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Gene KCNN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
35 supporting clones for gene KCNN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_002248.3   KCNN1.a 1 to 2651 1 to 2657 exact RefSeq,   2651/2657
(99 %)
2 diff
(100.0 %id)
BC075037 Fetal Brain, PCR rescued clones KCNN1.a 291 to 1975 1 to 1691 exact tiling clone, available from MGC,   1685/1691
(99 %)
2 diff
(99.9 %id)
BX393926 Neuroblastoma Cot 25-normalized KCNN1.a 348 to 854 515 to 9     Submitted on the opposite strand 507/519
(97 %)
0 diff
(100 %id)
BU153891 eye, retinoblastoma KCNN1.a 351 to 890 543 to 1     Submitted on the opposite strand 543/543
(100 %)
7 diff
(98.8 %id)
TI_44185383   KCNN1.a 675 to 1383 27 to 734       708/734
(96 %)
7 diff
(99.1 %id)
BI522613 brain KCNN1.a 676 to 1383 1 to 707       707/707
(100 %)
1 diff
(99.9 %id)
F11363 brain, total brain KCNN1.a 1197 to 1474 1 to 278       278/278
(100 %)
1 diff
(99.7 %id)
M62043   KCNN1.a 1262 to 1548 1 to 289       289/294
(98 %)
9 diff
(97.0 %id)
BM930603 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid KCNN1.a 1490 to 2203 1 to 715       709/722
(98 %)
7 diff
(99.1 %id)
AA350009 brain KCNN1.a 1649 to 1829 182 to 1     Submitted on the opposite strand 182/182
(100 %)
1 diff
(99.5 %id)
AI937237 anaplastic oligodendroglioma, brain KCNN1.a 1771 to 2236 466 to 1       466/466
(100 %)
1 diff
(99.8 %id)
AI363154 brain, glioblastoma (pooled) KCNN1.a 1772 to 2236 483 to 19   AAA   465/465
(100 %)
24 diff
(94.9 %id)
AA351095 brain KCNN1.a 1958 to 2224 267 to 1   tiling clone, Submitted on the opposite strand 267/267
(100 %)
1 diff
(99.7 %id)
AA325431 brain, cerebellum KCNN1.a 2039 to 2380 1 to 344   tiling clone,   344/344
(100 %)
3 diff
(99.2 %id)
C15510   KCNN1.a 2232 to 2522 1 to 289   tiling clone,   289/294
(98 %)
5 diff
(98.3 %id)
D60120   KCNN1.a 2232 to 2516 1 to 284       284/284
(100 %)
3 diff
(99.0 %id)
D60321   KCNN1.a 2232 to 2562 1 to 330       330/334
(98 %)
6 diff
(98.3 %id)
D61063   KCNN1.a 2232 to 2630 1 to 401       401/401
(100 %)
4 diff
(99.1 %id)
AW292489   KCNN1.a 2347 to 2650 322 to 19   AAA   304/321
(94 %)
1 diff
(99.7 %id)
AI825516 pooled germ cell tumors KCNN1.a 2380 to 2651 274 to 3       272/274
(99 %)
0 diff
(100 %id)
AW594619 pooled germ cell tumors KCNN1.a 2380 to 2651 277 to 6   tiling clone,   272/277
(98 %)
0 diff
(100 %id)
BE504989 pooled germ cell tumors KCNN1.a 2380 to 2651 277 to 6       272/277
(98 %)
0 diff
(100 %id)
BF062198 pooled germ cell tumors KCNN1.a 2380 to 2651 277 to 6       272/277
(98 %)
0 diff
(100 %id)
F09023 brain, total brain KCNN1.a 2420 to 2646 227 to 1       227/227
(100 %)
2 diff
(99.2 %id)
AW086176 ovary, papillary serous carcinoma KCNN1.a 2538 to 2810 312 to 40   tiling clone, AAA   273/273
(100 %)
15 diff
(94.6 %id)
DB471730 hippocampus KCNN1.b 1 to 499 1 to 500 P23H P46Q N85K A143S R144P ... tiling clone,   500/500
(100 %)
6 diff
(98.8 %id)
BM718136 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid KCNN1.c 1 to 439 1 to 448 L11A R12Q S13K V14L K15R ... tiling clone,   448/448
(100 %)
4 diff
(99.2 %id)
BX106650 brain, glioblastoma (pooled) KCNN1.c 6 to 290 1 to 285   tiling clone,   285/285
(100 %)
0 diff
(100 %id)
DR003486 fetal brain KCNN1.d 1 to 247 1 to 247   tiling clone,   247/247
(100 %)
4 diff
(98.4 %id)
DC360381   KCNN1.d 101 to 648 1 to 548   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
BM709030 eye, optic nerve KCNN1.e-u 1 to 422 1 to 422 exact tiling clone,   422/422
(100 %)
1 diff
(99.8 %id)
DB540478 hippocampus KCNN1.e-u 9 to 497 1 to 489   tiling clone, Submitted on the opposite strand 489/489
(100 %)
1 diff
(99.8 %id)
AA594089 gastric tumor, stomach KCNN1.f-u 1 to 370 370 to 1 exact tiling clone,   370/370
(100 %)
1 diff
(99.8 %id)
AB198191 fetal brain Gene KCNN1, variant not shown         Suspected internal deletion, this clone was ignored    
AK298170   Gene KCNN1, variant not shown         This clone was ignored    
U69883 hippocampus Gene KCNN1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C