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Gene KCTD6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
99 supporting clones for gene KCTD6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR006791 Spleen .a 1 to 467 7 to 472   tiling clone,   466/473
(98 %)
9 diff
(98.1 %id)
NM_001128214.1   .a 84 to 1647 1 to 1564   RefSeq,   1564/1566
(99 %)
5 diff
(99.7 %id)
DA359951 subthalamic nucleus .a 85 to 651 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BG776810 lung, mucoepidermoid carcinoma .a 94 to 714 1 to 623       623/623
(100 %)
2 diff
(99.7 %id)
AK075297   .a 102 to 1634 1 to 1534   tiling clone, available from FLJ,   1534/1534
(100 %)
3 diff
(99.9 %id)
BG394828 eye, retinoblastoma .a 103 to 850 1 to 762       762/892
(85 %)
34 diff
(96.2 %id)
DB294275   .a 103 to 949 2 to 850   capped   849/853
(99 %)
10 diff
(98.9 %id)
DN994722 brain, whole brain .a 105 to 641 8 to 544       537/544
(98 %)
6 diff
(98.9 %id)
BG701201 brain, hippocampus .a 108 to 856 1 to 749       749/751
(99 %)
10 diff
(98.7 %id)
CV807794 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 113 to 877 1 to 768       768/768
(100 %)
15 diff
(98.1 %id)
BQ638023 eye, retina .a 115 to 769 1 to 655       655/655
(100 %)
0 diff
(100 %id)
BG032976 breast, mammary adenocarcinoma, cell line .a 117 to 870 1 to 755       755/1100
(68 %)
11 diff
(99.0 %id)
CN263175 embryonic stem cells, DMSO-treated H9 cellline .a 118 to 554 1 to 437       437/437
(100 %)
4 diff
(99.1 %id)
DA356851 subthalamic nucleus .a 120 to 695 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
CN263174 embryonic stem cells, cell lines H1, H7, andH9 .a 120 to 770 1 to 652       652/652
(100 %)
6 diff
(99.1 %id)
BG113742 Bone, osteosarcoma, cell line .a 121 to 942 1 to 819       819/1140
(71 %)
36 diff
(96.9 %id)
BX374354 Neuroblastoma Cot 10-normalized .a 158 to 966 1 to 809       809/809
(100 %)
12 diff
(98.6 %id)
BX333888 Neuroblastoma Cot 50-normalized .a 158 to 1038 1 to 878       878/933
(94 %)
8 diff
(99.2 %id)
BF690848 melanotic melanoma, high MDR, skin .a 172 to 780 1 to 611       611/825
(74 %)
18 diff
(97.9 %id)
BF691629 melanotic melanoma, high MDR, skin .a 172 to 900 1 to 727       727/798
(91 %)
19 diff
(97.7 %id)
BG992471 head_neck .a 194 to 875 1 to 681       681/686
(99 %)
17 diff
(97.6 %id)
BE070081 breast .a 195 to 797 698 to 94     Submitted on the opposite strand 605/698
(86 %)
0 diff
(100 %id)
EL735703 mixed .a 201 to 799 1 to 597       597/629
(94 %)
3 diff
(99.6 %id)
TI_1948220871   .a 201 to 484 139 to 422       284/312
(91 %)
6 diff
(98.1 %id)
TI_1948221040   .a 201 to 462 135 to 396       262/290
(90 %)
6 diff
(98.0 %id)
TI_1948221214   .a 201 to 913 838 to 125       714/1319
(54 %)
0 diff
(100 %id)
TI_1948221377   .a 201 to 501 140 to 439       300/328
(91 %)
7 diff
(97.9 %id)
BG528086 lung, mucoepidermoid carcinoma .a 258 to 860 1 to 603       603/880
(68 %)
19 diff
(97.9 %id)
BF701092 brain, primitive neuroectoderm .a 290 to 976 1 to 680       680/863
(78 %)
17 diff
(98.1 %id)
BF816929 colon_ins .a 292 to 851 583 to 24     Submitted on the opposite strand 560/583
(96 %)
0 diff
(100 %id)
AA286692 germinal center B cell .a 312 to 797 1 to 485       485/485
(100 %)
3 diff
(99.4 %id)
BI064155 uterus_tumor .a 359 to 912 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
W78979 liver and spleen .a 381 to 664 1 to 285       285/288
(98 %)
3 diff
(99.0 %id)
BF701223 brain, primitive neuroectoderm .a 435 to 1046 1 to 616       616/814
(75 %)
14 diff
(98.3 %id)
CB157922 Liver .a 450 to 824 1 to 375       375/375
(100 %)
2 diff
(99.5 %id)
BE143008 head_neck .a 572 to 899 376 to 49     Submitted on the opposite strand 328/376
(87 %)
0 diff
(100 %id)
FN154648 breast carcinoma .a 610 to 713 104 to 1     Submitted on the opposite strand 104/104
(100 %)
1 diff
(99.1 %id)
TI_1948221378   .a 614 to 913 424 to 125       300/327
(91 %)
0 diff
(100 %id)
BQ338236 nervous_normal .a 618 to 906 295 to 11       285/295
(96 %)
0 diff
(100 %id)
W27344 eye, retina .a 636 to 1011 34 to 410       377/520
(72 %)
5 diff
(99.1 %id)
TI_1948221041   .a 659 to 913 382 to 128       255/282
(90 %)
0 diff
(100 %id)
TI_1948220872   .a 667 to 913 375 to 129       247/274
(90 %)
0 diff
(100 %id)
BF724718 eye, Iris .a 672 to 1226 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BX342039   .a 678 to 1607 917 to 1       917/969
(94 %)
17 diff
(98.3 %id)
FN117592 breast carcinoma .a 703 to 787 89 to 5     Submitted on the opposite strand 85/90
(94 %)
0 diff
(100 %id)
FN140757 breast carcinoma .a 712 to 830 119 to 1     Submitted on the opposite strand 119/119
(100 %)
0 diff
(100 %id)
BX095242 liver and spleen .a 788 to 1480 1 to 692       692/692
(100 %)
2 diff
(99.8 %id)
CR741330 liver and spleen .a 788 to 1480 1 to 692       692/692
(100 %)
2 diff
(99.8 %id)
BE065084 breast .a 815 to 993 15 to 194       180/203
(88 %)
7 diff
(96.6 %id)
T75514 liver and spleen .a 816 to 1281 1 to 464   fully sequenced,   464/464
(100 %)
20 diff
(95.7 %id)
T75544 liver and spleen .a 816 to 1037 1 to 221       221/225
(98 %)
4 diff
(98.3 %id)
BQ186231 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 849 to 1562 1 to 712       712/712
(100 %)
10 diff
(98.6 %id)
CK023911 brain/CNS, Human Brain - Cerebellar Cortex .a 949 to 1607 1 to 644   AAA   644/668
(96 %)
17 diff
(97.5 %id)
CN263176 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 953 to 1301 1 to 350       350/350
(100 %)
1 diff
(99.8 %id)
N98629 multiple sclerosis lesions .a 973 to 1207 8 to 244       237/244
(97 %)
5 diff
(98.0 %id)
BX383728   .a 1048 to 1638 1 to 593   fully sequenced,   593/593
(100 %)
4 diff
(99.4 %id)
TI_149293423   .a 1072 to 1640 655 to 86   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 570/968
(58 %)
5 diff
(99.5 %id)
BM975161 lung .a 1072 to 1640 588 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 570/572
(99 %)
5 diff
(99.2 %id)
DB384328   .a 1075 to 1634 560 to 1       560/561
(99 %)
10 diff
(98.3 %id)
FN092629 breast carcinoma .a 1083 to 1186 102 to 1     Submitted on the opposite strand 102/110
(92 %)
3 diff
(97.3 %id)
CA311239 Human Lung Epithelial cells, lung .a 1137 to 1642 12 to 517   tiling clone, AAA Submitted on the opposite strand 506/554
(91 %)
1 diff
(99.9 %id)
AA778205 liver and spleen .a 1165 to 1634 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AI192865 lung .a 1186 to 1637 452 to 1       452/452
(100 %)
0 diff
(100 %id)
W80381 liver and spleen .a 1195 to 1636 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AA682546 liver and spleen .a 1203 to 1599 398 to 1       398/398
(100 %)
1 diff
(99.8 %id)
AA721100 germinal center B cell .a 1219 to 1642 432 to 8       425/432
(98 %)
0 diff
(100 %id)
T75480 liver and spleen .a 1251 to 1644 408 to 1   fully sequenced,   408/408
(100 %)
18 diff
(95.6 %id)
DT220099 brain .a 1268 to 1638 1 to 371       371/374
(99 %)
2 diff
(99.5 %id)
FN062445 breast carcinoma .a 1269 to 1379 1 to 115       115/116
(99 %)
6 diff
(94.9 %id)
AA503048 Prostate .a 1279 to 1608 9 to 338       330/346
(95 %)
2 diff
(99.5 %id)
AA702885 liver and spleen .a 1285 to 1634 351 to 1       351/351
(100 %)
1 diff
(99.8 %id)
AA649271 Ewing's sarcoma .a 1290 to 1578 1 to 289       289/289
(100 %)
2 diff
(99.4 %id)
BX383727   .a 1305 to 1580 283 to 1   fully sequenced,   283/283
(100 %)
7 diff
(97.6 %id)
FN047102 breast carcinoma .a 1307 to 1374 68 to 1     Submitted on the opposite strand 68/69
(98 %)
2 diff
(97.2 %id)
FN080732 breast carcinoma .a 1358 to 1475 1 to 119       119/119
(100 %)
1 diff
(99.2 %id)
AA715054 Ewing's sarcoma .a 1397 to 1628 232 to 1       232/232
(100 %)
6 diff
(97.5 %id)
DV459980 cochlea, ear .a 1413 to 1587 175 to 1     Submitted on the opposite strand 175/175
(100 %)
0 diff
(100 %id)
AW149852 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1442 to 1640 212 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 199/199
(100 %)
2 diff
(99.0 %id)
FN166175 breast carcinoma .a 1453 to 1560 105 to 1     Submitted on the opposite strand 105/105
(100 %)
4 diff
(96.2 %id)
FN175055 breast carcinoma .a 1460 to 1563 1 to 104       104/104
(100 %)
0 diff
(100 %id)
FN095190 breast carcinoma .a 1475 to 1573 1 to 95       95/96
(98 %)
3 diff
(96.9 %id)
BM967152 Islets of Langerhans, Pancreas .a 1477 to 1633 1 to 167       167/167
(100 %)
13 diff
(92.3 %id)
BM967313 Islets of Langerhans, Pancreas .a 1477 to 1642 1 to 167       167/188
(88 %)
4 diff
(97.9 %id)
FN068537 breast carcinoma .a 1481 to 1586 1 to 106       106/106
(100 %)
0 diff
(100 %id)
CK823433 Islets of Langerhans, Pancreas .a 1498 to 1629 19 to 150   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 132/154
(85 %)
3 diff
(98.1 %id)
FN094262 breast carcinoma .a 1506 to 1597 1 to 91       91/92
(98 %)
2 diff
(97.9 %id)
CR613146 HeLa cells Cot 25-normalized .b 1 to 1749 1 to 1749 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1749/1749
(100 %)
0 diff
(100 %id)
BX342040   .b 16 to 1021 13 to 1005       993/1015
(97 %)
22 diff
(97.9 %id)
BF699851 brain, primitive neuroectoderm .b 52 to 619 15 to 583       569/583
(97 %)
8 diff
(98.7 %id)
BG532002 embryonal carcinoma, testis .b 52 to 846 13 to 811       799/905
(88 %)
30 diff
(96.7 %id)
BX350516   .b 139 to 1042 898 to 4       895/911
(98 %)
16 diff
(98.3 %id)
BQ024942 placenta .c 1 to 361 415 to 48   tiling clone, AAA   364/405
(89 %)
0 diff
(100 %id)
AK027572   .c 1 to 2381 2 to 2382 exact tiling clone, available from FLJ,   2382/2382
(100 %)
3 diff
(99.9 %id)
DA733464   .c 1 to 635 2 to 637   capped   636/636
(100 %)
6 diff
(99.1 %id)
BQ082025 stomach .c 492 to 898 1 to 410       410/410
(100 %)
7 diff
(98.3 %id)
AK074934   .c 592 to 2416 1 to 1823 A49T D59N available from FLJ,   1823/1823
(100 %)
4 diff
(99.8 %id)
NM_153331.3   .c 592 to 2429 1 to 1838 exact RefSeq,   1838/1840
(99 %)
5 diff
(99.8 %id)
DA735658   .c 593 to 1449 2 to 863   capped   862/862
(100 %)
9 diff
(99.0 %id)
BC022893 lung .c 853 to 2413 4 to 1565 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1562/1564
(99 %)
2 diff
(99.9 %id)
BG537096 lung .c 853 to 1523 1 to 670       670/670
(100 %)
7 diff
(99.0 %id)
DB365382   .c 1803 to 2381 579 to 1       579/581
(99 %)
1 diff
(99.9 %id)
DB367970   .c 1877 to 2416 544 to 1   tiling clone,   544/544
(100 %)
13 diff
(97.7 %id)
CN263177 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1 to 474 1 to 474 exact tiling clone,   474/474
(100 %)
0 diff
(100 %id)
R83458 liver and spleen .e 1 to 383 12 to 400 I8X W23X tiling clone,   389/410
(94 %)
7 diff
(98.3 %id)
DA422328 cervix .e 122 to 684 2 to 564 exact tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
AA315333 colon Gene KCTD6, variant not shown         This clone was ignored    
DB306903 caudate nucleus Gene KCTD6, variant not shown         This clone was ignored    
DA267755 caudate nucleus Gene KCTD6, variant not shown       capped This clone was ignored    
AV653264 corresponding non cancerous liver tissue Gene KCTD6, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI