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Gene KHDRBS3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
240 supporting clones for gene KHDRBS3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI550530 brain, hippocampus .a 1 to 359 1 to 359   tiling clone,   359/359
(100 %)
5 diff
(98.7 %id)
TI_44172099   .a 2 to 359 85 to 442       358/442
(80 %)
6 diff
(98.7 %id)
BI552119 brain, hippocampus .a 4 to 680 1 to 684       682/692
(98 %)
11 diff
(98.5 %id)
DB454918 testis .a 6 to 504 1 to 498       498/498
(100 %)
2 diff
(99.6 %id)
DB496468 hypothalamus .a 6 to 504 1 to 499       499/502
(99 %)
2 diff
(99.7 %id)
DB501294 hypothalamus .a 6 to 525 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
CR591014 fetal brain .a 7 to 1968 1 to 1962   tiling clone,   1962/1962
(100 %)
0 diff
(100 %id)
AL539785 brain, fetal brain .a 7 to 985 1 to 973   fully sequenced,   971/971
(100 %)
18 diff
(98.2 %id)
CB994507 placenta, pre-eclamptic placenta .a 7 to 348 28 to 369       342/1022
(33 %)
6 diff
(99.5 %id)
CB995283 placenta, pre-eclamptic placenta .a 7 to 504 28 to 524       497/941
(52 %)
10 diff
(99.0 %id)
TI_44171745   .a 9 to 630 85 to 710       626/771
(81 %)
15 diff
(98.1 %id)
BQ684684 melanotic melanoma, cell line, skin .a 10 to 503 63 to 555       493/1338
(36 %)
5 diff
(99.7 %id)
BC032606 Skin, melanotic melanoma. .a 15 to 1618 10 to 1613   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 1604/1604
(100 %)
1 diff
(100.0 %id)
BX341238   .a 15 to 869 1 to 848       459/848
(54 %)
13 diff
(98.5 %id)
BU845267 ovary, teratocarcinoma, cell line .a 16 to 504 35 to 523       489/1092
(44 %)
9 diff
(99.2 %id)
CD557594 testis .a 17 to 630 1 to 616       616/1057
(58 %)
20 diff
(98.2 %id)
BQ071836 brain, neuroblastoma, cell line .a 19 to 504 1 to 486       486/1147
(42 %)
3 diff
(99.8 %id)
BQ676180 melanotic melanoma, cell line, skin .a 19 to 744 1 to 727       727/941
(77 %)
12 diff
(98.8 %id)
BQ709583 Spleen .a 21 to 623 1 to 604       604/1026
(58 %)
10 diff
(99.1 %id)
AL537385 brain, fetal brain .a 22 to 783 1 to 763       763/763
(100 %)
3 diff
(99.7 %id)
AF051321 retina .a 23 to 1983 1 to 1961       1961/1963
(99 %)
4 diff
(99.8 %id)
NM_006558.1   .a 23 to 1985 1 to 1963   RefSeq,   1963/1963
(100 %)
5 diff
(99.8 %id)
BQ677208 melanotic melanoma, cell line, skin .a 33 to 625 1 to 594       594/906
(65 %)
8 diff
(99.2 %id)
DB458248 testis .a 34 to 504 1 to 471       471/482
(97 %)
1 diff
(99.8 %id)
CN273695 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 35 to 285 1 to 251       251/251
(100 %)
3 diff
(98.9 %id)
BX440541 brain, fetal brain .a 37 to 853 1 to 817       817/817
(100 %)
0 diff
(100 %id)
AL537290 brain, fetal brain .a 37 to 888 1 to 849       849/853
(99 %)
4 diff
(99.6 %id)
AL539772 brain, fetal brain .a 39 to 920 1 to 881       881/881
(100 %)
1 diff
(99.9 %id)
CD244637 testis .a 42 to 785 27 to 772       746/893
(83 %)
15 diff
(98.4 %id)
CD300007 testis .a 42 to 504 72 to 534       463/1023
(45 %)
6 diff
(99.5 %id)
BM925803 brain .a 46 to 470 1 to 424       424/1212
(34 %)
16 diff
(98.7 %id)
DR000209 fetal brain .a 51 to 717 9 to 675       667/675
(98 %)
6 diff
(99.2 %id)
AF069681 testes .a 67 to 1623 1 to 1557       1557/1557
(100 %)
2 diff
(99.9 %id)
DR000426 fetal brain .a 194 to 857 1 to 664       664/664
(100 %)
4 diff
(99.4 %id)
DB477835 hippocampus .a 284 to 763 1 to 480       480/480
(100 %)
0 diff
(100 %id)
BQ878314 dorsal root ganglia .a 284 to 1198 1 to 925       925/927
(99 %)
21 diff
(97.8 %id)
BX405784 fetal liver, Liver .a 410 to 1254 1 to 845   fully sequenced,   845/845
(100 %)
0 diff
(100 %id)
CV030830 mixed .a 417 to 932 1 to 516       516/516
(100 %)
8 diff
(98.5 %id)
T18913   .a 422 to 572 1 to 151       151/151
(100 %)
0 diff
(100 %id)
BG334025 melanotic melanoma, skin .a 457 to 1221 1 to 765       765/938
(81 %)
25 diff
(97.4 %id)
BE274173 melanotic melanoma, skin .a 477 to 953 1 to 478       478/478
(100 %)
2 diff
(99.6 %id)
BE275166 melanotic melanoma, skin .a 477 to 1306 1 to 835       835/1008
(82 %)
13 diff
(98.8 %id)
BE727675 melanotic melanoma, skin .a 478 to 1285 1 to 802       802/814
(98 %)
18 diff
(97.8 %id)
BQ213303 melanotic melanoma, skin .a 492 to 1219 1 to 736       736/883
(83 %)
15 diff
(98.4 %id)
CN346796 embryonic stem cells, DMSO-treated H9 cellline .a 502 to 1052 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
BE819376 breast_normal .a 503 to 977 480 to 5       476/603
(78 %)
1 diff
(99.9 %id)
BP277416 Kidney .a 506 to 1027 1 to 522       522/562
(92 %)
3 diff
(99.5 %id)
AA249003   .a 529 to 741 1 to 209       209/256
(81 %)
8 diff
(96.9 %id)
DB499349 hypothalamus .a 556 to 1042 1 to 486       486/486
(100 %)
3 diff
(99.4 %id)
CB145233 Liver .a 560 to 859 1 to 300       300/300
(100 %)
5 diff
(98.4 %id)
AA121680 lung, lung carcinoma .a 620 to 1068 1 to 462       407/462
(88 %)
17 diff
(96.4 %id)
BG181314   .a 624 to 1380 1 to 757       757/758
(99 %)
8 diff
(99.0 %id)
BG215534   .a 624 to 1378 1 to 755       755/755
(100 %)
0 diff
(100 %id)
AW295087   .a 647 to 1108 18 to 479     Submitted on the opposite strand 462/462
(100 %)
2 diff
(99.6 %id)
AA083787   .a 658 to 1092 1 to 436       436/436
(100 %)
1 diff
(99.8 %id)
BP247255 Kidney .a 673 to 1233 1 to 560       560/593
(94 %)
5 diff
(99.2 %id)
BF983316 duodenal adenocarcinoma, cell line, small intestine .a 679 to 1366 1 to 684       684/859
(79 %)
19 diff
(97.8 %id)
W22876 eye, retina .a 685 to 1199 22 to 536       515/756
(68 %)
18 diff
(97.7 %id)
BY994471   .a 694 to 1387 10 to 703       694/703
(98 %)
6 diff
(99.2 %id)
AW364588 denis_drash .a 736 to 1201 1 to 466       466/481
(96 %)
6 diff
(98.8 %id)
BG204953   .a 738 to 1454 1 to 718       718/788
(91 %)
22 diff
(97.3 %id)
BE622947 melanotic melanoma, skin .a 801 to 1566 767 to 1       767/914
(83 %)
10 diff
(99.0 %id)
AA249795   .a 817 to 1003 1 to 186       186/186
(100 %)
7 diff
(96.3 %id)
BG180542 adenocarcinoma, cell line, Prostate .a 888 to 1535 1 to 651       651/651
(100 %)
5 diff
(99.3 %id)
CA431343 cell lines, Enchondroma .a 896 to 1616 738 to 19   AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 720/720
(100 %)
2 diff
(99.8 %id)
BM793101 Ascites, stomach .a 926 to 1385 1 to 460       460/460
(100 %)
1 diff
(99.8 %id)
CB156961 Liver .a 945 to 1481 1 to 537       537/537
(100 %)
2 diff
(99.7 %id)
AL539784 brain, fetal brain .a 955 to 1968 1007 to 1   fully sequenced,   1007/1007
(100 %)
24 diff
(97.7 %id)
AI625683 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1025 to 1618 586 to 1       586/597
(98 %)
16 diff
(97.4 %id)
CD678633 eye, Trabecular meshwork .a 1081 to 1702 1 to 625       625/625
(100 %)
3 diff
(99.6 %id)
AA524615   .a 1095 to 1628 534 to 1       534/539
(99 %)
5 diff
(99.1 %id)
DB546441 hippocampus .a 1120 to 1571 1 to 452     Submitted on the opposite strand 452/452
(100 %)
1 diff
(99.8 %id)
DB517984 testis .a 1142 to 1571 1 to 430     Submitted on the opposite strand 430/430
(100 %)
1 diff
(99.8 %id)
AI309941 2 pooled tumors (clear cell type), Kidney .a 1146 to 1623 478 to 1       478/478
(100 %)
3 diff
(99.4 %id)
AL537384 brain, fetal brain .a 1147 to 1968 824 to 1       824/824
(100 %)
9 diff
(99.0 %id)
DB567490 hypothalamus .a 1147 to 1618 1 to 472     Submitted on the opposite strand 472/472
(100 %)
1 diff
(99.8 %id)
DB572489 hypothalamus .a 1148 to 1618 1 to 472     Submitted on the opposite strand 472/472
(100 %)
5 diff
(99.0 %id)
AL566747 brain, fetal brain .a 1149 to 1943 738 to 1       498/760
(65 %)
23 diff
(97.0 %id)
DB533839 hippocampus .a 1158 to 1571 1 to 413     Submitted on the opposite strand 413/413
(100 %)
19 diff
(95.4 %id)
BQ319902 colon .a 1176 to 1706 1 to 527       527/535
(98 %)
18 diff
(96.7 %id)
DB517737 testis .a 1176 to 1614 1 to 439     Submitted on the opposite strand 439/441
(99 %)
2 diff
(99.6 %id)
DB507495 testis .a 1179 to 1571 1 to 393     Submitted on the opposite strand 393/393
(100 %)
1 diff
(99.8 %id)
AA112001   .a 1184 to 1611 429 to 1       429/430
(99 %)
2 diff
(99.6 %id)
BG182806   .a 1216 to 1618 1 to 404   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 404/404
(100 %)
11 diff
(97.3 %id)
BG212952   .a 1218 to 1618 1 to 401   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 401/401
(100 %)
6 diff
(98.6 %id)
BG186512   .a 1219 to 1618 1 to 400   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 400/400
(100 %)
7 diff
(98.3 %id)
BG197828   .a 1220 to 1563 364 to 20   AAA Submitted on the opposite strand 345/347
(99 %)
6 diff
(98.3 %id)
BX405783 fetal liver, Liver .a 1220 to 1969 768 to 1   fully sequenced,   768/768
(100 %)
37 diff
(95.2 %id)
BG186511   .a 1222 to 1616 41 to 435   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 395/437
(90 %)
15 diff
(96.6 %id)
BG197323   .a 1222 to 1618 20 to 416   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 397/416
(95 %)
7 diff
(98.4 %id)
BG198884   .a 1222 to 1555 20 to 353       334/356
(93 %)
10 diff
(97.2 %id)
BG203028   .a 1222 to 1457 21 to 256       236/256
(92 %)
8 diff
(96.9 %id)
BG205593   .a 1222 to 1618 50 to 445   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 396/445
(88 %)
10 diff
(97.8 %id)
BG206174   .a 1222 to 1555 68 to 401       334/405
(82 %)
20 diff
(95.1 %id)
BG204047   .a 1223 to 1616 1 to 394   AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 394/394
(100 %)
5 diff
(98.8 %id)
BG183860   .a 1225 to 1555 345 to 16     Submitted on the opposite strand 330/345
(95 %)
2 diff
(99.5 %id)
BG187643   .a 1225 to 1561 343 to 6     Submitted on the opposite strand 338/343
(98 %)
0 diff
(100 %id)
BG193304   .a 1225 to 1563 1 to 339   AAA   339/339
(100 %)
2 diff
(99.5 %id)
BG195322   .a 1225 to 1553 351 to 22     Submitted on the opposite strand 330/351
(94 %)
1 diff
(99.8 %id)
BG199933   .a 1225 to 1556 344 to 13     Submitted on the opposite strand 332/344
(96 %)
1 diff
(99.8 %id)
BG200439   .a 1225 to 1561 347 to 7     Submitted on the opposite strand 341/347
(98 %)
0 diff
(100 %id)
BG200955   .a 1225 to 1633 409 to 1     Submitted on the opposite strand 409/409
(100 %)
1 diff
(99.8 %id)
BG203029   .a 1225 to 1568 1 to 345       345/345
(100 %)
4 diff
(98.9 %id)
BG206175   .a 1225 to 1561 347 to 8     Submitted on the opposite strand 340/347
(97 %)
1 diff
(99.8 %id)
BG208887   .a 1225 to 1555 346 to 17     Submitted on the opposite strand 330/346
(95 %)
1 diff
(99.8 %id)
BG209326   .a 1225 to 1557 387 to 54     Submitted on the opposite strand 334/387
(86 %)
0 diff
(100 %id)
BG214037   .a 1225 to 1620 1 to 395   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 395/396
(99 %)
7 diff
(98.3 %id)
BG218799   .a 1225 to 1561 342 to 6     Submitted on the opposite strand 337/342
(98 %)
3 diff
(99.2 %id)
BG217769   .a 1228 to 1406 1 to 180       180/180
(100 %)
7 diff
(96.2 %id)
BG211896   .a 1231 to 1616 14 to 397   AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 384/397
(96 %)
7 diff
(98.3 %id)
BG218797   .a 1238 to 1618 31 to 411   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 381/411
(92 %)
7 diff
(98.3 %id)
BG201316   .a 1240 to 1618 66 to 441   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 376/441
(85 %)
7 diff
(98.5 %id)
AI651790 pooled germ cell tumors .a 1251 to 1684 435 to 1       435/435
(100 %)
5 diff
(98.9 %id)
BF526521 brain, glioblastoma with EGFR amplification .a 1262 to 1571 35 to 344   AAA   310/344
(90 %)
7 diff
(98.0 %id)
BE466895 pooled germ cell tumors .a 1268 to 1684 419 to 1       419/419
(100 %)
2 diff
(99.6 %id)
AI656961 pooled germ cell tumors .a 1269 to 1686 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
BX103812 ovarian tumor, ovary .a 1273 to 1959 1 to 687       687/688
(99 %)
1 diff
(99.9 %id)
AA481913 ovarian tumor, ovary .a 1273 to 1646 1 to 374   fully sequenced,   374/374
(100 %)
1 diff
(99.8 %id)
BU589181 mixed (pool of 40 RNAs) .a 1296 to 1580 3 to 287   AAA   285/287
(99 %)
5 diff
(98.3 %id)
AA416675 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1301 to 1558 1 to 258   fully sequenced,   258/258
(100 %)
1 diff
(99.7 %id)
BG183861   .a 1305 to 1965 664 to 1     Submitted on the opposite strand 664/744
(89 %)
11 diff
(98.6 %id)
BG201317   .a 1305 to 1618 68 to 381   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 314/381
(82 %)
1 diff
(99.8 %id)
AA417299 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1335 to 1573 241 to 3   fully sequenced,   239/241
(99 %)
0 diff
(100 %id)
BE222669 brain, oligodendroglioma .a 1365 to 1621 257 to 1       257/290
(88 %)
8 diff
(97.3 %id)
BG181783   .a 1366 to 1562 201 to 6     Submitted on the opposite strand 196/201
(97 %)
0 diff
(100 %id)
BG182304   .a 1366 to 1555 1 to 189       189/192
(98 %)
2 diff
(99.0 %id)
BG184902   .a 1366 to 1562 200 to 6     Submitted on the opposite strand 195/200
(97 %)
0 diff
(100 %id)
BG184904   .a 1366 to 1618 1 to 252   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 252/252
(100 %)
2 diff
(99.3 %id)
BG187017   .a 1366 to 1540 174 to 1     Submitted on the opposite strand 174/174
(100 %)
1 diff
(99.5 %id)
BG188051   .a 1366 to 1555 201 to 13     Submitted on the opposite strand 189/201
(94 %)
0 diff
(100 %id)
BG188606   .a 1366 to 1566 202 to 3     Submitted on the opposite strand 200/202
(99 %)
0 diff
(100 %id)
BG194910   .a 1366 to 1504 150 to 12     Submitted on the opposite strand 139/150
(92 %)
4 diff
(97.4 %id)
BG195321   .a 1366 to 1562 204 to 9     Submitted on the opposite strand 196/204
(96 %)
0 diff
(100 %id)
BG196346   .a 1366 to 1560 244 to 52     Submitted on the opposite strand 193/219
(88 %)
0 diff
(100 %id)
BG198340   .a 1366 to 1560 206 to 12     Submitted on the opposite strand 195/206
(94 %)
0 diff
(100 %id)
BG203523   .a 1366 to 1561 218 to 24     Submitted on the opposite strand 195/218
(89 %)
0 diff
(100 %id)
BG203524   .a 1366 to 1561 202 to 7     Submitted on the opposite strand 196/202
(97 %)
0 diff
(100 %id)
BG205072   .a 1366 to 1562 201 to 6     Submitted on the opposite strand 196/201
(97 %)
0 diff
(100 %id)
BG205594   .a 1366 to 1562 201 to 6     Submitted on the opposite strand 196/201
(97 %)
0 diff
(100 %id)
BG206689   .a 1366 to 1563 1 to 197       197/197
(100 %)
3 diff
(98.5 %id)
BG209327   .a 1366 to 1554 202 to 15     Submitted on the opposite strand 188/202
(93 %)
0 diff
(100 %id)
BG209818   .a 1366 to 1559 202 to 10     Submitted on the opposite strand 193/202
(95 %)
0 diff
(100 %id)
BG212231   .a 1366 to 1553 1 to 187       187/192
(97 %)
0 diff
(100 %id)
BG212953   .a 1366 to 1554 1 to 188       188/192
(97 %)
0 diff
(100 %id)
BG213476   .a 1366 to 1507 142 to 2     Submitted on the opposite strand 141/142
(99 %)
0 diff
(100 %id)
BG214553   .a 1366 to 1552 193 to 5     Submitted on the opposite strand 189/193
(97 %)
0 diff
(100 %id)
BG218798   .a 1366 to 1527 169 to 10     Submitted on the opposite strand 160/169
(94 %)
0 diff
(100 %id)
BG219783   .a 1366 to 1564 203 to 4     Submitted on the opposite strand 200/203
(98 %)
11 diff
(94.6 %id)
BG219784   .a 1366 to 1554 1 to 188       188/192
(97 %)
0 diff
(100 %id)
AW971340   .a 1380 to 1618 343 to 105   AAA Submitted on the opposite strand 239/239
(100 %)
5 diff
(98.0 %id)
CF128938 Chondrosarcoma Lung Metastasis cell lines, lung .a 1397 to 1781 1 to 387       387/387
(100 %)
3 diff
(99.3 %id)
TI_154190442   .a 1397 to 1983 50 to 641       592/1000
(59 %)
19 diff
(98.1 %id)
AI250970 borderline ovarian carcinoma, ovary .a 1406 to 1644 1 to 240     Submitted on the opposite strand 240/254
(94 %)
13 diff
(94.9 %id)
AI340568 brain, oligodendroglioma .a 1406 to 1570 1 to 165   AAA Submitted on the opposite strand 165/165
(100 %)
8 diff
(95.2 %id)
AI376500 brain, oligodendroglioma .a 1409 to 1650 26 to 267     Submitted on the opposite strand 242/272
(88 %)
6 diff
(97.8 %id)
AI613405 brain, oligodendroglioma .a 1409 to 1616 26 to 234   AAA Submitted on the opposite strand 209/234
(89 %)
6 diff
(97.5 %id)
BF054759 brain, oligodendroglioma .a 1409 to 1616 31 to 239   AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 209/239
(87 %)
6 diff
(97.5 %id)
BU618865 Cell Line, Chondrosarcoma .a 1412 to 1980 584 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 570/570
(100 %)
2 diff
(99.7 %id)
T82299   .a 1418 to 1675 259 to 1       259/259
(100 %)
3 diff
(98.9 %id)
BX434658 brain, fetal brain .a 1420 to 1979 567 to 5       563/626
(89 %)
0 diff
(100 %id)
BF054867 brain, oligodendroglioma .a 1423 to 1630 1 to 207       207/207
(100 %)
2 diff
(99.1 %id)
DB572518 hypothalamus .a 1499 to 1980 1 to 484     Submitted on the opposite strand 484/485
(99 %)
7 diff
(98.6 %id)
DB524371 testis .a 1503 to 1980 1 to 479     Submitted on the opposite strand 479/479
(100 %)
2 diff
(99.6 %id)
DB526952 testis .a 1529 to 1980 1 to 453     Submitted on the opposite strand 453/453
(100 %)
3 diff
(99.4 %id)
DB523742 testis .a 1530 to 1980 1 to 453     Submitted on the opposite strand 453/453
(100 %)
5 diff
(98.9 %id)
DB570476 hypothalamus .a 1535 to 1980 1 to 447   AAA Submitted on the opposite strand 447/447
(100 %)
2 diff
(99.6 %id)
AI291507 placenta .a 1538 to 1983 450 to 2   tiling clone,   449/450
(99 %)
0 diff
(100 %id)
AI016470   .a 1549 to 1983 441 to 5       437/441
(99 %)
0 diff
(100 %id)
DB536261 hippocampus .a 1551 to 1980 23 to 449     Submitted on the opposite strand 427/449
(95 %)
6 diff
(98.7 %id)
DB574197 hypothalamus .a 1552 to 1980 1 to 430   AAA Submitted on the opposite strand 430/430
(100 %)
2 diff
(99.6 %id)
CN346798 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1559 to 1777 1 to 221       221/221
(100 %)
2 diff
(99.1 %id)
FN075348 breast carcinoma .a 1562 to 1616 1 to 55       55/55
(100 %)
0 diff
(100 %id)
DB555682 hypothalamus .a 1565 to 1980 1 to 417   AAA Submitted on the opposite strand 417/417
(100 %)
23 diff
(94.5 %id)
AA480105 ovarian tumor, ovary .a 1616 to 1985 370 to 1   fully sequenced,   370/370
(100 %)
2 diff
(99.5 %id)
AI266504 placenta .a 1619 to 1983 366 to 2       365/369
(98 %)
0 diff
(100 %id)
CB155439 brain .a 1628 to 1983 1 to 356       356/358
(99 %)
1 diff
(99.8 %id)
BX352356   .a 1644 to 1954 368 to 55       314/382
(82 %)
0 diff
(100 %id)
H23714 brain .a 1744 to 1965 227 to 1       227/227
(100 %)
5 diff
(97.8 %id)
CD247615 embryonic stem cells, WA01, passage 38 .a 1749 to 1980 23 to 254   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 232/254
(91 %)
6 diff
(97.7 %id)
AL527075 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 1 to 468 1 to 470   tiling clone,   470/470
(100 %)
2 diff
(99.6 %id)
AF051322 retina .b 415 to 1512 1 to 1098   tiling clone, AAA   1098/1098
(100 %)
1 diff
(100.0 %id)
AL562804 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 477 to 1438 962 to 1       962/962
(100 %)
8 diff
(99.2 %id)
BQ670932 epidermoid carcinoma, cell line, salivary gland .b 621 to 1359 1 to 741       741/999
(74 %)
10 diff
(99.0 %id)
BQ672815 epidermoid carcinoma, cell line, salivary gland .b 621 to 1452 1 to 840       840/886
(94 %)
24 diff
(97.3 %id)
BQ673257 epidermoid carcinoma, cell line, salivary gland .b 621 to 1512 1 to 891   tiling clone, AAA   891/891
(100 %)
5 diff
(99.5 %id)
BI770745 pooled lung and spleen .b 879 to 1527 1 to 648   tiling clone,   648/825
(78 %)
11 diff
(98.7 %id)
TI_57184109   .b 879 to 1686 39 to 859   tiling clone,   749/863
(86 %)
29 diff
(96.7 %id)
AA670123 lung, lung carcinoma .b 979 to 1511 533 to 1       533/533
(100 %)
4 diff
(99.3 %id)
CF552122 Pooled muscle (cardiac and skeletal) .b 1458 to 2333 1 to 886   tiling clone,   886/892
(99 %)
20 diff
(97.8 %id)
AA081857   .b 1564 to 1916 1 to 350       350/360
(97 %)
3 diff
(99.2 %id)
N59849 multiple sclerosis lesions .b 1925 to 2360 1 to 442   tiling clone, Submitted on the opposite strand 442/456
(96 %)
11 diff
(97.6 %id)
AA456696 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2030 to 2406 1 to 376   tiling clone, fully sequenced,   376/376
(100 %)
2 diff
(99.5 %id)
AA456299 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2358 to 2735 378 to 1   tiling clone, fully sequenced,   378/378
(100 %)
0 diff
(100 %id)
AA112249   .b 2508 to 2906 405 to 1   tiling clone,   405/406
(99 %)
12 diff
(97.1 %id)
DT217710 brain .c 1 to 679 1 to 679   tiling clone,   679/679
(100 %)
0 diff
(100 %id)
AI373731 Kidney .c 483 to 1131 651 to 3   tiling clone,   649/651
(99 %)
23 diff
(96.5 %id)
BI832362 brain, medulla .d 1 to 759 31 to 794   tiling clone,   764/795
(96 %)
14 diff
(98.3 %id)
TI_57170947   .d 1 to 759 31 to 794       764/795
(96 %)
14 diff
(98.3 %id)
DB442625 testis .d 11 to 469 1 to 459       459/459
(100 %)
0 diff
(100 %id)
DB458882 testis .d 23 to 473 1 to 451       451/451
(100 %)
0 diff
(100 %id)
BG722044 testis .d 23 to 697 1 to 675   tiling clone,   675/685
(98 %)
6 diff
(99.2 %id)
BG722001 testis .d 27 to 697 1 to 673       673/787
(85 %)
9 diff
(98.9 %id)
DB459482 testis .d 34 to 511 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
DB452188 testis .d 59 to 550 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
TI_44001110   .d 66 to 900 79 to 918       840/1051
(79 %)
32 diff
(97.0 %id)
BI544701 brain, hippocampus .d 72 to 929 1 to 864       864/967
(89 %)
27 diff
(97.3 %id)
DB468809 hippocampus .d 77 to 410 1 to 333       333/376
(88 %)
6 diff
(98.5 %id)
CN346797 embryonic stem cells, cell lines H1, H7, andH9 .d 138 to 798 1 to 661   tiling clone,   661/664
(99 %)
1 diff
(99.9 %id)
AW088680 ovary, tumor, 5 pooled (see description) .d 522 to 1229 702 to 1   tiling clone,   702/702
(100 %)
31 diff
(95.6 %id)
AW020416 cochlea, ear .d 795 to 1228 8 to 441   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 434/441
(98 %)
1 diff
(99.8 %id)
BQ008222 Chondrosarcoma, Left Pubic Bone .d 853 to 1228 392 to 17   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 376/376
(100 %)
1 diff
(99.8 %id)
BG205071   .d 885 to 1181 1 to 296   AAA   296/296
(100 %)
11 diff
(96.3 %id)
BG198339   .d 895 to 1228 14 to 348   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 335/348
(96 %)
12 diff
(96.6 %id)
BX537666 human retina .e 1 to 5456 1 to 5455 exact tiling clone, available from DKFZ, AAA   5455/5455
(100 %)
5 diff
(100.0 %id)
H86949 eye, retina .e 12 to 394 11 to 398   tiling clone,   388/401
(96 %)
9 diff
(97.8 %id)
BF330284 breast_normal .e 3499 to 3624 126 to 1       126/126
(100 %)
1 diff
(99.3 %id)
BG184903   .f 1 to 526 569 to 43 exact tiling clone, Submitted on the opposite strand 527/569
(92 %)
1 diff
(99.9 %id)
BI825425 brain, medulla .f 56 to 569 1 to 514       514/554
(92 %)
7 diff
(98.8 %id)
TI_57170482   .f 56 to 569 45 to 558       514/1103
(46 %)
16 diff
(98.6 %id)
BI753522 brain .f 97 to 758 1 to 662   tiling clone,   662/666
(99 %)
3 diff
(99.6 %id)
TI_57218294   .f 97 to 758 32 to 693       662/697
(94 %)
10 diff
(98.6 %id)
DB520327 testis .f 115 to 560 1 to 446   tiling clone, Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
AI650382 pooled germ cell tumors .f 122 to 536 429 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 415/415
(100 %)
0 diff
(100 %id)
AA948596 pooled .f 142 to 555 414 to 1       414/414
(100 %)
0 diff
(100 %id)
AA907358 pooled .f 171 to 552 382 to 1       382/382
(100 %)
0 diff
(100 %id)
AW082384 pooled .f 186 to 559 375 to 2       374/375
(99 %)
0 diff
(100 %id)
AI638608 pooled germ cell tumors .f 199 to 552 354 to 1       354/354
(100 %)
0 diff
(100 %id)
AW590233 pooled germ cell tumors .f 199 to 552 354 to 1       354/354
(100 %)
1 diff
(99.8 %id)
AI239592 pooled .f 203 to 555 353 to 1       353/353
(100 %)
0 diff
(100 %id)
BG207718   .f 257 to 551 1 to 297   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 297/298
(99 %)
7 diff
(97.7 %id)
BG189110   .f 269 to 560 9 to 299   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 291/299
(97 %)
2 diff
(99.4 %id)
BG194909   .f 285 to 560 37 to 312   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 276/312
(88 %)
6 diff
(98.1 %id)
AA954323 pooled .f 309 to 560 252 to 1       252/252
(100 %)
0 diff
(100 %id)
AI219761   .f 321 to 727 405 to 1   tiling clone,   405/405
(100 %)
1 diff
(99.8 %id)
BG194306   .g 1 to 197 1 to 197 exact tiling clone,   197/197
(100 %)
1 diff
(99.5 %id)
DB317747 brain Gene KHDRBS3, variant not shown              
DA532489 brain Gene KHDRBS3, variant not shown       capped      
BC068536 Brain, hypothalamus Gene KHDRBS3, variant not shown       available from MGC, AAA This clone was ignored    
DA291658 hippocampus Gene KHDRBS3, variant not shown       capped      
BG191144   Gene KHDRBS3, variant not shown         Suspected internal deletion, this clone was ignored    
BG218800   Gene KHDRBS3, variant not shown         Submitted on the opposite strand    
CN281005 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene KHDRBS3, variant not shown              
DB303571 amygdala Gene KHDRBS3, variant not shown              
DA195838 amygdala Gene KHDRBS3, variant not shown       capped      
DB299058 cerebellum Gene KHDRBS3, variant not shown         This clone was ignored    
DA100180 cerebellum Gene KHDRBS3, variant not shown       capped This clone was ignored    
DA387849 thalamus Gene KHDRBS3, variant not shown       capped      
AA007579 liver and spleen Gene KHDRBS3, variant not shown         This clone was ignored    
AA007604 liver and spleen Gene KHDRBS3, variant not shown         This clone was ignored    
BE302546 melanotic melanoma, skin Gene KHDRBS3, variant not shown         This clone was ignored    
BG709192 brain, hypothalamus Gene KHDRBS3, variant not shown         This clone was ignored    
BI600686 brain, hypothalamus Gene KHDRBS3, variant not shown         This clone was ignored    
BI667674 brain, hypothalamus Gene KHDRBS3, variant not shown         Suspected internal deletion, this clone was ignored    
TI_45212861   Gene KHDRBS3, variant not shown         This clone was ignored    
TI_44344043   Gene KHDRBS3, variant not shown         Suspected internal deletion, this clone was ignored    
DA808112 brain Gene KHDRBS3, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI