
(100 %id)
AA885451 pooled .d 4049 to 4423 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AI310426 adenocarcinoma, colon .d 4060 to 4474 417 to 3       415/417
(99 %)
0 diff
(100 %id)
AI244747.
matches multiple genes
Kidney .d 4061 to 4473 412 to 1     also hits gene FAM21A, FAM21B 412/412
(100 %)
8 diff
(98.1 %id)
AI289417 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 4061 to 4478 418 to 1       418/418
(100 %)
0 diff
(100 %id)
AA059448 cornea .d 4063 to 4107 1 to 45   fully sequenced,   45/45
(100 %)
0 diff
(100 %id)
AI872313 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 4074 to 4472 399 to 1       399/399
(100 %)
0 diff
(100 %id)
AA059449 cornea .d 4077 to 4472 396 to 1   fully sequenced,   396/396
(100 %)
0 diff
(100 %id)
CB051466.
matches multiple genes
Prostate .d 4079 to 4471 393 to 1     also hits gene FAM21A 393/401
(98 %)
4 diff
(99.1 %id)
AA970720 2 pooled tumors (clear cell type), Kidney .d 4081 to 4474 397 to 4       394/398
(98 %)
0 diff
(100 %id)
AA025603 heart .d 4083 to 4472 400 to 1       400/400
(100 %)
9 diff
(97.8 %id)
AI193943 lung .d 4113 to 4474 364 to 3       362/364
(99 %)
0 diff
(100 %id)
AV706443 adrenal gland .d 4121 to 4472 33 to 385   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 353/385
(91 %)
6 diff
(98.5 %id)
AA047186.
matches multiple genes
uterus .d 4128 to 4472 345 to 1   fully sequenced, also hits gene hakimi 345/345
(100 %)
0 diff
(100 %id)
R46615.
matches multiple genes
whole brain .d 4136 to 4474 349 to 8     also hits gene FAM21A 342/350
(97 %)
0 diff
(100 %id)
AW731896 lung, small cell carcinoma .d 4143 to 4479 338 to 2       337/338
(99 %)
0 diff
(100 %id)
BF525527 brain, glioblastoma with EGFR amplification .d 4158 to 4472 1 to 311   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 311/311
(100 %)
4 diff
(98.8 %id)
AI023041 senescent fibroblast .d 4163 to 4479 325 to 9       317/325
(97 %)
0 diff
(100 %id)
CD105608 brain, Pituitary .d 4171 to 4473 1 to 302       302/987
(30 %)
2 diff
(99.8 %id)
AI879777 Prostate .d 4172 to 4470 301 to 3       299/301
(99 %)
0 diff
(100 %id)
AA368387 placenta .d 4190 to 4479 296 to 7       290/297
(97 %)
0 diff
(100 %id)
N95251 lung .d 4198 to 4474 277 to 2   fully sequenced,   276/277
(99 %)
0 diff
(100 %id)
AI540622 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 4202 to 4474 277 to 5       273/277
(98 %)
0 diff
(100 %id)
AW195222 Kidney .d 4209 to 4474 267 to 2       266/267
(99 %)
0 diff
(100 %id)
AA628804   .d 4215 to 4478 264 to 1       264/264
(100 %)
0 diff
(100 %id)
AI669193 Prostate .d 4232 to 4474 249 to 7       243/249
(97 %)
0 diff
(100 %id)
BG058777 blood, lymphocyte .d 4250 to 4477 234 to 7       228/234
(97 %)
0 diff
(100 %id)
N91282 parathyroid gland, parathyroid tumor .d 4286 to 4474 189 to 1   fully sequenced,   189/189
(100 %)
1 diff
(99.5 %id)
DA557331   .e 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BC053887 Testis, embryonal carcinoma .e 24 to 2195 1 to 2172   tiling clone, available from MGC, AAA   2172/2172
(100 %)
2 diff
(100.0 %id)
BQ229875 embryonal carcinoma, cell line, testis .e 29 to 930 45 to 949   available from MGC,   905/951
(95 %)
18 diff
(98.2 %id)
DB287354 uterus .e 2182 to 2735 2 to 555   tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
DA323716 hippocampus .e 2348 to 2872 2 to 527   tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
DB267445 uterus .f 1 to 484 2 to 486   tiling clone, capped   485/485
(100 %)
11 diff
(97.8 %id)
DC310875 cerebellum .f 283 to 891 1 to 610   tiling clone,   610/610
(100 %)
1 diff
(99.9 %id)
BF528401 anaplastic oligodendroglioma with 1p/19qloss, brain .f 352 to 1061 1 to 702   tiling clone,   703/965
(72 %)
23 diff
(97.7 %id)
DB351867 uterus .f 1884 to 2394 511 to 1   tiling clone,   511/511
(100 %)
0 diff
(100 %id)
DA325878.
matches multiple genes
hippocampus .g 1 to 555 2 to 556   tiling clone, capped also hits gene hakimi 555/555
(100 %)
0 diff
(100 %id)
DB137385 thymus .g 146 to 659 2 to 515   tiling clone, capped   514/514
(100 %)
0 diff
(100 %id)
DA101179 cerebellum .g 192 to 784 2 to 595   tiling clone, capped   594/594
(100 %)
3 diff
(99.5 %id)
BE815891.
matches multiple genes
breast_normal .g 332 to 851 1 to 520   tiling clone, also hits gene FAM21B 520/521
(99 %)
12 diff
(97.7 %id)
BF088679.
matches multiple genes
head_neck .g 337 to 657 7 to 322   tiling clone, also hits gene FAM21B, hukimi 316/322
(98 %)
6 diff
(98.2 %id)
AW753331.
matches multiple genes
colon .g 488 to 897 416 to 7   tiling clone, also hits gene FAM21A, FAM21B 410/416
(98 %)
4 diff
(99.1 %id)
DB309373.
matches multiple genes
hippocampus .g 3316 to 3876 565 to 3   tiling clone, also hits gene hakimi 563/565
(99 %)
0 diff
(100 %id)
CV574525 cornea, eye .h 1 to 587 1 to 587   tiling clone,   587/587
(100 %)
1 diff
(99.9 %id)
DA163142 amygdala .h 214 to 778 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB164722 thymus .h 308 to 878 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BG284674 adenocarcinoma, cell line, Prostate .h 350 to 1193 1 to 839       839/893
(93 %)
33 diff
(96.4 %id)
DA383182 thalamus .h 415 to 975 2 to 562   tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DA591380 lung .h 417 to 975 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA159976 amygdala .h 529 to 1058 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
AA333565.
matches multiple genes
Embryo, 8 weeks .h 665 to 970 1 to 309   tiling clone, also hits gene FAM21A, FAM21B 309/313
(98 %)
4 diff
(98.8 %id)
DA373340 thalamus .h 858 to 1411 2 to 556   tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
AL050279 Kidney .h 937 to 2954 1 to 2017 K4S R5V R6D P7R Q8R ... tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 2017/2017
(100 %)
3 diff
(99.9 %id)
DA371094 thalamus .h 1198 to 1777 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
CF144369.
matches multiple genes
CNCAP(3)T-225 cell line, Prostate .h 1541 to 1968 8 to 435     also hits gene FAM21A, FAM21B 428/435
(98 %)
6 diff
(98.7 %id)
CF144448.
matches multiple genes
CNCAP(3)T-225 cell line, Prostate .h 1541 to 2035 8 to 502     also hits gene FAM21A, FAM21B 495/502
(98 %)
7 diff
(98.7 %id)
CF144373.
matches multiple genes
CNCAP(3)T-225 cell line, Prostate .h 1541 to 1999 8 to 466     also hits gene FAM21A, FAM21B 459/466
(98 %)
9 diff
(98.1 %id)
CF144452.
matches multiple genes
CNCAP(3)T-225 cell line, Prostate .h 1541 to 1959 8 to 426     also hits gene FAM21A, FAM21B 419/426
(98 %)
7 diff
(98.4 %id)
TI_154176403   .h 1541 to 2181 94 to 741       648/1151
(56 %)
37 diff
(96.8 %id)
TI_154176406.
matches multiple genes
  .h 1541 to 2143 94 to 706   tiling clone, also hits gene FAM21B 613/1322
(46 %)
21 diff
(98.5 %id)
TI_154176499.
matches multiple genes
  .h 1541 to 2209 82 to 757     also hits gene FAM21B 676/1343
(50 %)
19 diff
(98.6 %id)
TI_154176502   .h 1541 to 2136 95 to 698       604/1164
(51 %)
14 diff
(98.8 %id)
BI000589 head_normal .i 1 to 612 26 to 637 S2V R59* tiling clone,   614/639
(96 %)
26 diff
(96.0 %id)
CR994424 T-Lymphocytes .j 1 to 667 1 to 667 Q182P Q189X G193X tiling clone,   667/667
(100 %)
1 diff
(99.9 %id)
DA450571.
matches multiple genes
tongue, tumor tissue .k 1 to 585 2 to 588 E36R D38Q E39M D40K F41I ... tiling clone, capped also hits gene FAM21A, FAM21B 585/587
(99 %)
5 diff
(99.2 %id)
CN483274 eye .l 1 to 631 1 to 631 exact tiling clone,   631/631
(100 %)
0 diff
(100 %id)
DA237633 brain .m-u 1 to 528 2 to 529   tiling clone, capped   528/528
(100 %)
0 diff
(100 %id)
AW361895 colon .m-u 137 to 684 544 to 1 K112N C115Q N116S R117V C118Q ... tiling clone,   544/552
(98 %)
4 diff
(99.3 %id)
BX419069.
matches multiple genes
brain, fetal brain .n-u 1 to 982 1 to 970 C103V L104S Y105T tiling clone, also hits gene FAM21B 970/990
(97 %)
28 diff
(97.2 %id)
C17129.
matches multiple genes
  .n-u 778 to 1140 1 to 364   tiling clone, also hits gene FAM21B, styrerby 364/364
(100 %)
2 diff
(99.5 %id)
BE165026.
matches multiple genes
head_neck .n-u 847 to 1027 183 to 5   tiling clone, Submitted on the opposite strand, also hits gene FAM21B, styrerby 179/183
(97 %)
0 diff
(100 %id)
BE003802 breast_normal .n-u 912 to 1286 1 to 396   tiling clone,   396/396
(100 %)
65 diff
(83.6 %id)
BF960318.
matches multiple genes
nervous_normal .o 1 to 273 1 to 273 exact tiling clone, also hits gene FAM21A, FAM21B 273/274
(99 %)
1 diff
(99.7 %id)
DB126416 thymus .p 1 to 569 2 to 571 R29P R30Q S31E S32Q Q33P ... tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
AK126291 trachea .q-u 1 to 2804 2 to 2800 exact tiling clone, available from FLJ,   2800/2800
(100 %)
24 diff
(99.2 %id)
DB212124.
matches multiple genes
trachea .q-u 1 to 328 2 to 330   capped This clone was ignored, also hits gene FAM21A 329/329
(100 %)
1 diff
(99.7 %id)
DB348806.
matches multiple genes
trachea .q-u 2266 to 2804 539 to 1     This clone was ignored, also hits gene FAM21A 539/539
(100 %)
0 diff
(100 %id)
AA584512.
matches multiple genes
pheochromocytoma .r-u 1 to 429 428 to 1 exact tiling clone, also hits gene FAM21A, FAM21B 428/428
(100 %)
1 diff
(99.8 %id)
BF741606.
matches multiple genes
bocio_tumor .s-u 1 to 384 8 to 392 R24W R38E V39G S40* tiling clone, also hits gene FAM21A 385/392
(98 %)
6 diff
(98.5 %id)
TI_2194694833   Gene FAM21C, variant not shown         Suspected internal deletion, this clone was ignored    
CU448532 epidermis Gene FAM21C, variant not shown         Suspected internal deletion, this clone was ignored    
AL134795 brain Gene FAM21C, variant not shown         Suspected internal deletion, this clone was ignored    
DA593849.
matches multiple genes
lung Gene FAM21B, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
DA593849.
matches multiple genes
lung Gene FAM21C, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
DA593849.
matches multiple genes
lung Gene FAM21A, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
T87939.
matches multiple genes
lung Gene FAM21B, variant not shown         This clone was ignored, also hits gene FAM21A, FAM21B    
T87939.
matches multiple genes
lung Gene FAM21C, variant not shown         This clone was ignored, also hits gene FAM21A, FAM21B    
T87939.
matches multiple genes
lung Gene FAM21A, variant not shown         This clone was ignored, also hits gene FAM21A, FAM21B    
BM922415.
matches multiple genes
leukocyte Gene FAM21B, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
BM922415.
matches multiple genes
leukocyte Gene FAM21C, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
BM922415.
matches multiple genes
leukocyte Gene FAM21A, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene FAM21A, FAM21B    
BM681994.
matches multiple genes
eye, fetal eye Gene FAM21C, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored, also hits gene hakimi    
BM681994.
matches multiple genes
eye, fetal eye Gene hakimi, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored, also hits gene hakimi    
BM729059.
matches multiple genes
eye, fetal eye Gene FAM21C, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored, also hits gene hakimi    
BM729059.
matches multiple genes
eye, fetal eye Gene hakimi, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored, also hits gene hakimi    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o, .p, .q-u, .r-u, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI