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Gene KCNMB1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene KCNMB1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA619309   .a 1 to 596 2 to 597   tiling clone, capped   596/596
(100 %)
3 diff
(99.5 %id)
BP340752 stomach mucosa .a 6 to 601 1 to 595       595/595
(100 %)
10 diff
(98.4 %id)
AK313979 cervix .a 22 to 1018 1 to 997 exact     997/997
(100 %)
2 diff
(99.8 %id)
BP377746 uterus .a 22 to 591 1 to 570       570/570
(100 %)
3 diff
(99.5 %id)
DA421122 cervix .a 23 to 607 2 to 587   capped   586/586
(100 %)
3 diff
(99.5 %id)
DB264195 uterus .a 23 to 380 2 to 359   tiling clone, capped   358/360
(99 %)
2 diff
(99.5 %id)
BI911978 leukocyte .a 31 to 738 32 to 742       711/745
(95 %)
12 diff
(98.4 %id)
TI_57234232   .a 31 to 738 32 to 742       711/745
(95 %)
12 diff
(98.4 %id)
BQ072610 leukocyte .a 32 to 921 19 to 917       899/1072
(83 %)
31 diff
(97.2 %id)
BI835962 pooled pancreas and spleen .a 43 to 793 1 to 761       759/798
(95 %)
30 diff
(96.3 %id)
TI_57164676   .a 43 to 793 65 to 825       759/862
(88 %)
32 diff
(96.3 %id)
NM_004137.2   .a 43 to 1560 1 to 1518 exact RefSeq,   1518/1518
(100 %)
1 diff
(100.0 %id)
DN990005 brain, whole brain .a 52 to 761 9 to 717       709/717
(98 %)
6 diff
(99.2 %id)
BP378774 uterus .a 275 to 824 1 to 550       550/550
(100 %)
6 diff
(99.0 %id)
BP329823 rectum .a 279 to 861 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP330879 rectum .a 282 to 863 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
U25138 myometrium .a 284 to 1559 1 to 1276 exact tiling clone,   1276/1277
(99 %)
2 diff
(99.9 %id)
T25114   .a 320 to 541 1 to 221       221/221
(100 %)
1 diff
(99.6 %id)
U61536 aortic smooth muscle .a 338 to 1430 1 to 1092 exact     1092/1092
(100 %)
4 diff
(99.7 %id)
AY515264   .a 339 to 1173 1 to 835 exact     835/835
(100 %)
1 diff
(99.9 %id)
BP424501 small intestine .a 341 to 859 1 to 519     Submitted on the opposite strand 519/519
(100 %)
0 diff
(100 %id)
CD516242 White Matter .a 364 to 1233 1 to 878 exact tiling clone,   878/885
(99 %)
13 diff
(98.6 %id)
AY044441 non-pregnant myometrium .a 377 to 1091 1 to 715 exact     715/715
(100 %)
0 diff
(100 %id)
AL048560 uterus .a 387 to 1074 1 to 697 S109T V110L D119X V120X E121G ...     697/700
(99 %)
19 diff
(97.3 %id)
U42600   .a 390 to 1430 1 to 1041 exact     1041/1041
(100 %)
1 diff
(100.0 %id)
AA447869.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 415 to 907 1 to 492     also hits gene MAN2A1 492/492
(100 %)
2 diff
(99.6 %id)
AF026002 lens epithelium .a 443 to 1018 1 to 576 exact     576/576
(100 %)
0 diff
(100 %id)
U38907   .a 443 to 1018 1 to 576 exact     576/576
(100 %)
0 diff
(100 %id)
BG984832 colon_normal .a 479 to 862 1 to 384       384/384
(100 %)
6 diff
(98.5 %id)
BG982510 colon_normal .a 552 to 884 332 to 1       332/332
(100 %)
3 diff
(99.1 %id)
BM694558 eye, RPE and Choroid .a 564 to 916 1 to 353     Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 353/353
(100 %)
2 diff
(99.5 %id)
BX103056 uterus .a 565 to 1244 1 to 680       680/680
(100 %)
0 diff
(100 %id)
AA151512 uterus .a 571 to 906 2 to 348       354/355
(99 %)
24 diff
(93.3 %id)
BF767818 colon_normal .a 597 to 833 348 to 112     Submitted on the opposite strand 237/348
(68 %)
1 diff
(99.8 %id)
AA554996 normal prostatic epithelial cells, Prostate .a 642 to 1020 1 to 377       377/377
(100 %)
7 diff
(98.2 %id)
AW973651   .a 649 to 1224 108 to 684       577/684
(84 %)
10 diff
(98.6 %id)
ES312378 frontal balding hair, skin .a 705 to 881 1 to 174       174/174
(100 %)
4 diff
(97.8 %id)
AA346415 heart .a 742 to 1115 7 to 380       374/380
(98 %)
5 diff
(98.7 %id)
AW953038   .a 742 to 1346 6 to 610       605/611
(99 %)
1 diff
(99.9 %id)
BG185384   .a 744 to 1556 1 to 811   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 811/811
(100 %)
28 diff
(96.6 %id)
TI_227713279   .a 744 to 1556 876 to 63   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 814/1035
(78 %)
18 diff
(98.3 %id)
FN057533 breast carcinoma .a 779 to 888 104 to 1     Submitted on the opposite strand 104/104
(100 %)
7 diff
(93.3 %id)
AI089652 uterus .a 811 to 1549 738 to 1       738/738
(100 %)
4 diff
(99.5 %id)
FN074425 breast carcinoma .a 845 to 915 71 to 1     Submitted on the opposite strand 71/72
(98 %)
0 diff
(100 %id)
CD367598 Alveolar Macrophage, lung .a 874 to 1556 700 to 19   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 682/682
(100 %)
3 diff
(99.6 %id)
AI309617 2 pooled tumors (clear cell type), Kidney .a 901 to 1558 662 to 2       661/662
(99 %)
0 diff
(100 %id)
AI903134 breast .a 939 to 1216 278 to 1       278/278
(100 %)
2 diff
(99.3 %id)
BU617276 Bone, Subchondral Bone .a 943 to 1556 632 to 19   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 614/614
(100 %)
2 diff
(99.7 %id)
CA307268 Alveolar Macrophage, lung .a 943 to 1556 632 to 19   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 614/614
(100 %)
1 diff
(99.9 %id)
AA094963   .a 946 to 1143 1 to 193       193/193
(100 %)
9 diff
(95.4 %id)
BU731162 eye, RPE and Choroid .a 946 to 1556 628 to 19   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 610/610
(100 %)
1 diff
(99.9 %id)
T85941 liver and spleen .a 1018 to 1283 9 to 276       268/276
(97 %)
4 diff
(98.6 %id)
AA029838 uterus .a 1020 to 1561 1 to 542   fully sequenced,   542/542
(100 %)
9 diff
(98.4 %id)
BE835526 prostate_normal .a 1021 to 1248 1 to 227       227/233
(97 %)
18 diff
(92.3 %id)
BG957382 colon .a 1058 to 1147 112 to 23       360/403
(89 %)
13 diff
(96.8 %id)
CB053209 leiomyosarcoma, soft tissue .a 1068 to 1556 512 to 24   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 489/489
(100 %)
4 diff
(99.2 %id)
BE839369 prostate_normal .a 1076 to 1451 10 to 383       374/383
(97 %)
7 diff
(98.2 %id)
AI093289 uterus .a 1078 to 1550 473 to 1       473/473
(100 %)
1 diff
(99.8 %id)
AI376341   .a 1081 to 1549 469 to 1       469/469
(100 %)
3 diff
(99.4 %id)
CA426968 Bone, Subchondral Bone .a 1083 to 1556 492 to 19   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 474/474
(100 %)
0 diff
(100 %id)
T90653 liver and spleen .a 1102 to 1551 456 to 1       456/457
(99 %)
11 diff
(97.6 %id)
AI149650   .a 1106 to 1558 458 to 6       453/458
(98 %)
0 diff
(100 %id)
AA972550 pooled .a 1108 to 1556 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
AI083548 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1108 to 1549 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
AI431306 aorta .a 1148 to 1556 455 to 47   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 409/409
(100 %)
0 diff
(100 %id)
AA151488 uterus .a 1149 to 1558 422 to 3       420/425
(98 %)
0 diff
(100 %id)
AI368910 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1150 to 1555 407 to 2       406/407
(99 %)
0 diff
(100 %id)
BQ373310 prostate_tumor .a 1156 to 1498 343 to 2       342/343
(99 %)
0 diff
(100 %id)
BX281381 normal prostatic epithelial cells, Prostate .a 1156 to 1558 424 to 22     Submitted on the opposite strand 403/424
(95 %)
0 diff
(100 %id)
AA572959 liposarcoma .a 1160 to 1630 1 to 470   tiling clone,   470/470
(100 %)
8 diff
(98.3 %id)
AI269063 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1168 to 1558 397 to 7       391/397
(98 %)
0 diff
(100 %id)
AI474166 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1194 to 1556 368 to 1       368/368
(100 %)
4 diff
(99.0 %id)
AA464625 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1236 to 1560 337 to 13   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 325/325
(100 %)
0 diff
(100 %id)
AA447713.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1237 to 1553 317 to 1     Submitted on the opposite strand, also hits gene godawbu 317/317
(100 %)
0 diff
(100 %id)
AA594611 colon, colon tumor RER+ .a 1238 to 1555 318 to 1       318/318
(100 %)
1 diff
(99.7 %id)
AI431308 aorta .a 1306 to 1556 300 to 50   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 251/251
(100 %)
1 diff
(99.7 %id)
AA029299 uterus .a 1310 to 1560 253 to 1   fully sequenced,   253/253
(100 %)
0 diff
(100 %id)
AW589521 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1361 to 1551 221 to 31   AAA   191/204
(93 %)
0 diff
(100 %id)
DA376667 thalamus .b-u 1 to 549 2 to 550 R57G tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
BC025707 Pancreas, Spleen, adult pooled .c 1 to 1709 1 to 1709 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 1709/1709
(100 %)
3 diff
(99.9 %id)
TI_1948153884   .c 394 to 797 118 to 521 exact     404/645
(62 %)
14 diff
(97.9 %id)
CV029493 mixed .c 401 to 797 1 to 397 exact     397/562
(70 %)
4 diff
(99.3 %id)
AI619439 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 1403 to 1715 313 to 1       313/313
(100 %)
0 diff
(100 %id)
DA988397 synovial membrane tissue from rheumatioidarthritis .d 246 to 647 164 to 565 L15P A17W Y19P L20K L21A ... tiling clone, capped Suspected internal deletion 564/564
(100 %)
3 diff
(99.5 %id)
AI341809 pooled germ cell tumors Gene KCNMB1, variant not shown         Suspected internal deletion, this clone was ignored    
AI826349 normal prostate, Prostate Gene KCNMB1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI