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Gene KCNS1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
59 supporting clones for gene KCNS1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK289735 brain .a 1 to 2128 2 to 2129 exact tiling clone,   2129/2129
(100 %)
0 diff
(100 %id)
DA214578 brain .a 1 to 429 2 to 430   capped   429/429
(100 %)
2 diff
(99.6 %id)
DA231979 brain .a 42 to 606 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
TI_2194645462   .a 136 to 1260 42 to 1162       1121/1285
(87 %)
13 diff
(99.0 %id)
BC132957 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 142 to 2277 1 to 2136 exact tiling clone,   2136/2136
(100 %)
0 diff
(100 %id)
BC132959 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 142 to 2277 1 to 2136 I489V     2136/2136
(100 %)
1 diff
(100.0 %id)
BC144234 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 142 to 2277 1 to 2136 I489V     2136/2136
(100 %)
1 diff
(100.0 %id)
AF043473 lens epithelium .b 1 to 4535 48 to 4586 exact tiling clone, AAA   4543/4586
(99 %)
16 diff
(99.7 %id)
NM_002251.3   .b 1 to 4534 5 to 4538 exact RefSeq, AAA   4538/4538
(100 %)
0 diff
(100 %id)
BC075033 Brain, PCR rescued clones .b 367 to 2014 1 to 1648 I489V available from MGC,   1648/1648
(100 %)
1 diff
(100.0 %id)
BC075034 Brain, PCR rescued clones .b 367 to 2014 1 to 1648 I489V available from MGC,   1648/1648
(100 %)
1 diff
(100.0 %id)
DB459766 testis .b 581 to 1032 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
DA337694 hippocampus .b 603 to 1193 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
CD614377   .b 616 to 744 1 to 128       128/129
(99 %)
5 diff
(96.2 %id)
CD614378   .b 616 to 744 128 to 1       128/128
(100 %)
5 diff
(96.1 %id)
CD614379   .b 616 to 744 1 to 128       128/129
(99 %)
5 diff
(96.2 %id)
CD614380   .b 616 to 744 128 to 1       128/128
(100 %)
5 diff
(96.1 %id)
TI_1752769540   .b 714 to 1009 1 to 294       294/322
(91 %)
17 diff
(94.8 %id)
H43171 brain .b 735 to 828 1 to 94       94/94
(100 %)
3 diff
(96.9 %id)
DA326581 hippocampus .b 774 to 1292 2 to 521   capped   520/520
(100 %)
2 diff
(99.7 %id)
H99478 melanocyte .b 1190 to 1604 45 to 463     Submitted on the opposite strand 419/464
(90 %)
16 diff
(96.6 %id)
BX103154 brain .b 1194 to 1826 634 to 1     Submitted on the opposite strand 634/634
(100 %)
1 diff
(99.9 %id)
H85454 melanocyte .b 1195 to 1468 1 to 278     Submitted on the opposite strand 278/278
(100 %)
9 diff
(96.8 %id)
H18119 brain .b 1210 to 1619 1 to 413     Submitted on the opposite strand 413/413
(100 %)
9 diff
(97.9 %id)
H43697 brain .b 1215 to 1353 1 to 139     Submitted on the opposite strand 139/139
(100 %)
0 diff
(100 %id)
H49525 brain .b 1220 to 1621 1 to 405     Submitted on the opposite strand 405/405
(100 %)
7 diff
(98.3 %id)
H51391 brain .b 1230 to 1353 1 to 124     Submitted on the opposite strand 124/124
(100 %)
0 diff
(100 %id)
H20175 brain .b 1233 to 1353 1 to 121     Submitted on the opposite strand 121/121
(100 %)
2 diff
(98.4 %id)
TI_1752769538   .b 1258 to 1457 1 to 200       200/204
(98 %)
6 diff
(97.1 %id)
TI_2194645843   .b 1303 to 2483 1235 to 66       1170/1299
(90 %)
8 diff
(99.4 %id)
H42586 brain .b 1361 to 1748 399 to 5     Submitted on the opposite strand 395/407
(97 %)
7 diff
(98.3 %id)
H49759 brain .b 1378 to 1828 466 to 13     Submitted on the opposite strand 454/466
(97 %)
9 diff
(98.1 %id)
H20365 brain .b 1387 to 1828 445 to 1     Submitted on the opposite strand 445/446
(99 %)
19 diff
(95.8 %id)
BF914749 uterus_tumor .b 1437 to 1925 1 to 489       489/489
(100 %)
1 diff
(99.8 %id)
BF914751 uterus_tumor .b 1437 to 1872 1 to 436       436/436
(100 %)
2 diff
(99.6 %id)
H18164 brain .b 1437 to 1827 396 to 1     Submitted on the opposite strand 396/396
(100 %)
10 diff
(97.5 %id)
H51390 brain .b 1443 to 1827 389 to 1     Submitted on the opposite strand 387/395
(97 %)
15 diff
(96.3 %id)
H85737 melanocyte .b 1449 to 1780 344 to 11     Submitted on the opposite strand 332/347
(95 %)
10 diff
(97.2 %id)
TI_2194644557   .b 1569 to 2483 8 to 920       913/1047
(87 %)
15 diff
(98.6 %id)
TI_2194644563   .b 1586 to 2118 24 to 556       533/605
(88 %)
24 diff
(96.1 %id)
H18261 brain .b 1603 to 1786 184 to 1     Submitted on the opposite strand 184/184
(100 %)
3 diff
(98.4 %id)
TI_2194643384   .b 1832 to 2483 722 to 71       652/730
(89 %)
0 diff
(100 %id)
TI_1752768780   .b 1940 to 2479 601 to 63     Submitted on the opposite strand 539/601
(89 %)
0 diff
(100 %id)
DA307335 hippocampus .b 2064 to 2524 2 to 462   tiling clone, capped   461/461
(100 %)
0 diff
(100 %id)
TI_1752768776   .b 2218 to 2479 322 to 61     Submitted on the opposite strand 262/322
(81 %)
0 diff
(100 %id)
H43779 brain .b 2281 to 2779 530 to 14     Submitted on the opposite strand 517/533
(96 %)
0 diff
(100 %id)
BP253853 Kidney .b 2354 to 2937 1 to 584   tiling clone,   584/584
(100 %)
1 diff
(99.9 %id)
R88616 brain .b 2375 to 2779 424 to 13     Submitted on the opposite strand 412/428
(96 %)
0 diff
(100 %id)
R87913 brain .b 2504 to 2779 294 to 13     Submitted on the opposite strand 282/294
(95 %)
0 diff
(100 %id)
AA788916 schizophrenic brain S-11 frontal lobe .b 2580 to 3045 464 to 1       464/464
(100 %)
7 diff
(98.5 %id)
R89510.
matches multiple genes
brain .b 2680 to 2779 112 to 13     Submitted on the opposite strand, also hits gene MOG 100/112
(89 %)
0 diff
(100 %id)
BF037198 adenocarcinoma, ovary .b 3148 to 3703 233 to 782       550/884
(62 %)
21 diff
(97.7 %id)
BE819000 breast_normal .b 3406 to 3841 15 to 448   tiling clone,   434/448
(96 %)
6 diff
(98.7 %id)
T08732   .b 3503 to 3949 1 to 451       451/451
(100 %)
6 diff
(98.7 %id)
BF914710 uterus_tumor .b 3973 to 4323 352 to 1   tiling clone, Submitted on the opposite strand 352/352
(100 %)
13 diff
(96.4 %id)
DB525206 testis .b 4093 to 4534 1 to 442   tiling clone, Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
BF946360 nervous_normal .b 4151 to 4324 1 to 174       174/174
(100 %)
11 diff
(93.7 %id)
DA216883 brain Gene KCNS1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA228573 brain Gene KCNS1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C