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Gene KCNF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
38 supporting clones for gene KCNF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI757855 brain -u 1 to 272 1 to 271   tiling clone,   271/272
(99 %)
3 diff
(98.9 %id)
BI552865 brain, hippocampus -u 33 to 653 1 to 647       647/670
(96 %)
14 diff
(98.0 %id)
BG708997 brain, hypothalamus -u 35 to 808 1 to 771       771/771
(100 %)
10 diff
(98.8 %id)
BC026110 Brain, hypothalamus -u 39 to 2328 1 to 2290 exact tiling clone, available from MGC, AAA   2290/2290
(100 %)
3 diff
(99.9 %id)
NM_002236.4   -u 41 to 2328 1 to 2288 exact RefSeq, AAA   2288/2288
(100 %)
0 diff
(100 %id)
DN989792 brain, whole brain -u 49 to 514 1 to 466       466/466
(100 %)
5 diff
(99.0 %id)
DB502594 hypothalamus -u 63 to 221 1 to 159       159/159
(100 %)
5 diff
(96.9 %id)
AF029780   -u 283 to 2334 1 to 2052 exact AAA   2052/2052
(100 %)
1 diff
(100.0 %id)
AF033382   -u 531 to 2015 1 to 1485 V186E G202D S356N G383S     1485/1485
(100 %)
7 diff
(99.6 %id)
BP307747 brain -u 654 to 1245 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
BP309505 brain -u 654 to 1055 1 to 404       404/587
(68 %)
11 diff
(98.2 %id)
CB155571 brain -u 691 to 1045 1 to 355       355/355
(100 %)
14 diff
(96.1 %id)
R24800 whole brain -u 788 to 1180 1 to 395       395/407
(97 %)
17 diff
(95.9 %id)
F05186 brain, total brain -u 828 to 1039 1 to 211       211/211
(100 %)
5 diff
(97.7 %id)
R20083 whole brain -u 829 to 1220 1 to 398       398/423
(94 %)
25 diff
(94.1 %id)
R21482 whole brain -u 851 to 1003 1 to 153       153/153
(100 %)
3 diff
(98.1 %id)
AA297822 brain -u 1293 to 1582 289 to 1     Submitted on the opposite strand 289/289
(100 %)
5 diff
(98.3 %id)
CB054272 brain, glioblastoma (pooled) -u 1313 to 1863 9 to 559   fully sequenced,   551/559
(98 %)
1 diff
(99.9 %id)
BM714346 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid -u 1362 to 1997 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
AA984726 schizophrenic brain S-11 frontal lobe -u 1377 to 1726 347 to 1       347/347
(100 %)
4 diff
(98.9 %id)
TI_151753740   -u 1661 to 2328 783 to 110   AAA   674/1133
(59 %)
15 diff
(98.7 %id)
CB054271 brain, glioblastoma (pooled) -u 1833 to 2335 537 to 35   fully sequenced, AAA   503/503
(100 %)
1 diff
(99.9 %id)
AA316752 colon -u 1872 to 2270 1 to 398       398/398
(100 %)
2 diff
(99.5 %id)
BQ549847 insulinoma, Pancreas -u 1874 to 2327 7 to 460   fully sequenced,   454/460
(98 %)
6 diff
(98.7 %id)
DB566491 hypothalamus -u 1883 to 2328 1 to 446     Submitted on the opposite strand 446/446
(100 %)
2 diff
(99.6 %id)
DB573822 hypothalamus -u 1887 to 2328 1 to 442     Submitted on the opposite strand 442/442
(100 %)
4 diff
(99.1 %id)
BF516107   -u 1891 to 2328 455 to 18   AAA   438/438
(100 %)
0 diff
(100 %id)
AI274992 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus -u 1892 to 2321 430 to 1       430/430
(100 %)
0 diff
(100 %id)
AI942483 anaplastic oligodendroglioma, brain -u 1911 to 2010 100 to 1       100/100
(100 %)
0 diff
(100 %id)
BX113354 whole brain -u 1923 to 2328 420 to 15   AAA   406/406
(100 %)
0 diff
(100 %id)
AI361583 brain, glioblastoma (pooled) -u 1950 to 2334 385 to 1       385/385
(100 %)
0 diff
(100 %id)
BQ613980 insulinoma, Pancreas -u 1976 to 2239 263 to 1   fully sequenced,   263/263
(100 %)
3 diff
(98.9 %id)
R45529 whole brain -u 1987 to 2329 354 to 9       346/358
(96 %)
0 diff
(100 %id)
DR978438 brain -u 2076 to 2328 1 to 251   AAA Submitted on the opposite strand 251/251
(100 %)
3 diff
(98.9 %id)
Z38223 brain, total brain -u 2098 to 2327 230 to 1       230/230
(100 %)
0 diff
(100 %id)
F04496 brain, total brain -u 2138 to 2327 190 to 1       190/195
(97 %)
0 diff
(100 %id)
DB552079 hippocampus KCNF1.b-u 1 to 465 466 to 2 exact tiling clone,   465/467
(99 %)
0 diff
(100 %id)
DB483182 hippocampus Gene KCNF1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AI566537 anaplastic oligodendroglioma, brain Gene KCNF1, variant not shown       AAA This clone was ignored    
AI859039 anaplastic oligodendroglioma, brain Gene KCNF1, variant not shown       AAA This clone was ignored    
AI859046 anaplastic oligodendroglioma, brain Gene KCNF1, variant not shown       AAA This clone was ignored    
AI859058 anaplastic oligodendroglioma, brain Gene KCNF1, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI