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Gene KCNQ5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
123 supporting clones for gene KCNQ5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA236282 brain .a 1 to 595 2 to 596   tiling clone, capped   595/595
(100 %)
3 diff
(99.5 %id)
NM_001160133.1   .a 563 to 7199 1 to 6637 exact RefSeq, AAA   6637/6637
(100 %)
0 diff
(100 %id)
CD629760   .a 2193 to 2803 628 to 19   tiling clone,   610/714
(85 %)
14 diff
(98.1 %id)
TI_2194578989   .a 2310 to 3450 1 to 1134   tiling clone,   1134/1229
(92 %)
17 diff
(98.7 %id)
TI_2194578992   .a 2314 to 3146 5 to 839       835/839
(99 %)
11 diff
(98.7 %id)
BF959488 nervous_normal .a 2362 to 2843 10 to 491       482/491
(98 %)
7 diff
(98.6 %id)
BF945327 nervous_normal .a 2366 to 2629 267 to 6     Submitted on the opposite strand 262/267
(98 %)
0 diff
(100 %id)
BF954374 nervous_normal .a 2366 to 2574 16 to 224       209/224
(93 %)
12 diff
(94.7 %id)
BI034993 nervous_normal .a 2366 to 2911 1 to 546       546/547
(99 %)
4 diff
(99.3 %id)
BI033850 nervous_normal .a 2369 to 2942 570 to 1       570/570
(100 %)
7 diff
(98.8 %id)
AK316070 hippocampus .a 2406 to 4210 1 to 1805   tiling clone,   1805/1805
(100 %)
1 diff
(100.0 %id)
DA334030 hippocampus .a 2407 to 2969 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
AK299741 brain .a 2408 to 3880 1 to 1473       1473/1473
(100 %)
2 diff
(99.9 %id)
DC376498 brain .a 2408 to 2974 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
DA775838 brain .a 2420 to 2989 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA773989 brain .a 2446 to 3029 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BF959996 nervous_normal .a 2451 to 2951 506 to 7       500/506
(98 %)
0 diff
(100 %id)
BQ339931 nervous_normal .a 2506 to 2908 166 to 568       403/568
(70 %)
7 diff
(98.8 %id)
BF943257 nervous_normal .a 2526 to 2949 435 to 13     Submitted on the opposite strand 423/435
(97 %)
0 diff
(100 %id)
DB305717 brain .a 4732 to 5281 550 to 1   tiling clone,   550/550
(100 %)
0 diff
(100 %id)
NM_001160132.1   .b 1 to 6610 1 to 6610 exact RefSeq, AAA   6610/6610
(100 %)
0 diff
(100 %id)
NM_019842.3   .c 1 to 6580 1 to 6580 exact RefSeq, AAA   6580/6580
(100 %)
0 diff
(100 %id)
AF249278   .c 239 to 3312 1 to 3074 K92S P93R tiling clone,   3076/3074
(100 %)
6 diff
(99.9 %id)
AF202977 brain .c 453 to 3589 1 to 3137   tiling clone,   3137/3137
(100 %)
1 diff
(100.0 %id)
AF263835 brain; retina .c 561 to 3392 1 to 2832       2832/2832
(100 %)
8 diff
(99.8 %id)
DA808011 brain .c 1147 to 1709 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
CD629751   .c 1248 to 1815 1 to 568       568/624
(91 %)
3 diff
(99.6 %id)
CD629753   .c 1248 to 1692 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
CD629755   .c 1248 to 1938 1 to 690       690/691
(99 %)
13 diff
(98.2 %id)
CD629757   .c 1248 to 1842 1 to 594       594/594
(100 %)
3 diff
(99.5 %id)
CD629759   .c 1248 to 1815 1 to 567       567/635
(89 %)
4 diff
(99.4 %id)
CD629761   .c 1248 to 1815 1 to 564       564/580
(97 %)
10 diff
(98.3 %id)
CD629763   .c 1248 to 1894 1 to 643       643/643
(100 %)
8 diff
(98.8 %id)
CD629765   .c 1248 to 1843 1 to 596       596/599
(99 %)
2 diff
(99.7 %id)
DA504357 brain .c 1266 to 1826 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA305215 hippocampus .c 1364 to 1937 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
CD629764   .c 1448 to 2161 731 to 1       731/737
(99 %)
27 diff
(96.4 %id)
CD629756   .c 1466 to 2193 732 to 3       730/732
(99 %)
7 diff
(99.1 %id)
CD629754   .c 1470 to 2204 740 to 4       737/742
(99 %)
9 diff
(98.8 %id)
CD629766   .c 1483 to 2193 717 to 3       715/717
(99 %)
8 diff
(98.9 %id)
DA233788 brain .c 1486 to 2052 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
CD629752   .c 1489 to 2204 724 to 4       721/724
(99 %)
15 diff
(98.0 %id)
CD629758   .c 1529 to 2202 678 to 5       674/678
(99 %)
2 diff
(99.8 %id)
NM_001160130.1   .d 1 to 6553 1 to 6553 exact RefSeq, AAA   6553/6553
(100 %)
0 diff
(100 %id)
BC117359 Placenta, PCR rescued clones .d 330 to 3159 1 to 2830 exact tiling clone,   2830/2831
(99 %)
1 diff
(100.0 %id)
BC143554 Placenta, PCR rescued clones .d 330 to 3159 1 to 2830 exact     2830/2830
(100 %)
2 diff
(100.0 %id)
TI_2194578959   .d 935 to 1907 12 to 982       971/1223
(79 %)
12 diff
(99.1 %id)
TI_1320130453   .d 1039 to 2135 6 to 1096       1091/1236
(88 %)
20 diff
(98.4 %id)
TI_2194578954   .d 1041 to 2138 10 to 1096       1087/1220
(89 %)
27 diff
(97.8 %id)
TI_2194578995   .d 1042 to 1868 13 to 843       831/846
(98 %)
18 diff
(97.9 %id)
TI_2194578730   .d 1266 to 2459 10 to 1188       1179/1230
(95 %)
24 diff
(98.1 %id)
TI_2194578623   .d 1267 to 2482 17 to 1248       1232/1268
(97 %)
46 diff
(96.4 %id)
TI_2194578626   .d 1267 to 2130 17 to 881       865/881
(98 %)
14 diff
(98.5 %id)
BE158938 head_neck .d 1278 to 1924 13 to 658       646/658
(98 %)
10 diff
(98.5 %id)
TI_1320130099   .d 1486 to 2686 1 to 1197       1197/1258
(95 %)
21 diff
(98.4 %id)
TI_2194578624   .d 1487 to 2652 1 to 1162       1162/1245
(93 %)
28 diff
(97.8 %id)
TI_2194578731   .d 1489 to 2634 1 to 1140       1140/1268
(89 %)
20 diff
(98.5 %id)
TI_2194579028   .d 1489 to 2266 1 to 782       782/881
(88 %)
32 diff
(96.4 %id)
TI_1320130195   .d 1489 to 2583 1 to 1082       1082/1234
(87 %)
14 diff
(98.9 %id)
NM_001160134.1   .e 1 to 6250 1 to 6250 exact RefSeq, AAA   6250/6250
(100 %)
0 diff
(100 %id)
DA801374 brain .e 2 to 569 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DA326191 hippocampus .e 73 to 552 2 to 482   capped   481/481
(100 %)
1 diff
(99.8 %id)
DA334879 hippocampus .e 105 to 573 2 to 471   capped   470/470
(100 %)
2 diff
(99.6 %id)
BU187082 eye, retinoblastoma .e 265 to 745 1 to 481   available from MGC,   481/895
(53 %)
2 diff
(99.8 %id)
TI_2194576028   .e 330 to 1375 47 to 1087       1041/1267
(82 %)
13 diff
(99.0 %id)
TI_2194578111   .e 330 to 1268 45 to 982       938/1213
(77 %)
9 diff
(99.3 %id)
TI_2194578113   .e 330 to 1449 49 to 1165       1120/1228
(91 %)
17 diff
(98.7 %id)
TI_1320129869   .e 330 to 1307 49 to 1024   tiling clone,   976/1209
(80 %)
9 diff
(99.3 %id)
AK299550 brain .e 401 to 3527 1 to 3126   tiling clone,   3126/3126
(100 %)
6 diff
(99.9 %id)
DA775186 brain .e 402 to 745 2 to 345   capped   344/454
(75 %)
4 diff
(99.2 %id)
TI_1320129870   .e 836 to 1445 554 to 1153       600/681
(88 %)
18 diff
(97.4 %id)
BF954375 nervous_normal .e 1594 to 1925 186 to 517       332/517
(64 %)
6 diff
(98.9 %id)
DA788391 brain .e 1597 to 2173 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
TI_2194578955   .e 1608 to 2617 1 to 995       995/1212
(82 %)
26 diff
(97.9 %id)
TI_2194578996   .e 1608 to 2446 1 to 837       837/841
(99 %)
20 diff
(97.7 %id)
TI_1320130455   .e 1609 to 2753 1 to 1119       1119/1228
(91 %)
31 diff
(97.5 %id)
TI_2194578112   .e 1725 to 2863 1180 to 50     Submitted on the opposite strand 1131/1279
(88 %)
14 diff
(99.0 %id)
TI_1320130098   .e 1726 to 2064 778 to 1113       336/420
(80 %)
21 diff
(95.0 %id)
BQ340178 nervous_normal .e 1727 to 1993 1 to 266       266/266
(100 %)
3 diff
(98.9 %id)
TI_2194578114   .e 1729 to 2863 1169 to 40     Submitted on the opposite strand 1130/1226
(92 %)
16 diff
(98.7 %id)
TI_2194576030   .e 1747 to 2863 1167 to 51     Submitted on the opposite strand 1117/1311
(85 %)
5 diff
(99.7 %id)
TI_2194578627   .e 1942 to 2737 1 to 795       795/795
(100 %)
9 diff
(98.9 %id)
TI_2194578732   .e 1954 to 2856 8 to 909       902/1233
(73 %)
3 diff
(99.8 %id)
TI_2194578625   .e 1955 to 2856 10 to 911       902/1103
(81 %)
3 diff
(99.8 %id)
TI_2194578957   .e 2065 to 2856 1 to 791       791/1203
(65 %)
4 diff
(99.7 %id)
TI_2194578990   .e 2066 to 2841 1 to 775       775/798
(97 %)
6 diff
(99.3 %id)
BF240146 bone marrow, from chronic myelogenous leukemia .e 2147 to 2897 1 to 754       754/908
(83 %)
43 diff
(95.3 %id)
CR735619 adenocarcinoma, Prostate .e 2260 to 2636 1 to 377       377/377
(100 %)
0 diff
(100 %id)
BG532543 embryonal carcinoma, testis .e 2260 to 2991 1 to 734   tiling clone,   734/734
(100 %)
6 diff
(99.2 %id)
TI_2194578952   .e 2416 to 2856 1 to 439       439/1219
(36 %)
7 diff
(99.5 %id)
TI_2194578994   .e 2424 to 2863 9 to 446       438/1036
(42 %)
5 diff
(99.6 %id)
TI_1320130451   .e 2435 to 2856 17 to 438       422/1228
(34 %)
1 diff
(100.0 %id)
BE177584 head_neck .e 2653 to 2888 248 to 13     Submitted on the opposite strand 236/248
(95 %)
0 diff
(100 %id)
DA242878 brain .e 2881 to 3375 2 to 497   tiling clone, capped   496/496
(100 %)
1 diff
(99.8 %id)
DA203115 brain .e 3394 to 3912 2 to 520   tiling clone, capped   519/521
(99 %)
1 diff
(99.9 %id)
DB304075 brain .e 5700 to 6254 555 to 1   tiling clone,   555/555
(100 %)
0 diff
(100 %id)
TI_2194576412   .f 1 to 860 62 to 920     Submitted on the opposite strand 859/920
(93 %)
9 diff
(99.1 %id)
TI_2194578116   .f 1 to 1009 64 to 1077     Submitted on the opposite strand 1011/1233
(81 %)
22 diff
(98.3 %id)
BC143555 Placenta, PCR rescued clones .f 1 to 2703 1 to 2703 R196W tiling clone,   2703/2703
(100 %)
1 diff
(100.0 %id)
BC050689 Eye, retinoblastoma .g 1 to 1466 1 to 1466 exact tiling clone, available from MGC, AAA   1466/1466
(100 %)
2 diff
(99.9 %id)
BU621594 cell lines, Chondrosarcoma .h 1 to 647 665 to 19 G23A tiling clone, AAA   647/647
(100 %)
1 diff
(99.9 %id)
BG218030   .i 1 to 322 1 to 322 exact tiling clone, AAA   322/322
(100 %)
4 diff
(98.8 %id)
DA792046 brain .j-u 1 to 547 2 to 549   tiling clone, capped   548/548
(100 %)
3 diff
(99.5 %id)
DB294076   .j-u 9 to 833 2 to 825   tiling clone, capped   824/826
(99 %)
5 diff
(99.4 %id)
TI_153991764   .j-u 253 to 853 676 to 82   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 595/809
(73 %)
9 diff
(98.9 %id)
AW207530   .j-u 450 to 853 421 to 18   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 404/404
(100 %)
0 diff
(100 %id)
BF958757 nervous_normal .j-u 454 to 839 11 to 401       391/403
(97 %)
24 diff
(94.1 %id)
BQ343012 nervous_normal .j-u 456 to 1011 1 to 563   tiling clone,   563/564
(99 %)
38 diff
(93.3 %id)
BU599512 mixed (pool of 40 RNAs) .j-u 1672 to 2465 1 to 802   tiling clone,   802/802
(100 %)
12 diff
(98.6 %id)
AA985133 schizophrenic brain S-11 frontal lobe .j-u 1731 to 2057 1 to 327     Submitted on the opposite strand 327/327
(100 %)
3 diff
(99.1 %id)
CD679432 eye, Trabecular meshwork .j-u 1750 to 2356 1 to 606       606/611
(99 %)
2 diff
(99.7 %id)
BG118019 adenocarcinoma, cell line, Liver .j-u 1885 to 2608 1 to 721       721/821
(87 %)
12 diff
(98.6 %id)
H25990 breast .j-u 2121 to 2346 1 to 226       226/226
(100 %)
0 diff
(100 %id)
DR977915 brain .j-u 2128 to 2192 1 to 64     Submitted on the opposite strand 64/67
(95 %)
4 diff
(94.1 %id)
DB384060   .j-u 2135 to 2683 541 to 1       541/548
(98 %)
16 diff
(97.1 %id)
AW665381 pooled .j-u 2193 to 2694 510 to 9       502/510
(98 %)
0 diff
(100 %id)
BX099933 whole brain .j-u 2230 to 2774 561 to 16       546/561
(97 %)
0 diff
(100 %id)
BF513800   .j-u 2284 to 2771 503 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 488/488
(100 %)
0 diff
(100 %id)
AA836090 germinal center B cell .j-u 2335 to 2693 379 to 21   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 359/359
(100 %)
1 diff
(99.8 %id)
BE467066 carcinoid, lung .j-u 2358 to 2747 1 to 390     Submitted on the opposite strand 390/390
(100 %)
0 diff
(100 %id)
R51613 whole brain .j-u 2374 to 2774 419 to 7       413/427
(96 %)
0 diff
(100 %id)
AI803833 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .j-u 2526 to 2780 255 to 1   tiling clone,   255/255
(100 %)
0 diff
(100 %id)
BG185229   .k-u 1 to 255 1 to 255 exact tiling clone, AAA   255/255
(100 %)
3 diff
(98.9 %id)
BG185740   .k-u 2 to 255 1 to 254 exact tiling clone, AAA   254/254
(100 %)
3 diff
(98.9 %id)
TI_2194578118   Gene KCNQ5, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
CD629762   Gene KCNQ5, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI