To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene KCNMA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
365 supporting clones for gene KCNMA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001161352.1   .a 1 to 6276 1 to 6276 exact RefSeq, AAA   6276/6276
(100 %)
0 diff
(100 %id)
AB113382   .a 236 to 3986 1 to 3751   tiling clone,   3751/3751
(100 %)
0 diff
(100 %id)
BF111069 carcinoid, lung .a 2209 to 2716 1 to 508     Submitted on the opposite strand 508/508
(100 %)
1 diff
(99.9 %id)
BE219872 carcinoid, lung .a 2211 to 2664 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
DA237392 brain .a 2330 to 2864 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
NM_001161353.1   .b 1 to 6225 1 to 6225 exact RefSeq, AAA   6225/6225
(100 %)
0 diff
(100 %id)
AB113575   .b 250 to 3837 1 to 3588   tiling clone,   3588/3588
(100 %)
0 diff
(100 %id)
TI_2194695646   .b 1178 to 2276 1 to 1090       1092/1295
(84 %)
16 diff
(98.8 %id)
AW052067 Kidney .b 1555 to 2269 745 to 32       716/745
(96 %)
11 diff
(98.6 %id)
BI085792 astrocytoma grade IV, cell line, brain .b 1564 to 2191 631 to 1       631/631
(100 %)
7 diff
(98.9 %id)
BM542825 leiomyosarcoma, uterus .b 1599 to 2485 46 to 942       897/1168
(76 %)
29 diff
(97.6 %id)
BG200351   .b 1701 to 2251 566 to 15     Submitted on the opposite strand 552/566
(97 %)
3 diff
(99.5 %id)
BG216184   .b 1701 to 2252 562 to 11     Submitted on the opposite strand 552/562
(98 %)
2 diff
(99.7 %id)
BM910118 astrocytoma grade IV, cell line, brain .b 1702 to 2238 591 to 52   AAA Submitted on the opposite strand 540/1128
(47 %)
10 diff
(99.2 %id)
AI095675 uterus .b 1732 to 2238 507 to 1       505/507
(99 %)
3 diff
(99.5 %id)
AI670742 Kidney .b 1735 to 2238 504 to 1       504/504
(100 %)
7 diff
(98.7 %id)
AI129381 uterus .b 1738 to 2245 509 to 2       508/509
(99 %)
0 diff
(100 %id)
AI147610 uterus .b 1747 to 2239 493 to 1       493/493
(100 %)
0 diff
(100 %id)
AI276627 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1750 to 2242 493 to 1       493/493
(100 %)
5 diff
(99.0 %id)
AI373399 uterus .b 1770 to 2238 468 to 1       468/479
(97 %)
3 diff
(99.4 %id)
AI335943 uterus .b 1786 to 2238 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AA194929 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1811 to 2226 1 to 415   fully sequenced,   415/415
(100 %)
6 diff
(98.6 %id)
AI091147 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1822 to 2238 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AI342342 uterus .b 1844 to 2238 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
AI080449 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1846 to 2198 355 to 1       358/358
(100 %)
14 diff
(96.1 %id)
U48337 Pancreas, pancreatic islets .b 1895 to 2238 348 to 2       345/349
(98 %)
4 diff
(98.9 %id)
AW080780 esophagus, squamous cell carcinoma .b 1918 to 2238 325 to 1       325/331
(98 %)
9 diff
(97.3 %id)
BG190639   .b 2035 to 2202 1 to 168       168/177
(94 %)
10 diff
(94.4 %id)
BG184292   .b 2060 to 2250 203 to 13     Submitted on the opposite strand 191/203
(94 %)
7 diff
(96.6 %id)
AA194930 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2075 to 2238 165 to 2   fully sequenced,   164/165
(99 %)
0 diff
(100 %id)
BG213376   .b 2084 to 2257 215 to 42     Submitted on the opposite strand 174/216
(80 %)
3 diff
(98.7 %id)
AA070331   .b 3001 to 3331 1 to 350       350/405
(86 %)
15 diff
(96.3 %id)
BI084209 epidermoid carcinoma, cell line, salivary gland .b 3024 to 3543 1 to 520   fully sequenced,   520/520
(100 %)
2 diff
(99.7 %id)
TI_2194695695   .b 3308 to 4479 8 to 1176   tiling clone,   1169/1266
(92 %)
34 diff
(97.4 %id)
BI084703 epidermoid carcinoma, cell line, salivary gland .b 3513 to 3985 479 to 6   fully sequenced,   474/479
(98 %)
0 diff
(100 %id)
DA651824   .b 3650 to 4197 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
BE715769 head_neck .b 3856 to 4260 6 to 408       403/408
(98 %)
6 diff
(98.6 %id)
TI_2194695644   .b 3859 to 5080 5 to 1216   tiling clone,   1212/1321
(91 %)
6 diff
(99.6 %id)
TI_154107910   .b 3859 to 4754 949 to 81   AAA   869/958
(90 %)
18 diff
(98.2 %id)
BE772452 prostate_tumor .b 3938 to 4359 422 to 1       422/422
(100 %)
0 diff
(100 %id)
BG222221 moderate to poorly differentiated invasivecarcinoma, tongue .b 3952 to 4287 370 to 34       337/377
(89 %)
0 diff
(100 %id)
CF597064 ovary .b 4067 to 4712 1 to 650       650/787
(82 %)
11 diff
(98.7 %id)
CA447316 Chondrosarcoma, Left Pelvis .b 4073 to 4754 698 to 19   AAA   680/685
(99 %)
1 diff
(99.9 %id)
DA133314 alzheimer cortex .b 4146 to 4618 76 to 549   capped   474/548
(86 %)
6 diff
(99.0 %id)
DA385784 thalamus .b 4187 to 4742 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB015065 esophageal, tumor tissue .b 4224 to 4685 2 to 471   capped   470/478
(98 %)
18 diff
(96.3 %id)
AK024857 colon .b 4280 to 6225 1 to 1947   tiling clone, available from FLJ, AAA   1947/1947
(100 %)
3 diff
(99.9 %id)
BQ217850 epithelioid carcinoma, Pancreas .b 4318 to 5062 1 to 749       749/926
(80 %)
18 diff
(98.1 %id)
TI_2194695645   .b 4364 to 5599 1 to 1218   tiling clone,   1218/1295
(94 %)
28 diff
(97.9 %id)
R11947 whole brain .b 4406 to 4807 1 to 406       406/406
(100 %)
8 diff
(98.1 %id)
AA070026   .b 5841 to 6224 388 to 2       387/388
(99 %)
0 diff
(100 %id)
R37036 whole brain .b 5873 to 6224 371 to 9       363/383
(94 %)
0 diff
(100 %id)
BC144496 Brain, cerebellum, PCR rescued clones .c 1 to 5558 1 to 5567 E699I D700Y E701F Q702E P703D ... tiling clone,   5567/5567
(100 %)
6 diff
(99.9 %id)
TI_2194695693   .c 2616 to 3743 5 to 1121   tiling clone,   1117/1253
(89 %)
17 diff
(98.7 %id)
DA338319 hippocampus .c 2628 to 3219 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
AI002717 schizophrenic brain S-11 frontal lobe .c 2667 to 2988 322 to 1       322/322
(100 %)
8 diff
(97.6 %id)
AY445624 brain .c 2866 to 3340 1 to 475       475/475
(100 %)
2 diff
(99.6 %id)
TI_2194694839   .c 4459 to 5559 1179 to 95   tiling clone, Submitted on the opposite strand 1085/1261
(86 %)
0 diff
(100 %id)
DA141986 alzheimer cortex .c 4483 to 5039 2 to 559   tiling clone, capped   558/558
(100 %)
2 diff
(99.7 %id)
T66770 whole brain .c 4502 to 4954 1 to 464   tiling clone,   464/469
(98 %)
14 diff
(97.1 %id)
TI_2194699407   .c 4507 to 5559 1128 to 91     Submitted on the opposite strand 1038/1270
(81 %)
0 diff
(100 %id)
TI_2194695642   .c 4674 to 5558 1 to 884       884/1310
(67 %)
5 diff
(99.7 %id)
AA036968 uterus .c 4682 to 5135 1 to 456       456/465
(98 %)
6 diff
(98.8 %id)
AA125765 uterus .c 4682 to 5044 1 to 365       365/371
(98 %)
4 diff
(99.0 %id)
AW068320 Bone, Hip .c 4700 to 5100 1 to 401       401/401
(100 %)
5 diff
(98.8 %id)
TI_2194695238   .c 4730 to 5559 1109 to 289       821/1258
(65 %)
0 diff
(100 %id)
TI_2194695212   .c 4748 to 5559 1095 to 287       809/1251
(64 %)
0 diff
(100 %id)
CF140710 CNCAP(3)T-225 cell line, Prostate .c 4752 to 5089 1 to 337       337/337
(100 %)
4 diff
(98.9 %id)
TI_154171291   .c 4760 to 5508 80 to 840       761/979
(77 %)
38 diff
(96.2 %id)
AW374394 colon .c 4788 to 5168 1 to 382       382/382
(100 %)
5 diff
(98.7 %id)
AW374415 colon .c 4788 to 5195 1 to 409       409/409
(100 %)
5 diff
(98.8 %id)
BU191674 epidermoid carcinoma, cell line, salivary gland .c 4845 to 5588 1 to 750       750/945
(79 %)
14 diff
(98.6 %id)
CB161282 Liver .c 4854 to 5418 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
BG924244 cartilage .c 4971 to 5406 82 to 516       435/448
(97 %)
11 diff
(97.6 %id)
TI_57220492   .c 4987 to 5589 31 to 634   AAA   604/1022
(59 %)
27 diff
(97.4 %id)
BI757614 brain .c 4993 to 5589 1 to 598       598/996
(60 %)
23 diff
(97.7 %id)
N48388.
matches multiple genes
melanocyte .c 5023 to 5387 1 to 366     also hits gene PTPRS 366/366
(100 %)
4 diff
(99.0 %id)
TI_2194695643   .c 5059 to 5559 13 to 512       500/1274
(39 %)
2 diff
(99.9 %id)
TI_154047720   .c 5130 to 6079 1041 to 98   AAA   944/1058
(89 %)
30 diff
(97.2 %id)
AA961021 carcinoid, lung .c 5174 to 5595 1 to 422     Submitted on the opposite strand 422/422
(100 %)
1 diff
(99.8 %id)
TI_154106407   .c 5208 to 6079 932 to 72   AAA   861/942
(91 %)
25 diff
(97.4 %id)
TI_154060512   .c 5239 to 6086 893 to 61   AAA   833/976
(85 %)
53 diff
(94.6 %id)
CN395683 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 5246 to 5522 1 to 277       277/277
(100 %)
1 diff
(99.7 %id)
AA137116 uterus .c 5338 to 5734 1 to 396   fully sequenced,   396/396
(100 %)
2 diff
(99.5 %id)
AA251861 germinal center B cell .c 5344 to 5529 1 to 186       186/186
(100 %)
0 diff
(100 %id)
BQ574058 Chondrosarcoma Grade II, Left Pelvis .c 5356 to 6086 749 to 19   AAA   731/731
(100 %)
1 diff
(99.9 %id)
CK820041 Islets of Langerhans, Pancreas .c 5411 to 6018 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
AA128566 uterus .c 5420 to 5725 1 to 306       306/306
(100 %)
1 diff
(99.7 %id)
AI335700 uterus .c 5426 to 5683 265 to 8       258/265
(97 %)
0 diff
(100 %id)
BM354069 Islets of Langerhans, Pancreas .c 5427 to 5532 1 to 111       111/143
(77 %)
6 diff
(95.9 %id)
CA419616 Bone, Human Chondrosarcoma Cell Line .c 5431 to 6086 674 to 19   AAA   656/656
(100 %)
1 diff
(99.9 %id)
BU634190 cell lines, Chondrosarcoma .c 5436 to 6079 662 to 19   AAA   644/644
(100 %)
1 diff
(99.9 %id)
CD366540 Alveolar Macrophage, lung .c 5436 to 6086 669 to 19   tiling clone, AAA   651/651
(100 %)
2 diff
(99.7 %id)
CA446794 Chondrosarcoma, Left Pubic Bone .c 5446 to 6079 650 to 17   AAA   634/634
(100 %)
2 diff
(99.7 %id)
CK820040 Islets of Langerhans, Pancreas .c 5480 to 6084 605 to 1       605/605
(100 %)
1 diff
(99.9 %id)
BM997062 Chondrosarcoma, Left Pubic Bone .c 5530 to 6079 566 to 17   AAA   550/550
(100 %)
0 diff
(100 %id)
CA412892 Chondrosarcoma Grade II, Left Pelvis .c 5534 to 6079 564 to 19   AAA   546/546
(100 %)
1 diff
(99.9 %id)
AI819282 2 pooled tumors (clear cell type), Kidney .c 5535 to 6085 555 to 5       551/593
(92 %)
0 diff
(100 %id)
AW264020 brain, three pooled meningiomas .c 5537 to 6086 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
BQ006586 Chondrosarcoma, Left Pelvis .c 5537 to 6086 568 to 19   AAA   550/550
(100 %)
1 diff
(99.9 %id)
AW444947   .c 5544 to 6079 551 to 16   AAA   536/536
(100 %)
0 diff
(100 %id)
BE645505 Prostate .c 5555 to 6087 540 to 9       532/540
(98 %)
0 diff
(100 %id)
AW612296 Kidney .c 5567 to 6086 530 to 11   AAA   520/520
(100 %)
2 diff
(99.7 %id)
BP387884 pancreatic islet .c 5572 to 6066 1 to 495     Submitted on the opposite strand 495/495
(100 %)
2 diff
(99.6 %id)
AI394487 brain, glioblastoma (pooled) .c 5573 to 6086 514 to 1       514/514
(100 %)
2 diff
(99.7 %id)
AI554265 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 5590 to 6080 492 to 1       492/492
(100 %)
1 diff
(99.8 %id)
BM273121 Islets of Langerhans, Pancreas .c 5599 to 6084 486 to 1       486/486
(100 %)
1 diff
(99.8 %id)
AW452826   .c 5625 to 6086 480 to 19   AAA   462/462
(100 %)
0 diff
(100 %id)
AI659484 Prostate .c 5638 to 6086 449 to 1       449/449
(100 %)
1 diff
(99.8 %id)
BE677380 dorsal root ganglia .c 5648 to 6085 440 to 3       438/440
(99 %)
0 diff
(100 %id)
AI571051 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 5651 to 6079 429 to 1       429/431
(99 %)
1 diff
(99.8 %id)
AW193554 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5683 to 6077 420 to 26   AAA   395/397
(99 %)
0 diff
(100 %id)
H88977 cochlea, ear .c 5695 to 6061 1 to 381     Submitted on the opposite strand 381/382
(99 %)
16 diff
(95.9 %id)
N38753 melanocyte .c 5702 to 6082 386 to 6       381/394
(96 %)
0 diff
(100 %id)
AI373096 uterus .c 5702 to 6086 400 to 16   AAA   385/385
(100 %)
0 diff
(100 %id)
AW068055 Bone, Hip .c 5702 to 6061 367 to 9       359/368
(97 %)
0 diff
(100 %id)
AA137034 uterus .c 5704 to 6087 384 to 1   tiling clone, fully sequenced,   384/384
(100 %)
0 diff
(100 %id)
AA131641 uterus .c 5705 to 6079 386 to 11   AAA   376/376
(100 %)
1 diff
(99.8 %id)
AA946843 2 pooled tumors (clear cell type), Kidney .c 5708 to 6082 378 to 4       375/378
(99 %)
0 diff
(100 %id)
AA251862 germinal center B cell .c 5714 to 6082 371 to 3       369/371
(99 %)
0 diff
(100 %id)
H89070 cochlea, ear .c 5716 to 6067 356 to 1     Submitted on the opposite strand 356/356
(100 %)
8 diff
(97.8 %id)
AA127043 uterus .c 5726 to 6086 365 to 1       365/365
(100 %)
4 diff
(99.0 %id)
AA707844 pineal gland .c 5727 to 6080 354 to 1       354/354
(100 %)
0 diff
(100 %id)
T66769 whole brain .c 5729 to 6085 359 to 3       357/359
(99 %)
0 diff
(100 %id)
AA128269 uterus .c 5734 to 6079 349 to 2       348/353
(98 %)
0 diff
(100 %id)
AI192199 uterus .c 5735 to 6079 345 to 1       345/345
(100 %)
0 diff
(100 %id)
AA031880 uterus .c 5755 to 6063 1 to 309   fully sequenced,   309/309
(100 %)
1 diff
(99.7 %id)
AI375773 uterus .c 5760 to 6086 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AI147609 uterus .c 5761 to 6071 319 to 10       310/319
(97 %)
0 diff
(100 %id)
AW262537 brain, three pooled meningiomas .c 5766 to 6085 333 to 14   AAA   320/320
(100 %)
0 diff
(100 %id)
CR748175 uterus .c 5791 to 6086 1 to 296   AAA   296/296
(100 %)
0 diff
(100 %id)
AI799212 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 5818 to 6085 270 to 3       268/270
(99 %)
0 diff
(100 %id)
EC516178 Prostate .c 5830 to 5937 1 to 108       108/108
(100 %)
2 diff
(98.2 %id)
AW450921   .c 5832 to 6079 265 to 18   AAA   248/258
(96 %)
0 diff
(100 %id)
EC484405 Prostate .c 5859 to 5956 15 to 112       98/112
(87 %)
6 diff
(94.7 %id)
AA031781 uterus .c 5911 to 6059 149 to 1   fully sequenced,   149/149
(100 %)
0 diff
(100 %id)
AA565714 adrenal adenoma, adrenal gland .c 5919 to 6085 169 to 1       169/169
(100 %)
2 diff
(98.9 %id)
EC552935 Prostate .c 5954 to 6073 1 to 119       119/119
(100 %)
1 diff
(99.2 %id)
NM_001014797.2   .d 1 to 11994 1 to 11994 exact RefSeq,   11994/11994
(100 %)
0 diff
(100 %id)
BF669177 brain, primitive neuroectoderm .d 9 to 550 1 to 538   tiling clone, available from MGC,   538/870
(61 %)
9 diff
(99.0 %id)
DA380465 thalamus .d 13 to 551 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
CN284773 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 33 to 208 1 to 177       177/177
(100 %)
7 diff
(96.1 %id)
BE904758 epithelioid carcinoma, Pancreas .d 51 to 370 1 to 323   available from MGC,   323/439
(73 %)
4 diff
(99.1 %id)
DA020747   .d 81 to 556 2 to 479   capped   478/552
(86 %)
3 diff
(99.5 %id)
DA926850 small intestine .d 84 to 556 2 to 475   capped   474/528
(89 %)
2 diff
(99.7 %id)
DA787023 brain .d 93 to 454 2 to 363   capped   362/362
(100 %)
1 diff
(99.8 %id)
TI_2194694856   .d 98 to 725 109 to 735     Submitted on the opposite strand 627/1265
(49 %)
12 diff
(99.1 %id)
BP315199 mammary gland .d 129 to 711 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BM128676 Islets of Langerhans, Pancreas .d 135 to 699 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DB273518 uterus .d 179 to 639 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
DA492113 brain .d 184 to 748 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA551803   .d 242 to 725 2 to 485   capped   484/498
(97 %)
7 diff
(98.6 %id)
U09384 hippocampus .d 248 to 2198 68 to 2016   tiling clone,   1949/2016
(96 %)
6 diff
(99.8 %id)
DA788368 brain .d 257 to 725 2 to 469   capped   468/575
(81 %)
9 diff
(98.5 %id)
DR005965 Prostate .d 276 to 725 1 to 449       449/512
(87 %)
7 diff
(98.7 %id)
F34352 pectoral muscle (after mastectomy) .d 326 to 518 1 to 194       194/194
(100 %)
4 diff
(98.0 %id)
CD614364   .d 353 to 786 139 to 574       436/516
(84 %)
13 diff
(97.5 %id)
BF940224 brain, glioblastoma (pooled) .d 358 to 560 205 to 3       203/205
(99 %)
0 diff
(100 %id)
CD614367   .d 363 to 987 1 to 624       624/772
(80 %)
4 diff
(99.5 %id)
DA048021   .d 378 to 983 2 to 610   capped   609/609
(100 %)
3 diff
(99.6 %id)
CD614370   .d 554 to 1330 783 to 5       779/828
(94 %)
4 diff
(99.6 %id)
CD614366   .d 562 to 1335 776 to 1       776/776
(100 %)
7 diff
(99.1 %id)
AB209488 brain .d 595 to 11994 1 to 11401   tiling clone,   11401/11401
(100 %)
3 diff
(100.0 %id)
CD614368   .d 597 to 1330 737 to 5       733/737
(99 %)
1 diff
(99.9 %id)
CD614372   .d 717 to 1335 617 to 1       617/906
(68 %)
3 diff
(99.7 %id)
CD614374   .d 717 to 1329 612 to 1       612/861
(71 %)
2 diff
(99.8 %id)
BP194231 brain .d 756 to 1334 1 to 581       581/581
(100 %)
10 diff
(98.3 %id)
TI_2194695694   .d 772 to 1872 33 to 1121       1089/1253
(86 %)
23 diff
(98.2 %id)
BP332921 salivary gland .d 816 to 1385 1 to 570       570/570
(100 %)
3 diff
(99.5 %id)
DA220861 brain .d 968 to 1506 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
CD614363   .d 1021 to 1745 727 to 5       723/727
(99 %)
12 diff
(98.4 %id)
CD614361   .d 1078 to 1740 672 to 13       660/672
(98 %)
3 diff
(99.6 %id)
CN393842 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1154 to 1678 1 to 530       530/531
(99 %)
8 diff
(98.5 %id)
DA995010 synovial membrane tissue from rheumatioidarthritis .d 1169 to 1715 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
AA644503 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1332 to 1707 17 to 393       377/395
(95 %)
10 diff
(97.5 %id)
DB290676 uterus .d 1501 to 2089 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
AI633673 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1512 to 2236 710 to 3       641/720
(89 %)
18 diff
(97.5 %id)
BG188501   .d 1701 to 1794 1 to 94       94/94
(100 %)
0 diff
(100 %id)
BG191623   .d 1701 to 1891 1 to 191       191/196
(97 %)
3 diff
(98.5 %id)
DB281642 uterus .d 2122 to 2690 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
R15380 whole brain .d 2380 to 2782 1 to 411       411/414
(99 %)
9 diff
(97.9 %id)
AW384308 head_neck .d 2405 to 2598 56 to 250       195/250
(78 %)
8 diff
(96.8 %id)
CD516198 White Matter .d 2443 to 2822 1 to 380       380/930
(40 %)
1 diff
(99.9 %id)
CN393840 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2497 to 3205 1 to 708       708/708
(100 %)
3 diff
(99.6 %id)
BG204095   .d 2500 to 2634 1 to 135       135/135
(100 %)
0 diff
(100 %id)
CN393839 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2574 to 3247 1 to 674       674/674
(100 %)
1 diff
(99.9 %id)
BE765223 nervous_tumor .d 2598 to 3065 468 to 1       468/468
(100 %)
0 diff
(100 %id)
CN393841 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2634 to 3368 12 to 746       735/746
(98 %)
6 diff
(99.2 %id)
CD614376   .d 2822 to 3156 8 to 342       335/342
(97 %)
7 diff
(98.0 %id)
CN393843 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 2863 to 3358 1 to 496       496/503
(98 %)
1 diff
(99.9 %id)
BE937100 stomach_normal .d 2883 to 3212 14 to 342       329/342
(96 %)
7 diff
(98.0 %id)
BE763411 nervous_tumor .d 3119 to 3273 156 to 4       153/156
(98 %)
0 diff
(100 %id)
DA657386   .d 3128 to 3610 2 to 484   capped   483/483
(100 %)
0 diff
(100 %id)
BF856890 prostate_tumor .d 3162 to 3593 19 to 449       431/449
(95 %)
7 diff
(98.5 %id)
BI046103 prostate_normal .d 3165 to 3612 17 to 466       448/468
(95 %)
17 diff
(96.4 %id)
BI045848 prostate_normal .d 3166 to 3597 1 to 439       439/439
(100 %)
22 diff
(95.0 %id)
BF858068 prostate_tumor .d 3167 to 3610 446 to 3     Submitted on the opposite strand 444/446
(99 %)
0 diff
(100 %id)
BI045511 prostate_normal .d 3167 to 3597 1 to 430       430/430
(100 %)
3 diff
(99.4 %id)
BI045794 prostate_normal .d 3167 to 3597 1 to 432       432/432
(100 %)
3 diff
(99.4 %id)
BI045865 prostate_normal .d 3167 to 3464 1 to 296       296/345
(85 %)
3 diff
(99.2 %id)
BI046712 prostate_normal .d 3167 to 3609 1 to 445       445/457
(97 %)
12 diff
(97.4 %id)
BI046736 prostate_normal .d 3167 to 3597 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
BI046741 prostate_normal .d 3167 to 3597 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
BI046143 prostate_normal .d 3168 to 3603 18 to 455       438/469
(93 %)
16 diff
(96.6 %id)
AV724950 hypothalamus .d 3204 to 3703 1 to 491       491/491
(100 %)
8 diff
(98.4 %id)
BF438426 pooled germ cell tumors .d 3475 to 3721 247 to 1       247/262
(94 %)
7 diff
(97.4 %id)
BG197661   .d 3707 to 4212 15 to 523       509/903
(56 %)
10 diff
(98.9 %id)
BG207006   .d 3707 to 4215 52 to 563       512/880
(58 %)
15 diff
(98.3 %id)
BG194610   .d 3708 to 3986 1 to 279       279/280
(99 %)
16 diff
(94.3 %id)
BG215991   .d 3713 to 3998 1 to 286   AAA   286/286
(100 %)
4 diff
(98.7 %id)
BM128429 Islets of Langerhans, Pancreas .d 3910 to 4460 551 to 1       551/551
(100 %)
0 diff
(100 %id)
BX099866 whole brain .d 3972 to 4459 502 to 15   AAA   488/488
(100 %)
0 diff
(100 %id)
AA906999 carcinoid, lung .d 4082 to 4413 332 to 1       332/332
(100 %)
0 diff
(100 %id)
R42121 whole brain .d 4134 to 4459 354 to 15   AAA   340/344
(98 %)
16 diff
(95.4 %id)
BE836442 prostate_normal .d 4324 to 4709 397 to 12       386/403
(95 %)
0 diff
(100 %id)
BE836448 prostate_normal .d 4324 to 4680 362 to 5       358/368
(97 %)
0 diff
(100 %id)
DA223492 brain .d 4931 to 5499 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA302477 hippocampus .d 4990 to 5587 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA221630 brain .d 5001 to 5536 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA411448 thalamus .d 5157 to 5716 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA403938 thalamus .d 5205 to 5753 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA329065 hippocampus .d 6160 to 6808 2 to 653   capped   652/652
(100 %)
5 diff
(99.3 %id)
AL713038 human skeletal muscle .d 6606 to 6889 9 to 292       284/292
(97 %)
6 diff
(98.0 %id)
BX471724   .d 6904 to 7408 1 to 504       504/504
(100 %)
4 diff
(99.3 %id)
R13307 whole brain .d 7058 to 7554 1 to 518       518/518
(100 %)
22 diff
(95.8 %id)
BF361949 nervous_normal .d 7163 to 7397 239 to 6       234/239
(97 %)
0 diff
(100 %id)
BF361930 nervous_normal .d 7268 to 7397 1 to 130       130/135
(96 %)
3 diff
(97.8 %id)
BF361942 nervous_normal .d 7270 to 7397 1 to 127       127/132
(96 %)
2 diff
(98.5 %id)
DA109089 cerebellum .d 8076 to 8658 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB308093 hippocampus .d 8146 to 8696 551 to 1   tiling clone,   551/551
(100 %)
0 diff
(100 %id)
DA407548 thalamus .d 8719 to 9220 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA780745 brain .d 8723 to 9284 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA793555 brain .d 8920 to 9459 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AK055362 brain .d 9031 to 11989 1 to 2959   tiling clone, available from FLJ,   2959/2959
(100 %)
2 diff
(100.0 %id)
DA513727 brain .d 9032 to 9595 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA174573 amygdala .d 9438 to 10009 2 to 575   capped   574/578
(99 %)
5 diff
(99.2 %id)
EB387831 eye, optic nerve .d 9876 to 10676 8 to 808       801/808
(99 %)
6 diff
(99.3 %id)
DN992118 brain, whole brain .d 9894 to 10494 9 to 610       602/610
(98 %)
6 diff
(99.1 %id)
BE797948 lung, small cell carcinoma .d 10023 to 10790 20 to 775       756/1009
(74 %)
28 diff
(97.3 %id)
BE791163 lung, small cell carcinoma .d 10042 to 10804 1 to 791       791/820
(96 %)
78 diff
(90.5 %id)
DA143108 alzheimer cortex .d 10084 to 10648 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB299737 cerebellum .d 11138 to 11684 547 to 1       547/547
(100 %)
0 diff
(100 %id)
DB316634 brain .d 11445 to 11989 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
DB309539 hippocampus .d 11456 to 11989 535 to 1       535/537
(99 %)
8 diff
(98.6 %id)
NM_002247.3   .e 1 to 6102 1 to 6102 exact RefSeq, AAA   6102/6102
(100 %)
0 diff
(100 %id)
BC137115 Brain, cerebellum, PCR rescued clones .e 98 to 5574 1 to 5477 exact tiling clone,   5477/5477
(100 %)
2 diff
(100.0 %id)
BC137137 Testicle, PCR rescued clones .e 98 to 5574 1 to 5477 exact     5477/5477
(100 %)
2 diff
(100.0 %id)
U13913 substantia nigra brain tissue .e 101 to 4245 1 to 4146 A38V tiling clone,   4146/4149
(99 %)
8 diff
(99.9 %id)
U23767 Aorta/umbilicus smooth muscle .e 178 to 3714 1 to 3537 exact     3537/3537
(100 %)
3 diff
(100.0 %id)
U11717   .e 226 to 3993 1 to 3769       3769/3769
(100 %)
5 diff
(99.9 %id)
AY040849 non-pregnant myometrium .e 236 to 3812 1 to 3577       3577/3577
(100 %)
0 diff
(100 %id)
AF025999 lens epithelium .e 250 to 3714 1 to 3465       3465/3465
(100 %)
0 diff
(100 %id)
U11058 myometrium .e 287 to 6100 1 to 5814   tiling clone, AAA   5814/5814
(100 %)
2 diff
(100.0 %id)
AF118141 pulmonary artery .e 373 to 3736 1 to 3364       3364/3364
(100 %)
3 diff
(100.0 %id)
TI_2194695640   .e 1730 to 2906 1 to 1183       1183/1318
(89 %)
21 diff
(98.5 %id)
BU147434 dorsal root ganglia .e 1964 to 2617 1 to 655       655/890
(73 %)
12 diff
(98.7 %id)
AB524033   .f 1 to 3386 2 to 3387 exact tiling clone,   3387/3387
(100 %)
0 diff
(100 %id)
DC399256 testis .g -11 to 418 1 to 430       430/552
(77 %)
1 diff
(99.9 %id)
DC397376 testis .g 1 to 547 2 to 548   tiling clone,   548/548
(100 %)
1 diff
(99.9 %id)
DB096973 testis .g 1 to 420 2 to 421   capped   420/572
(73 %)
1 diff
(99.9 %id)
AK310379 testis .g 419 to 3851 434 to 3866 exact tiling clone,   3866/3866
(100 %)
1 diff
(100.0 %id)
DC400606 testis .g 419 to 519 434 to 534       534/534
(100 %)
1 diff
(99.9 %id)
DA102061 cerebellum .g 2117 to 2676 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DN994748 brain, whole brain .g 3326 to 3851 1 to 526       526/526
(100 %)
5 diff
(99.1 %id)
U02632 muscle .h 1 to 3090 1 to 3090 exact tiling clone,   3090/3090
(100 %)
2 diff
(100.0 %id)
DA725778   .i 72 to 630 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DB068472 testis .i 419 to 528 436 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB071592 testis .i 419 to 536 434 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB078002 testis .i 419 to 558 434 to 573   capped   572/573
(99 %)
2 diff
(99.7 %id)
BX648925 human testis .i 628 to 3772 1 to 3145 exact tiling clone, available from DKFZ, AAA   3145/3146
(99 %)
3 diff
(100.0 %id)
AL705754 human skeletal muscle .i 679 to 1252 59 to 632       574/632
(90 %)
7 diff
(98.9 %id)
CB047111 2 pooled tumors (clear cell type), Kidney .j 1 to 513 9 to 521   tiling clone,   513/521
(98 %)
1 diff
(99.9 %id)
BG185868   .j 384 to 1155 1 to 770   tiling clone,   770/771
(99 %)
13 diff
(98.4 %id)
BG189025   .j 384 to 1183 1 to 797       797/798
(99 %)
25 diff
(96.9 %id)
BG198117   .j 384 to 1177 1 to 786   tiling clone,   786/795
(98 %)
18 diff
(97.8 %id)
BG220672   .j 606 to 1378 1 to 772   tiling clone, AAA   772/772
(100 %)
10 diff
(98.8 %id)
CB047110 2 pooled tumors (clear cell type), Kidney .j 680 to 1194 541 to 27   AAA   515/515
(100 %)
3 diff
(99.5 %id)
CR627384 seminom .k 1 to 1267 1 to 1267 M75V tiling clone, available from DKFZ, AAA   1267/1267
(100 %)
3 diff
(99.8 %id)
BM688852 eye, optic nerve .k 708 to 1263 8 to 563   fully sequenced, AAA   556/563
(98 %)
6 diff
(99.0 %id)
AI198535   .k 787 to 1269 484 to 2       483/484
(99 %)
0 diff
(100 %id)
AI298419 carcinoid, lung .k 819 to 1246 428 to 1       428/428
(100 %)
0 diff
(100 %id)
F31430 pectoral muscle (after mastectomy) .k 834 to 1106 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
AA936075 pooled germ cell tumors .k 854 to 1263 410 to 1       410/410
(100 %)
0 diff
(100 %id)
F35625 pectoral muscle (after mastectomy) .k 856 to 983 1 to 128       128/128
(100 %)
5 diff
(96.1 %id)
F22134 pectoral muscle (after mastectomy) .k 875 to 1211 1 to 336       336/347
(96 %)
3 diff
(99.2 %id)
AW090373 brain, tumor, 5 pooled (see description) .k 924 to 1264 341 to 1       341/341
(100 %)
0 diff
(100 %id)
AI216827 carcinoid, lung .k 994 to 1246 253 to 1       253/253
(100 %)
1 diff
(99.7 %id)
AA512886 normal prostate, Prostate .k 1033 to 1269 256 to 21   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 236/256
(92 %)
0 diff
(100 %id)
BU958250 mixed (pool of 40 RNAs) .k 1096 to 1269 1 to 174   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 174/238
(73 %)
2 diff
(99.2 %id)
BU727321 eye, optic nerve .k 1169 to 1263 113 to 19   fully sequenced, AAA   95/95
(100 %)
1 diff
(99.0 %id)
AL540275 brain, fetal brain .l-u 1 to 1014 1 to 1002   tiling clone,   1002/1003
(99 %)
44 diff
(95.7 %id)
DR007019 Spleen .l-u 822 to 1476 8 to 662   tiling clone,   655/662
(98 %)
6 diff
(99.1 %id)
AL540274 brain, fetal brain .l-u 1312 to 2383 1065 to 1   tiling clone,   1065/1066
(99 %)
33 diff
(97.0 %id)
AK128392 thymus .m 1 to 2803 2 to 2804 exact tiling clone, available from FLJ,   2804/2804
(100 %)
2 diff
(100.0 %id)
DB157956 thymus .m 1 to 573 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BG216619   .m 1982 to 2795 821 to 11     Submitted on the opposite strand 811/821
(98 %)
10 diff
(98.8 %id)
AW305218 brain, three pooled meningiomas .m 2188 to 2807 620 to 1   tiling clone,   620/620
(100 %)
8 diff
(98.8 %id)
BQ446412 Knee, Osteoarthritic Cartilage .m 2223 to 2803 594 to 16   AAA   579/579
(100 %)
3 diff
(99.5 %id)
DB054949 testis .n 1 to 562 2 to 563 exact tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
BC024965 Kidney, hypernephroma .o 1 to 866 1 to 866 exact tiling clone, available from MGC, AAA   866/866
(100 %)
0 diff
(100 %id)
BG166707 hypernephroma, cell line, Kidney .o 2 to 779 1 to 762 G10A S11A S12A G13A G14A ... available from MGC,   762/845
(90 %)
16 diff
(98.2 %id)
BC062659 Brain, primitive neuroectodermal .o 6 to 866 1 to 862 exact available from MGC, AAA   862/862
(100 %)
3 diff
(99.7 %id)
AA044163 uterus .o 75 to 307 1 to 234       234/267
(87 %)
8 diff
(97.1 %id)
EL736596 mixed .o 178 to 655 1 to 478       478/478
(100 %)
5 diff
(99.0 %id)
BM808830 amelanotic melanoma, cell line, skin .o 299 to 862 1 to 570   AAA   570/570
(100 %)
16 diff
(97.2 %id)
BE856326 brain, glioblastoma (pooled) .o 333 to 846 515 to 1       515/515
(100 %)
6 diff
(98.9 %id)
AI953949 brain, three pooled meningiomas .o 358 to 846 489 to 1       489/489
(100 %)
2 diff
(99.6 %id)
AA044244 uterus .o 385 to 866 496 to 16   AAA   481/481
(100 %)
8 diff
(98.4 %id)
AW193854 serous papillary carcinoma, high grade, 2pooled tumors, uterus .o 386 to 866 500 to 23   AAA   478/485
(98 %)
28 diff
(94.3 %id)
AI263560 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 391 to 866 493 to 16   AAA   478/478
(100 %)
11 diff
(97.7 %id)
BF001467 colon, colon tumor, RER+ .o 413 to 866 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI367843 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 415 to 866 467 to 16   AAA   452/452
(100 %)
8 diff
(98.3 %id)
AW003118 pooled germ cell tumors .o 421 to 859 450 to 12       439/450
(97 %)
0 diff
(100 %id)
CR739691 colon .o 428 to 870 6 to 448       443/448
(98 %)
6 diff
(98.7 %id)
F36294 pectoral muscle (after mastectomy) .o 438 to 629 1 to 192       192/192
(100 %)
1 diff
(99.5 %id)
AI833039 colon .o 465 to 866 402 to 1       402/402
(100 %)
49 diff
(87.9 %id)
DB037477 testis .p 1 to 579 2 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
BG195833   .p 375 to 1029 1 to 654   tiling clone,   654/656
(99 %)
2 diff
(99.7 %id)
BM966804 Islets of Langerhans, Pancreas .q 1 to 466 1 to 466   tiling clone, fully sequenced,   466/466
(100 %)
1 diff
(99.8 %id)
BC009695 Pancreas, epithelioid carcinoma .q 144 to 1033 1 to 890 exact tiling clone, available from MGC, AAA   890/890
(100 %)
0 diff
(100 %id)
BG108373 Bone, osteosarcoma, cell line .q 234 to 860 1 to 647 S12Q G13R G14R G15R G16R ...     647/647
(100 %)
26 diff
(96.0 %id)
TI_154103212   .q 433 to 1033 716 to 116   AAA   601/941
(63 %)
0 diff
(100 %id)
CK724888 Chondrosarcoma, Left Pubic Bone .q 446 to 1033 606 to 19   AAA   588/588
(100 %)
0 diff
(100 %id)
BM893581 Islets of Langerhans, Pancreas .q 465 to 1033 569 to 1   fully sequenced,   569/569
(100 %)
0 diff
(100 %id)
AK124355 uterus .r 1 to 2506 2 to 2507 exact tiling clone, available from FLJ,   2507/2507
(100 %)
2 diff
(100.0 %id)
DB267418 uterus .r 1 to 591 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DR005657 Prostate .r 279 to 688 1 to 409       409/618
(66 %)
6 diff
(99.1 %id)
AF349445   .r 387 to 518 1 to 132       132/132
(100 %)
0 diff
(100 %id)
CR741718 multiple sclerosis lesions .r 1678 to 1850 1 to 175       175/184
(95 %)
4 diff
(97.9 %id)
N54192 multiple sclerosis lesions .r 1729 to 2016 1 to 290       290/290
(100 %)
5 diff
(98.3 %id)
DB351864 uterus .r 1987 to 2506 520 to 1       520/521
(99 %)
0 diff
(100 %id)
N51068 multiple sclerosis lesions .r 2033 to 2507 477 to 1   tiling clone,   477/477
(100 %)
2 diff
(99.6 %id)
DA134110 alzheimer cortex .s-u 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
T10143   .s-u 387 to 713 13 to 339       327/339
(96 %)
6 diff
(98.3 %id)
AA349680 brain .s-u 390 to 711 1 to 322       322/322
(100 %)
3 diff
(99.1 %id)
T16837   .s-u 395 to 763 26 to 395   tiling clone,   370/404
(91 %)
6 diff
(98.6 %id)
H10820 whole brain .s-u 407 to 894 19 to 510 W29X V34X T35H R36S P37A ...     492/510
(96 %)
6 diff
(98.9 %id)
R20011 whole brain .s-u 435 to 745 1 to 315     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 315/319
(98 %)
10 diff
(96.9 %id)
H11158 whole brain .s-u 472 to 882 1 to 419       419/420
(99 %)
11 diff
(97.4 %id)
R11976 whole brain .s-u 473 to 906 1 to 446 A33Q V34F E52G S75F P76T ...     446/446
(100 %)
16 diff
(96.5 %id)
R16305 whole brain .s-u 473 to 819 1 to 352       352/368
(95 %)
14 diff
(96.2 %id)
N77156 multiple sclerosis lesions .s-u 540 to 837 1 to 307   tiling clone,   307/307
(100 %)
27 diff
(91.3 %id)
H06652 whole brain .s-u 621 to 1029 1 to 426   tiling clone, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 426/428
(99 %)
26 diff
(94.0 %id)
T32515 gallbladder .s-u 869 to 1132 1 to 264       264/264
(100 %)
0 diff
(100 %id)
AW956551   .s-u 870 to 1350 1 to 481   tiling clone,   481/481
(100 %)
0 diff
(100 %id)
Z44306 brain, total brain .s-u 943 to 1261 1 to 319       319/319
(100 %)
2 diff
(99.4 %id)
R15202 whole brain .s-u 981 to 1329 1 to 356       356/360
(98 %)
12 diff
(96.7 %id)
BF438066 carcinoid, lung .s-u 991 to 1498 1 to 507     Submitted on the opposite strand 507/507
(100 %)
2 diff
(99.7 %id)
H19099 brain .s-u 1002 to 1362 1 to 364       364/440
(82 %)
11 diff
(97.5 %id)
H46329 brain .s-u 1002 to 1325 1 to 326       326/422
(77 %)
8 diff
(98.2 %id)
R88637 brain .s-u 1030 to 1282 1 to 252       252/253
(99 %)
4 diff
(98.5 %id)
BF445125 carcinoid, lung .s-u 1049 to 1567 519 to 1   tiling clone,   519/519
(100 %)
0 diff
(100 %id)
AI697921 carcinoid, lung .s-u 1080 to 1563 483 to 1       483/483
(100 %)
3 diff
(99.4 %id)
BQ447662 Knee, Osteoarthritic Cartilage .s-u 1264 to 1869 621 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 603/603
(100 %)
4 diff
(99.4 %id)
AI832576 colon .s-u 1296 to 1869 576 to 1       576/576
(100 %)
8 diff
(98.7 %id)
AW450002   .s-u 1296 to 1564 284 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 269/269
(100 %)
1 diff
(99.7 %id)
BG060120 brain, glioblastoma without EGFR amplification .s-u 1363 to 1873 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
BX099249 whole brain .s-u 1386 to 1869 498 to 15   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 484/484
(100 %)
1 diff
(99.8 %id)
BE503307 pooled germ cell tumors .s-u 1401 to 1870 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
H09746 whole brain .s-u 1412 to 1876 476 to 3       474/476
(99 %)
0 diff
(100 %id)
N59345 multiple sclerosis lesions .s-u 1436 to 1869 434 to 1       434/434
(100 %)
2 diff
(99.6 %id)
BM931692 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .s-u 1437 to 1869 1 to 433   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 433/433
(100 %)
0 diff
(100 %id)
H18998 brain .s-u 1439 to 1869 440 to 1       440/441
(99 %)
18 diff
(96.0 %id)
BF941012 brain, oligodendroglioma .s-u 1439 to 1873 435 to 1   tiling clone,   435/437
(99 %)
2 diff
(99.6 %id)
H11071 whole brain .s-u 1443 to 1876 447 to 2       446/451
(98 %)
0 diff
(100 %id)
T03482   .s-u 1488 to 1869 386 to 1       386/387
(99 %)
7 diff
(98.2 %id)
R41647 whole brain .s-u 1521 to 1876 366 to 2       365/366
(99 %)
0 diff
(100 %id)
R40227 whole brain .s-u 1528 to 1840 360 to 41       320/362
(88 %)
0 diff
(100 %id)
R39818 whole brain .s-u 1565 to 1876 314 to 2       313/317
(98 %)
0 diff
(100 %id)
T10142   .s-u 1575 to 1872 299 to 1       299/299
(100 %)
2 diff
(99.4 %id)
H46261 brain .s-u 1577 to 1855 279 to 1       279/279
(100 %)
0 diff
(100 %id)
H06653 whole brain .s-u 1599 to 1869 292 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 275/410
(67 %)
5 diff
(98.8 %id)
Z40263 brain, total brain .s-u 1616 to 1869 254 to 1       254/254
(100 %)
0 diff
(100 %id)
BM675713 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .s-u 1638 to 1869 250 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 232/232
(100 %)
0 diff
(100 %id)
CB178412 Pancreas, Purified pancreatic islet .s-u 1639 to 1869 1 to 231   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 231/231
(100 %)
0 diff
(100 %id)
T16836   .s-u 1651 to 1869 219 to 1       219/219
(100 %)
0 diff
(100 %id)
R44827 whole brain .s-u 1659 to 1869 222 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 212/212
(100 %)
1 diff
(99.6 %id)
AA992220   .s-u 1673 to 1869 216 to 20   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 197/197
(100 %)
0 diff
(100 %id)
BQ017892 lung, Metastatic Chondrosarcoma .t 1 to 706 724 to 19 V15X tiling clone, AAA   706/706
(100 %)
0 diff
(100 %id)
BG197760   .u 1 to 637 1 to 637 exact tiling clone,   637/641
(99 %)
9 diff
(98.6 %id)
BG210762   .u 1 to 306 1 to 306 S72A     306/306
(100 %)
1 diff
(99.7 %id)
BG216185   .u 400 to 630 289 to 59   tiling clone, Submitted on the opposite strand 231/289
(79 %)
0 diff
(100 %id)
DA683778   .va 1 to 598 2 to 600   tiling clone, capped   599/599
(100 %)
1 diff
(99.9 %id)
BG191951   .va 431 to 1189 771 to 15 P32X W36C tiling clone, Submitted on the opposite strand 757/772
(98 %)
8 diff
(99.0 %id)
BG565962 Liver .vb-u 1 to 803 7 to 823 P19L tiling clone,   823/831
(99 %)
26 diff
(96.9 %id)
TI_151733586   .vc-u 1 to 786 868 to 87 exact tiling clone, AAA   782/954
(81 %)
8 diff
(99.2 %id)
BQ188847 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc-u 9 to 231 1 to 223   tiling clone, fully sequenced,   223/223
(100 %)
0 diff
(100 %id)
CK300220 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc-u 201 to 786 604 to 19 exact fully sequenced, AAA   586/586
(100 %)
0 diff
(100 %id)
BX090354   .vd 1 to 631 1 to 632 P69T tiling clone,   632/632
(100 %)
2 diff
(99.7 %id)
AA405034   .vd 1 to 147 1 to 147   fully sequenced,   147/147
(100 %)
1 diff
(99.4 %id)
AA412682   .vd 107 to 635 541 to 12 P69T tiling clone, fully sequenced, AAA   530/530
(100 %)
2 diff
(99.7 %id)
AA719180 pineal gland .ve-u 1 to 387 398 to 12 exact tiling clone, AAA   387/387
(100 %)
0 diff
(100 %id)
CV334175 nervous_tumor .vf-u 1 to 353 34 to 386 S26C tiling clone,   360/386
(93 %)
6 diff
(98.5 %id)
BX501235 Liver Gene KCNMA1, variant not shown         This clone was ignored    
BX501236 Liver Gene KCNMA1, variant not shown         This clone was ignored    
DA576613   Gene KCNMA1, variant not shown       capped This clone was ignored    
AK098326.
matches multiple genes
uterus Gene KCNMA1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
AK098326.
matches multiple genes
uterus Gene zoymawby, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
DB260437.
matches multiple genes
uterus Gene KCNMA1, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
DB260437.
matches multiple genes
uterus Gene zoymawby, variant not shown       capped Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
DB351610.
matches multiple genes
uterus Gene KCNMA1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
DB351610.
matches multiple genes
uterus Gene zoymawby, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene zoymawby    
DB281823 uterus Gene KCNMA1, variant not shown       capped This clone was ignored    
DB352541 uterus Gene KCNMA1, variant not shown         This clone was ignored    
AW833126.
matches multiple genes
testis Gene KCNMA1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene dawskey    
AW833126.
matches multiple genes
testis Gene dawskey, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene dawskey    
TI_2194695641   Gene KCNMA1, variant not shown         This clone was ignored    
DB309081 hippocampus Gene KCNMA1, variant not shown         This clone was ignored    
DA320632 hippocampus Gene KCNMA1, variant not shown       capped This clone was ignored    
R40334 whole brain Gene KCNMA1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o, .p, .q, .r, .s-u, .t, .u, .va, .vb-u, .vc-u, .vd, .ve-u, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI