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Gene KCNQ3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
39 supporting clones for gene KCNQ3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC128576 PCR rescued clones .a 146 to 2801 68 to 2723 G25A A26G A27D G28E G29E ... tiling clone, Suspected internal deletion 2723/2723
(100 %)
2 diff
(100.0 %id)
NM_004519.2   .b 1 to 3097 1 to 3097 exact RefSeq,   3097/3097
(100 %)
0 diff
(100 %id)
AF033347   .b 367 to 3096 1 to 2730   tiling clone, AAA   2730/2730
(100 %)
0 diff
(100 %id)
AW135705   .b 441 to 779 1 to 339     Submitted on the opposite strand 339/339
(100 %)
1 diff
(99.8 %id)
AW205596   .b 441 to 946 1 to 506     Submitted on the opposite strand 506/506
(100 %)
1 diff
(99.9 %id)
AA001392 eye, retina .b 464 to 1025 1 to 563     Submitted on the opposite strand 563/563
(100 %)
14 diff
(97.6 %id)
AA019129 eye, retina .b 464 to 613 1 to 151     Submitted on the opposite strand 151/244
(61 %)
2 diff
(99.2 %id)
CD618896   .b 474 to 655 1 to 182       182/182
(100 %)
0 diff
(100 %id)
CD618897   .b 474 to 654 181 to 1       181/181
(100 %)
0 diff
(100 %id)
CD618900   .b 474 to 654 182 to 1       182/182
(100 %)
0 diff
(100 %id)
CD618901   .b 474 to 655 1 to 183       183/183
(100 %)
2 diff
(99.0 %id)
CD618902   .b 474 to 655 1 to 182       182/182
(100 %)
0 diff
(100 %id)
H86059 eye, retina .b 492 to 753 1 to 263     Submitted on the opposite strand 263/269
(97 %)
1 diff
(99.7 %id)
AK296293 thalamus .b 605 to 3126 56 to 2577       2527/2577
(98 %)
1 diff
(100.0 %id)
DC341985 thalamus .b 605 to 1148 56 to 599       549/599
(91 %)
1 diff
(99.9 %id)
AW367861 head_neck .b 710 to 922 1 to 215       215/215
(100 %)
9 diff
(95.9 %id)
DA769675 brain .b 838 to 1423 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA196039 amygdala .b 1640 to 2212 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
R36327 whole brain .b 1655 to 2111 1 to 470       470/482
(97 %)
20 diff
(95.9 %id)
H08544 whole brain .b 1655 to 2159 1 to 514       512/515
(99 %)
18 diff
(96.6 %id)
T78692 whole brain .b 1685 to 2124 1 to 448       447/449
(99 %)
12 diff
(97.4 %id)
BF352136 head_neck .b 2052 to 2463 20 to 432       413/441
(93 %)
14 diff
(96.9 %id)
BE699949 nervous_normal .b 2391 to 2576 186 to 1       186/186
(100 %)
0 diff
(100 %id)
AI125802   .b 2401 to 2882 486 to 5       482/486
(99 %)
0 diff
(100 %id)
DA771700 brain .b 2518 to 3079 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BX110266 whole brain .b 2575 to 3094 538 to 18       521/538
(96 %)
0 diff
(100 %id)
H08545 whole brain .b 2671 to 3096 446 to 16   AAA   431/431
(100 %)
13 diff
(97.0 %id)
R49258 whole brain .b 2873 to 3096 240 to 16   AAA   225/225
(100 %)
3 diff
(98.7 %id)
AW374972 colon .b 2983 to 3547 569 to 7       563/569
(98 %)
0 diff
(100 %id)
AV728013 hypothalamus .b 3036 to 3767 12 to 741   tiling clone,   730/749
(97 %)
19 diff
(97.5 %id)
AA019128 eye, retina .b 3261 to 3575 329 to 14   tiling clone, Submitted on the opposite strand 316/329
(96 %)
0 diff
(100 %id)
DA359688 subthalamic nucleus .b 3590 to 4163 2 to 576   tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
R20451 whole brain .b 3602 to 4020 1 to 428       428/432
(99 %)
15 diff
(96.6 %id)
H11804 whole brain .b 3602 to 4115 1 to 523   tiling clone,   523/525
(99 %)
21 diff
(96.0 %id)
BE894188 melanotic melanoma, skin .b 3826 to 4546 1 to 738       738/773
(95 %)
28 diff
(96.4 %id)
AI124734 brain, pooled frontal lobe .b 3857 to 4267 411 to 1   tiling clone,   411/411
(100 %)
2 diff
(99.6 %id)
CK005312 brain/CNS, Human Brain - Frontal Cortex .b 4189 to 4853 1 to 660   tiling clone,   660/661
(99 %)
7 diff
(99.0 %id)
AV727603 hypothalamus .b 4449 to 4905 474 to 17     Submitted on the opposite strand 458/630
(72 %)
0 diff
(100 %id)
BX108557 whole brain .b 4627 to 5159 547 to 15   tiling clone, AAA   533/533
(100 %)
0 diff
(100 %id)
H11730 whole brain .b 4754 to 5156 419 to 14       406/433
(93 %)
0 diff
(100 %id)
AB208890 brain .c 1 to 3464 1 to 3464 C181Y tiling clone,   3464/3464
(100 %)
2 diff
(100.0 %id)
BX345342   Gene KCNQ3, variant not shown         This clone was ignored    
BX383459   Gene KCNQ3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI