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Gene KCNC4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
153 supporting clones for gene KCNC4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK310193 breast, tumor tissue .a 1 to 2395 2 to 2396 L488P tiling clone,   2396/2396
(100 %)
1 diff
(100.0 %id)
F05920 brain, total brain .a 1685 to 1825 1 to 136       136/150
(90 %)
10 diff
(93.4 %id)
BF760371 colon .a 1923 to 2317 399 to 7     Submitted on the opposite strand 393/402
(97 %)
0 diff
(100 %id)
BF772253 epid_tumor .a 2531 to 2820 310 to 18   tiling clone, Submitted on the opposite strand 293/310
(94 %)
0 diff
(100 %id)
AI204639   .a 2599 to 2965 371 to 5   tiling clone,   367/371
(98 %)
0 diff
(100 %id)
Z38845 brain, total brain .a 2802 to 2964 163 to 1   tiling clone,   163/163
(100 %)
0 diff
(100 %id)
NM_004978.4   .b 1 to 4442 1 to 4442 exact RefSeq,   4442/4445
(99 %)
5 diff
(99.9 %id)
DA647270 mammary gland .b 815 to 1399 2 to 587   tiling clone, capped   586/589
(99 %)
6 diff
(99.0 %id)
AK125567   .b 2470 to 4428 1 to 1958   tiling clone, available from FLJ,   1958/1958
(100 %)
1 diff
(100.0 %id)
BI755315 brain .b 2644 to 3558 1 to 919       919/1000
(91 %)
21 diff
(97.9 %id)
TI_57215507   .b 2644 to 3558 35 to 953       919/1034
(88 %)
21 diff
(98.0 %id)
BP310969 brain .b 2702 to 3293 1 to 592       592/592
(100 %)
5 diff
(99.2 %id)
R18949 whole brain .b 2852 to 3268 1 to 438       438/483
(90 %)
26 diff
(94.7 %id)
BF246964 brain, glioblastoma .b 2885 to 3419 1 to 542   available from MGC,   542/793
(68 %)
29 diff
(96.4 %id)
BC025377 Brain, glioblastoma .b 2886 to 4428 4 to 1546   tiling clone, available from MGC, AAA   1543/1543
(100 %)
0 diff
(100 %id)
BQ447832 Knee, Osteoarthritic Cartilage .b 3009 to 3615 624 to 19   AAA   606/606
(100 %)
5 diff
(99.2 %id)
R77839 placenta .b 3033 to 3392 1 to 368   fully sequenced,   368/368
(100 %)
8 diff
(97.9 %id)
BQ343228 nervous_normal .b 3067 to 3482 426 to 15       412/426
(96 %)
0 diff
(100 %id)
BQ025478 placenta .b 3112 to 3615 524 to 19   AAA   506/506
(100 %)
2 diff
(99.7 %id)
DB362135 mammary gland .b 3134 to 3615 483 to 1       483/487
(99 %)
3 diff
(99.4 %id)
AI631943 Kidney .b 3162 to 3615 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
BF969982 adrenal cortex carcinoma, cell line, adrenal gland .b 3203 to 4014 1 to 806       806/1158
(69 %)
29 diff
(97.5 %id)
DA833543 placenta .b 3280 to 3860 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
R77754 placenta .b 3362 to 3614 271 to 1   fully sequenced,   271/271
(100 %)
6 diff
(97.8 %id)
R44063 whole brain .b 4019 to 4428 421 to 11   AAA   411/417
(98 %)
3 diff
(99.3 %id)
DB380332 placenta .b 4239 to 4428 190 to 1       190/199
(95 %)
1 diff
(99.5 %id)
CN284308 embryonic stem cells, cell lines H1, H7, andH9 .c 1 to 434 1 to 434   tiling clone,   434/434
(100 %)
0 diff
(100 %id)
DA198035 brain .c 187 to 497 2 to 312   capped   311/311
(100 %)
1 diff
(99.7 %id)
NR_036437.1   .c 357 to 4485 1 to 4129 exact RefSeq, tiling clone,   4129/4132
(99 %)
5 diff
(99.9 %id)
DA404087 thalamus .c 358 to 619 2 to 263   capped   262/262
(100 %)
0 diff
(100 %id)
DA236353 brain .c 380 to 892 2 to 514   capped   513/513
(100 %)
0 diff
(100 %id)
DA336007 hippocampus .c 397 to 906 2 to 510   capped   509/509
(100 %)
4 diff
(99.3 %id)
DB091948 testis .c 427 to 983 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB196593 trachea .c 429 to 892 2 to 465   capped   464/464
(100 %)
2 diff
(99.6 %id)
DA336541 hippocampus .c 438 to 1014 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA399559 thalamus .c 489 to 929 2 to 442   capped   441/441
(100 %)
1 diff
(99.8 %id)
DA096755 cerebellum .c 514 to 1082 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA111555 cerebellum .c 523 to 1089 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DR003510 hippocampus .c 827 to 1347 8 to 529       522/529
(98 %)
6 diff
(98.9 %id)
DA099011 cerebellum .c 873 to 1408 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA123159 cerebellum .c 933 to 1249 2 to 318   capped   317/317
(100 %)
0 diff
(100 %id)
DB004712 breast, tumor tissue .c 933 to 1511 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
TI_927043659   .c 1082 to 1863 796 to 16       781/1259
(62 %)
2 diff
(99.9 %id)
TI_927043662   .c 1082 to 2097 1019 to 3       1017/1268
(80 %)
5 diff
(99.7 %id)
TI_927043770   .c 1082 to 1867 790 to 5       786/1260
(62 %)
2 diff
(99.9 %id)
TI_927043771   .c 1082 to 1413 334 to 2       333/1228
(27 %)
0 diff
(100 %id)
TI_927043773   .c 1082 to 2097 1015 to 2       1014/1218
(83 %)
5 diff
(99.6 %id)
TI_927047580   .c 1082 to 1918 43 to 868       826/1059
(77 %)
19 diff
(98.3 %id)
TI_927047899   .c 1082 to 2183 49 to 1142       1094/1230
(88 %)
23 diff
(98.2 %id)
DA413193 thalamus .c 1091 to 1634 2 to 545   capped   544/544
(100 %)
4 diff
(99.3 %id)
TI_927043712   .c 1092 to 2090 996 to 6       991/1190
(83 %)
13 diff
(99.0 %id)
BF732938 fibrotheoma, ovary .c 1116 to 1742 1 to 627     Submitted on the opposite strand 627/627
(100 %)
7 diff
(98.9 %id)
AI991605 pooled germ cell tumors .c 1125 to 1685 1 to 561     Submitted on the opposite strand 561/561
(100 %)
4 diff
(99.3 %id)
AA781718 parathyroid gland, parathyroid tumor .c 1144 to 1597 1 to 454     Submitted on the opposite strand 454/455
(99 %)
22 diff
(95.2 %id)
AA400462 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1144 to 1398 1 to 256     Submitted on the opposite strand 256/256
(100 %)
3 diff
(98.9 %id)
AA860738 parathyroid gland, parathyroid tumor .c 1144 to 1564 1 to 424     Submitted on the opposite strand 424/424
(100 %)
19 diff
(95.6 %id)
AI832082 colon, colon tumor, RER+ .c 1144 to 1742 1 to 599     Submitted on the opposite strand 599/599
(100 %)
7 diff
(98.9 %id)
AI867465 pooled germ cell tumors .c 1144 to 1531 1 to 388     Submitted on the opposite strand 388/389
(99 %)
7 diff
(98.3 %id)
AI742399 pooled .c 1144 to 1654 1 to 513     Submitted on the opposite strand 513/513
(100 %)
5 diff
(99.1 %id)
AI860726 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 1144 to 1523 1 to 380     Submitted on the opposite strand 380/380
(100 %)
0 diff
(100 %id)
DA434918 tongue, tumor tissue .c 1146 to 1633 2 to 490   capped   489/493
(99 %)
2 diff
(99.6 %id)
DB131368 thymus .c 1146 to 1691 2 to 551   capped   550/550
(100 %)
5 diff
(99.1 %id)
DA229759 brain .c 1170 to 1662 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA056087 cerebellum .c 1181 to 1749 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
AA400737 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1405 to 1878 476 to 5     Submitted on the opposite strand 472/476
(99 %)
35 diff
(92.7 %id)
TI_927043772   .c 1483 to 2645 1151 to 4       1148/1213
(94 %)
13 diff
(99.0 %id)
AA442709   .c 1515 to 2084 579 to 6     Submitted on the opposite strand 574/579
(99 %)
38 diff
(93.5 %id)
TI_927043252   .c 1551 to 2591 11 to 1044       1034/1203
(85 %)
19 diff
(98.5 %id)
BC019010 Lung, large cell carcinoma .c 1637 to 3664 218 to 2245   available from MGC, AAA   2028/2056
(98 %)
6 diff
(99.8 %id)
BQ311527 breast_normal .c 1673 to 1878 223 to 17       207/225
(92 %)
5 diff
(97.8 %id)
DA149954 amygdala .c 1873 to 2430 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA775419 brain .c 1900 to 2467 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA837464 placenta .c 2088 to 2651 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BE797712 lung, small cell carcinoma .c 2149 to 2942 1 to 782       782/900
(86 %)
26 diff
(97.2 %id)
BE797730 lung, small cell carcinoma .c 2166 to 2901 16 to 742       727/826
(88 %)
21 diff
(97.5 %id)
BM966789 Islets of Langerhans, Pancreas .c 2289 to 2870 1 to 582       582/582
(100 %)
0 diff
(100 %id)
CK823243 Islets of Langerhans, Pancreas .c 2289 to 2881 1 to 593       593/593
(100 %)
0 diff
(100 %id)
BQ379768 uterus_tumor .c 2381 to 2729 1 to 349       349/349
(100 %)
17 diff
(95.2 %id)
DA936036 Spleen .c 2405 to 2984 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
F07409 brain, total brain .c 2617 to 2895 1 to 280       280/280
(100 %)
8 diff
(97.2 %id)
DA902474   .c 2827 to 3248 2 to 425   capped   424/461
(91 %)
5 diff
(99.0 %id)
BM740454 stomach .c 3084 to 3631 1 to 548       548/548
(100 %)
1 diff
(99.9 %id)
BM747800 stomach .c 3084 to 3658 1 to 574   AAA   574/574
(100 %)
3 diff
(99.5 %id)
BM765446 stomach .c 3084 to 3656 1 to 573       573/573
(100 %)
0 diff
(100 %id)
AI826475 normal prostate, Prostate .c 3127 to 3659 535 to 3       533/535
(99 %)
0 diff
(100 %id)
AA627053 normal prostate, Prostate .c 3142 to 3659 518 to 4       515/518
(99 %)
2 diff
(99.7 %id)
BF589547 Prostate .c 3159 to 3659 503 to 3       501/503
(99 %)
0 diff
(100 %id)
AI868899 Prostate .c 3213 to 3659 449 to 3       447/449
(99 %)
0 diff
(100 %id)
AW959643   .c 3337 to 3869 1 to 533       533/540
(98 %)
23 diff
(95.8 %id)
AI565352 Kidney .c 3337 to 3658 327 to 1       327/345
(94 %)
10 diff
(97.2 %id)
AA151373   .c 3354 to 3659 314 to 1     Submitted on the opposite strand 314/315
(99 %)
10 diff
(96.9 %id)
BQ022636 placenta .c 3357 to 3658 320 to 19   AAA   302/302
(100 %)
0 diff
(100 %id)
AA861995 squamous cell carcinoma from base of tongue, tongue .c 3383 to 3658 302 to 27   AAA   276/276
(100 %)
2 diff
(99.3 %id)
AW075356 colon, juvenile granulosa tumor .c 3474 to 3658 200 to 14   AAA   187/187
(100 %)
2 diff
(99.0 %id)
BP264874 muscle .c 3510 to 4324 1 to 823       823/1001
(82 %)
36 diff
(96.5 %id)
CA312529 Human Lung Epithelial cells, lung .c 3774 to 4471 715 to 19   AAA   697/706
(98 %)
12 diff
(98.4 %id)
R26429 placenta .c 3842 to 4120 1 to 278     Submitted on the opposite strand 278/286
(97 %)
16 diff
(94.5 %id)
AV728045 hypothalamus .c 3891 to 4342 1 to 452       452/452
(100 %)
5 diff
(98.9 %id)
DB312072 thalamus .c 3917 to 4469 554 to 1       554/554
(100 %)
5 diff
(99.1 %id)
BI029770 marrow .c 3938 to 4315 379 to 4       376/379
(99 %)
0 diff
(100 %id)
BG387777 embryonal carcinoma, cell line, testis .c 3943 to 4472 1 to 528       528/549
(96 %)
8 diff
(98.6 %id)
BF061003 pooled .c 3999 to 4472 477 to 4       474/477
(99 %)
0 diff
(100 %id)
BP395401 pancreatic islet .c 4018 to 4472 1 to 455     Submitted on the opposite strand 455/458
(99 %)
1 diff
(99.8 %id)
H11376 whole brain .c 4026 to 4471 465 to 11   AAA   455/455
(100 %)
13 diff
(97.2 %id)
AI240989 Kidney .c 4033 to 4472 442 to 3       440/442
(99 %)
0 diff
(100 %id)
AA678581   .c 4046 to 4472 420 to 1       420/420
(100 %)
9 diff
(97.9 %id)
TI_151731627   .c 4047 to 4471 504 to 79   AAA   426/970
(43 %)
7 diff
(99.3 %id)
BQ189347 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4049 to 4471 1 to 423   AAA   423/423
(100 %)
0 diff
(100 %id)
AW614375 Kidney .c 4059 to 4471 412 to 1       412/412
(100 %)
1 diff
(99.8 %id)
AA775645 heart .c 4104 to 4471 364 to 1       364/364
(100 %)
6 diff
(98.4 %id)
AI916965 pooled germ cell tumors .c 4136 to 4471 336 to 1       336/336
(100 %)
1 diff
(99.8 %id)
AW237067 pooled germ cell tumors .c 4136 to 4471 336 to 1       336/336
(100 %)
0 diff
(100 %id)
BP431831   .c 4162 to 4471 1 to 310   AAA   310/310
(100 %)
3 diff
(99.1 %id)
R41486 whole brain .c 4197 to 4471 290 to 11   AAA   280/324
(86 %)
5 diff
(98.5 %id)
Z40464 brain, total brain .c 4199 to 4471 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
AA809591 normal prostatic epithelial cells, Prostate .c 4221 to 4471 1 to 249   AAA   249/249
(100 %)
10 diff
(96.0 %id)
AW665272 pooled .c 4224 to 4469 253 to 8       246/253
(97 %)
0 diff
(100 %id)
BI009491 kidney_tumor .c 4235 to 4421 1 to 187       187/187
(100 %)
4 diff
(97.9 %id)
F03407 brain, total brain .c 4240 to 4471 232 to 1       232/232
(100 %)
0 diff
(100 %id)
BM712464 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4282 to 4472 240 to 50     Submitted on the opposite strand 191/240
(79 %)
0 diff
(100 %id)
AI369490   .c 4288 to 4480 201 to 9       193/201
(96 %)
0 diff
(100 %id)
AW293592   .c 4340 to 4472 153 to 21       133/153
(86 %)
0 diff
(100 %id)
EH346120   .c 4413 to 4471 1 to 59   AAA   59/59
(100 %)
0 diff
(100 %id)
DR033824   .d 1 to 331 27 to 357   tiling clone,   337/357
(94 %)
6 diff
(98.4 %id)
DB069588 testis .d 1 to 218 2 to 222   tiling clone, capped   221/221
(100 %)
4 diff
(98.2 %id)
NM_001039574.2   .d 575 to 4326 1 to 3752 exact RefSeq,   3752/3755
(99 %)
5 diff
(99.9 %id)
BM966756 Islets of Langerhans, Pancreas .d 2507 to 3006 1 to 500   tiling clone, fully sequenced,   500/500
(100 %)
0 diff
(100 %id)
BM966921 Islets of Langerhans, Pancreas .d 2507 to 3006 1 to 500   fully sequenced,   500/500
(100 %)
0 diff
(100 %id)
BM966873 Islets of Langerhans, Pancreas .d 2507 to 3006 1 to 500   fully sequenced,   500/500
(100 %)
0 diff
(100 %id)
AA397616   .d 2909 to 3238 7 to 334   fully sequenced,   328/334
(98 %)
8 diff
(97.7 %id)
BM893568 Islets of Langerhans, Pancreas .d 2912 to 3500 591 to 3   tiling clone,   589/591
(99 %)
0 diff
(100 %id)
CK823242 Islets of Langerhans, Pancreas .d 2912 to 3500 591 to 3       589/591
(99 %)
1 diff
(99.9 %id)
BX098184   .d 2913 to 3499 1 to 587   AAA   587/587
(100 %)
0 diff
(100 %id)
BM893669 Islets of Langerhans, Pancreas .d 2945 to 3500 558 to 3   fully sequenced,   556/558
(99 %)
0 diff
(100 %id)
BM893632 Islets of Langerhans, Pancreas .d 2945 to 3500 558 to 3   fully sequenced,   556/558
(99 %)
0 diff
(100 %id)
DB340040 testis .d 2947 to 3499 553 to 1       553/553
(100 %)
0 diff
(100 %id)
BM893538 Islets of Langerhans, Pancreas .d 2952 to 3500 551 to 3   fully sequenced,   549/551
(99 %)
0 diff
(100 %id)
R60638 whole brain .d 2953 to 3198 1 to 245       245/247
(99 %)
4 diff
(98.4 %id)
AA151374   .d 3102 to 3500 1 to 401     Submitted on the opposite strand 401/403
(99 %)
7 diff
(98.3 %id)
AA298743 uterus .d 3156 to 3352 1 to 197       197/197
(100 %)
0 diff
(100 %id)
AA435735   .d 3208 to 3505 300 to 2   tiling clone, fully sequenced,   299/300
(99 %)
11 diff
(96.4 %id)
R60585 whole brain .d 3878 to 4312 447 to 11   tiling clone, AAA   437/437
(100 %)
16 diff
(96.4 %id)
M64676 brain stem .e 1 to 1910 8 to 1917 S86T F351I tiling clone,   1910/1917
(99 %)
8 diff
(99.6 %id)
BC101769 Brain, PCR rescued clones .e 93 to 1947 1 to 1855 exact tiling clone,   1855/1855
(100 %)
0 diff
(100 %id)
BX537638 human amygdala .f 1 to 7596 1 to 7600 exact tiling clone, available from DKFZ, AAA   7600/7600
(100 %)
15 diff
(99.9 %id)
BX489205   .f 1 to 715 1 to 715       715/715
(100 %)
0 diff
(100 %id)
DA013083 adrenal gland .f 2041 to 2338 286 to 583   capped   298/582
(51 %)
6 diff
(99.0 %id)
TI_927047675   .f 3282 to 4368 1144 to 74       1071/1263
(84 %)
0 diff
(100 %id)
TI_927047906   .f 3306 to 4368 1115 to 71       1045/1228
(85 %)
0 diff
(100 %id)
TI_927043253   .f 3423 to 4368 9 to 954       946/1199
(78 %)
1 diff
(100.0 %id)
BM799564 eye, retinoblastoma .f 3562 to 4394 1 to 834   AAA   834/1087
(76 %)
12 diff
(98.9 %id)
TI_927043251   .f 3783 to 4368 1 to 586       586/1189
(49 %)
3 diff
(99.8 %id)
DC335872 hippocampus .g 1 to 580 1 to 580   tiling clone,   580/580
(100 %)
0 diff
(100 %id)
AK295076 brain .g 62 to 1517 1 to 1456   tiling clone,   1456/1456
(100 %)
3 diff
(99.8 %id)
DC324321 brain .g 62 to 647 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BG323577 Kidney, renal cell adenocarcinoma .g 788 to 1578 1 to 784   tiling clone,   784/943
(83 %)
31 diff
(96.8 %id)
DB060367 testis .g 1188 to 1737 2 to 551   tiling clone, capped   550/550
(100 %)
3 diff
(99.5 %id)
BU188711 melanotic melanoma, skin .g 1438 to 2294 1 to 864   tiling clone,   864/865
(99 %)
19 diff
(97.9 %id)
AA326357 brain, cerebellum .g 1938 to 2374 1 to 437   tiling clone,   437/439
(99 %)
3 diff
(99.4 %id)
DB339182 testis .g 3278 to 3827 550 to 1   tiling clone,   550/550
(100 %)
0 diff
(100 %id)
DC425920 hippocampus .g 3280 to 3827 548 to 1       548/550
(99 %)
0 diff
(100 %id)
DA809016 brain .g 3372 to 3908 2 to 538 exact tiling clone, to resequence, capped   537/537
(100 %)
0 diff
(100 %id)
DB327302 brain .g 4647 to 5167 524 to 3   tiling clone, to resequence,   522/524
(99 %)
0 diff
(100 %id)
AA369304 placenta .h-u 1 to 314 1 to 317 exact tiling clone,   317/321
(98 %)
5 diff
(98.5 %id)
AW962648   .h-u 2 to 392 1 to 391 exact tiling clone, AAA Possibly primed on the genome, locally A rich (19/21 A in genome downstream of last aligned base) 391/391
(100 %)
0 diff
(100 %id)
AI969185 brain, four pooled pituitary adenomas .h-u 22 to 393 372 to 1       372/372
(100 %)
6 diff
(98.4 %id)
AA369303 placenta .h-u 137 to 392 256 to 1       256/256
(100 %)
0 diff
(100 %id)
BF333203 breast Gene KCNC4, variant not shown         This clone was ignored    
AI086955 senescent fibroblast Gene KCNC4, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC