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Gene CEP170TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
379 supporting clones for gene CEP170 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB069939 testis .a 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
DB079917 testis .a 53 to 612 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA511421 brain .a 154 to 680 2 to 528   tiling clone, capped   527/527
(100 %)
0 diff
(100 %id)
NM_014812.2   .a 532 to 7714 1 to 7183 exact RefSeq, AAA   7183/7183
(100 %)
0 diff
(100 %id)
AB022657   .a 887 to 7714 1 to 6830 G213S tiling clone,   6830/6830
(100 %)
7 diff
(99.9 %id)
DA522320 brain .a 1891 to 2456 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BQ229184 embryonal carcinoma, cell line, testis .a 1976 to 2441 1 to 472       472/1049
(44 %)
14 diff
(98.7 %id)
BY795229 eye .a 2031 to 2553 1 to 523       523/523
(100 %)
0 diff
(100 %id)
BM754457 stomach .a 2087 to 2571 1 to 485       485/485
(100 %)
2 diff
(99.6 %id)
BF811880 colon_ins .a 2088 to 2452 366 to 1     Submitted on the opposite strand 366/366
(100 %)
5 diff
(98.7 %id)
NM_001042404.1   .b 1 to 6889 1 to 6889 exact RefSeq, AAA   6889/6889
(100 %)
0 diff
(100 %id)
AB022658   .b 356 to 6889 1 to 6536 G213S tiling clone,   6536/6536
(100 %)
7 diff
(99.9 %id)
BC140794 Brain, cerebellum, PCR rescued clones .b 365 to 5108 1 to 4744 G213S     4744/4744
(100 %)
1 diff
(100.0 %id)
AK001664   .b 2419 to 6097 1 to 3680   tiling clone, available from FLJ,   3680/3680
(100 %)
4 diff
(99.9 %id)
CX756838 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 3080 to 3813 1 to 734     Submitted on the opposite strand 734/734
(100 %)
1 diff
(99.9 %id)
DA103473 cerebellum .b 3291 to 3833 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA774347 brain .b 3291 to 3861 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA509265 brain .b 3309 to 3882 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA933070 Spleen .b 3334 to 3881 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB094633 testis .b 3337 to 3891 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA479720   .b 3346 to 3878 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA803666 brain .b 3453 to 4020 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
AW992561 breast_normal .b 3456 to 3963 1 to 508       508/508
(100 %)
7 diff
(98.7 %id)
BQ921052 leiomyosarcoma, uterus .b 3562 to 4439 1 to 878       878/917
(95 %)
8 diff
(99.2 %id)
CN307979 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3565 to 4320 1 to 755       755/756
(99 %)
12 diff
(98.5 %id)
BQ962469 leiomyosarcoma, uterus .b 3623 to 4344 1 to 725       725/919
(78 %)
4 diff
(99.6 %id)
BG314853   .b 3660 to 3851 193 to 1       193/193
(100 %)
4 diff
(98.0 %id)
DA101736 cerebellum .b 3710 to 4252 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA196528 amygdala .b 3745 to 4307 2 to 564   capped   563/563
(100 %)
4 diff
(99.3 %id)
BU171483 melanotic melanoma, skin .b 3790 to 4579 12 to 807       796/879
(90 %)
30 diff
(96.6 %id)
AK313722   .b 3917 to 4869 1 to 954       954/954
(100 %)
4 diff
(99.6 %id)
DA793300.
matches multiple genes
brain .b 3917 to 4447 2 to 532   tiling clone, capped also hits gene CEP170L 531/531
(100 %)
1 diff
(99.9 %id)
DA749521.
matches multiple genes
  .b 3918 to 4493 2 to 578   tiling clone, capped also hits gene CEP170L 577/577
(100 %)
1 diff
(99.9 %id)
AA373122 lung .b 3984 to 4293 1 to 310       310/310
(100 %)
0 diff
(100 %id)
DA396504 thalamus .b 4030 to 4623 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
TI_1968230465   .b 4095 to 5109 1118 to 99     Submitted on the opposite strand 1020/1328
(76 %)
10 diff
(99.3 %id)
DA726080   .b 4118 to 4677 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA472409   .c 1 to 527 2 to 528   tiling clone, capped   527/527
(100 %)
0 diff
(100 %id)
DA509299 brain .c 10 to 580 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DC344433 thalamus .c 223 to 772 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC376964 brain .c 229 to 756 1 to 528       528/528
(100 %)
0 diff
(100 %id)
NM_001042405.1   .c 307 to 7117 1 to 6811 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 6811/6811
(100 %)
0 diff
(100 %id)
BP349680 brain .c 307 to 893 1 to 587       587/587
(100 %)
4 diff
(99.4 %id)
BP349206 brain .c 360 to 940 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP309816 brain .c 376 to 956 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BP337093 coronary artery .c 378 to 965 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
DC391105 Spleen .c 380 to 856 1 to 480       480/480
(100 %)
3 diff
(99.4 %id)
DC345595 tongue, tumor tissue .c 383 to 948 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BC050722 Testis, embryonal carcinoma .c 392 to 2058 1 to 1666   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1666/1667
(99 %)
8 diff
(99.6 %id)
BQ213480 embryonal carcinoma, cell line, testis .c 393 to 991 1 to 599   available from MGC,   599/1018
(58 %)
5 diff
(99.6 %id)
BG390699 embryonal carcinoma, cell line, testis .c 396 to 1136 1 to 754       754/758
(99 %)
35 diff
(95.4 %id)
BG390789 embryonal carcinoma, cell line, testis .c 396 to 1016 1 to 622       622/717
(86 %)
17 diff
(97.7 %id)
DC352147 brain .c 431 to 1003 1 to 574       574/574
(100 %)
10 diff
(98.3 %id)
DC376266 brain .c 431 to 887 1 to 457       457/457
(100 %)
0 diff
(100 %id)
DC351028 brain .c 439 to 989 1 to 551       551/552
(99 %)
1 diff
(99.9 %id)
DC378049 brain .c 446 to 970 1 to 527       527/528
(99 %)
3 diff
(99.5 %id)
BX643277   .c 449 to 1142 1 to 691       691/691
(100 %)
5 diff
(99.3 %id)
DC328263 corpus callosum .c 450 to 991 1 to 544       544/549
(99 %)
3 diff
(99.5 %id)
DC352179 brain .c 450 to 1015 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
DC355157   .c 450 to 991 1 to 546       546/557
(98 %)
6 diff
(99.0 %id)
DC356166   .c 452 to 991 1 to 540       540/546
(98 %)
2 diff
(99.7 %id)
BP278809   .c 452 to 1034 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC416404 trachea .c 452 to 1015 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC376680 brain .c 459 to 935 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
CN307977 embryonic stem cells, cell lines H1, H7, andH9 .c 463 to 979 1 to 517       517/517
(100 %)
2 diff
(99.7 %id)
DC375404 brain .c 463 to 869 1 to 411       411/411
(100 %)
4 diff
(99.1 %id)
BP230452 brain .c 464 to 1045 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP281349 bone marrow .c 464 to 1031 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
DC325653 caudate nucleus .c 466 to 1043 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
DC329696 corpus callosum .c 466 to 1018 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
BP229297 brain .c 466 to 1047 1 to 582       582/583
(99 %)
4 diff
(99.4 %id)
DC350741 brain .c 466 to 1024 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC351420 brain .c 466 to 932 1 to 467       467/467
(100 %)
0 diff
(100 %id)
DC353410 brain .c 466 to 1037 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC374749 brain .c 466 to 1043 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC375988 brain .c 466 to 948 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
DC377959 brain .c 466 to 1020 1 to 557       557/557
(100 %)
3 diff
(99.5 %id)
DA767916 brain .c 467 to 1166 2 to 703   capped   702/702
(100 %)
4 diff
(99.5 %id)
BP229965 brain .c 469 to 1051 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
CD654862 Embryonic Stem cells .c 470 to 987 12 to 529       518/833
(62 %)
19 diff
(97.8 %id)
DR001470 fetal brain .c 472 to 1195 1 to 724       724/724
(100 %)
5 diff
(99.4 %id)
DC350698 brain .c 482 to 1056 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC374390 brain .c 493 to 1063 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DC377411 brain .c 499 to 985 1 to 487       487/487
(100 %)
0 diff
(100 %id)
DC353223 brain .c 500 to 1059 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC375284 brain .c 501 to 1073 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DC375873 brain .c 501 to 1084 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
DC400754 testis .c 501 to 1052 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
DC349965 brain .c 502 to 1078 1 to 580       580/580
(100 %)
3 diff
(99.5 %id)
DC374927 brain .c 509 to 1080 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DC317165 amygdala .c 510 to 971 1 to 462       462/462
(100 %)
0 diff
(100 %id)
DC346825 tongue, tumor tissue .c 510 to 1056 1 to 549       549/549
(100 %)
2 diff
(99.7 %id)
BP230318 brain .c 510 to 1082 1 to 573       573/582
(98 %)
3 diff
(99.5 %id)
DC350242 brain .c 510 to 969 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
DC353549 brain .c 510 to 1098 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DC428979   .c 510 to 1095 1 to 586       586/587
(99 %)
1 diff
(99.9 %id)
DC374868 brain .c 510 to 1087 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
DC375244 brain .c 510 to 1081 1 to 572       572/572
(100 %)
2 diff
(99.7 %id)
DC375815 brain .c 510 to 1086 1 to 580       580/580
(100 %)
3 diff
(99.5 %id)
DC374246 brain .c 535 to 1105 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DC357578   .c 560 to 869 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
DA932291 Spleen .c 648 to 1210 2 to 564   capped   563/564
(99 %)
0 diff
(100 %id)
DA775457 brain .c 656 to 1236 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
AB007939 brain .c 662 to 7117 1 to 6456 G213S tiling clone, available from KIAA,   6456/6456
(100 %)
1 diff
(100.0 %id)
AB022659 brain .c 662 to 7117 1 to 6456 G213S     6456/6456
(100 %)
1 diff
(100.0 %id)
BC146790 Clones donated by Kazusa DNA Research Inst. .c 662 to 7117 1 to 6456 G213S AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 6456/6456
(100 %)
1 diff
(100.0 %id)
DW413109 Liver .c 673 to 976 18 to 321       305/321
(95 %)
6 diff
(98.2 %id)
TI_1968235627   .c 700 to 1921 1207 to 3       1205/1265
(95 %)
27 diff
(97.9 %id)
AI656974 pooled germ cell tumors .c 715 to 1319 605 to 1       605/605
(100 %)
2 diff
(99.7 %id)
AI657073 pooled germ cell tumors .c 715 to 1318 604 to 1       604/604
(100 %)
0 diff
(100 %id)
BP309644 brain .c 988 to 1570 1 to 583   tiling clone,   583/583
(100 %)
6 diff
(99.0 %id)
BI016671 lung_tumor .c 989 to 1324 19 to 353       340/353
(96 %)
7 diff
(98.1 %id)
BP357392 mammary gland .c 1042 to 1623 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BG201508   .c 1347 to 1826 499 to 18     Submitted on the opposite strand 482/499
(96 %)
0 diff
(100 %id)
TI_1968235625   .c 1701 to 2870 1184 to 23       1162/1262
(92 %)
22 diff
(98.3 %id)
BX493895   .c 2015 to 2451 1 to 439       439/439
(100 %)
6 diff
(98.7 %id)
CN307982 embryonic stem cells, cell lines H1, H7, andH9 .c 2019 to 2682 1 to 664       664/664
(100 %)
0 diff
(100 %id)
TI_1968234335.
matches multiple genes
  .c 2263 to 3183 945 to 23   tiling clone, also hits gene CEP170L 923/1353
(68 %)
0 diff
(100 %id)
BX473655   .c 2283 to 2923 1 to 640       640/640
(100 %)
4 diff
(99.4 %id)
AW161198.
matches multiple genes
brain, frontal lobe .c 2300 to 2680 1 to 381     also hits gene CEP170L 381/383
(99 %)
5 diff
(98.7 %id)
CN307980 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 2453 to 2731 1 to 279       279/279
(100 %)
1 diff
(99.7 %id)
BU622235 Cell Line, Chondrosarcoma .c 2485 to 3114 635 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 630/635
(99 %)
0 diff
(100 %id)
DA507001 brain .c 2496 to 3058 2 to 564   capped   563/564
(99 %)
1 diff
(99.9 %id)
TI_1968234375.
matches multiple genes
  .c 2561 to 3654 1103 to 22   tiling clone, also hits gene CEP170L 1082/1253
(86 %)
0 diff
(100 %id)
DR002510 fetal brain .c 2589 to 3291 10 to 713       704/713
(98 %)
6 diff
(99.2 %id)
BX499771 Liver .c 2604 to 3169 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DA808700 brain .c 2640 to 3180 2 to 539   capped   538/538
(100 %)
4 diff
(99.3 %id)
DA808111 brain .c 2653 to 3210 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA791846 brain .c 2659 to 3214 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
TI_1968234947   .c 2716 to 3774 1064 to 10       1055/1263
(83 %)
0 diff
(100 %id)
DA330472 hippocampus .c 2724 to 3278 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AU132890   .c 2726 to 3540 2 to 816   capped   815/815
(100 %)
9 diff
(98.9 %id)
TI_151775858   .c 2744 to 3394 106 to 755   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 650/969
(67 %)
20 diff
(98.0 %id)
DA778368 brain .c 2748 to 3310 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
CN307984 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 2781 to 3326 9 to 554       546/554
(98 %)
6 diff
(99.0 %id)
BM676350.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2782 to 3394 614 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, also hits gene CEP170L 612/614
(99 %)
0 diff
(100 %id)
BE780787 eye, retinoblastoma .c 2790 to 3508 1 to 727       727/824
(88 %)
15 diff
(98.2 %id)
BE079749.
matches multiple genes
breast .c 2812 to 3181 1 to 371     also hits gene CEP170L 371/375
(98 %)
8 diff
(97.9 %id)
BE079733.
matches multiple genes
breast .c 2816 to 3181 16 to 382     also hits gene CEP170L 367/386
(95 %)
6 diff
(98.5 %id)
AW157594.
matches multiple genes
brain, frontal lobe .c 2830 to 3382 554 to 2     also hits gene CEP170L 553/563
(98 %)
0 diff
(100 %id)
BF436065.
matches multiple genes
pooled .c 2830 to 3381 551 to 1     also hits gene CEP170L 551/551
(100 %)
2 diff
(99.7 %id)
DA490429 brain .c 2839 to 3417 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
CF130036.
matches multiple genes
Chondrosarcoma Lung Metastasis cell lines, lung .c 2842 to 3400 1 to 559   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, also hits gene CEP170L 559/567
(98 %)
2 diff
(99.7 %id)
TI_154191945   .c 2842 to 3400 51 to 609   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 559/1036
(53 %)
2 diff
(99.9 %id)
BG180880 adenocarcinoma, cell line, Prostate .c 2892 to 3510 1 to 620       620/679
(91 %)
22 diff
(96.8 %id)
AW450812   .c 2944 to 3382 450 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 439/450
(97 %)
0 diff
(100 %id)
AL701798 human skeletal muscle .c 2955 to 3318 1 to 364       364/364
(100 %)
0 diff
(100 %id)
BF993307.
matches multiple genes
placenta_normal .c 2993 to 3264 23 to 292     also hits gene CEP170L 270/305
(88 %)
8 diff
(97.4 %id)
DA798591 brain .c 2993 to 3546 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BY995500.
matches multiple genes
  .c 2995 to 3712 10 to 727   tiling clone, also hits gene CEP170L 718/727
(98 %)
6 diff
(99.2 %id)
BM904540 leiomyosarcoma, uterus .c 2996 to 3908 1 to 915       915/1066
(85 %)
18 diff
(98.4 %id)
BF436202.
matches multiple genes
pooled .c 3016 to 3381 366 to 1     also hits gene CEP170L 366/366
(100 %)
8 diff
(97.9 %id)
DA248299 brain .c 3027 to 3617 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA405465 thalamus .c 3088 to 3657 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BF912321 uterus_tumor .c 3116 to 3554 439 to 1     Submitted on the opposite strand 439/439
(100 %)
11 diff
(97.5 %id)
DA212863 brain .c 3119 to 3663 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BP202149 amygdala .c 3130 to 3710 1 to 581       581/581
(100 %)
6 diff
(99.0 %id)
DB151154 thymus .c 3158 to 3734 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA725222   .c 3204 to 3783 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BF989520.
matches multiple genes
placenta_normal .c 3208 to 3560 393 to 40     also hits gene CEP170L 354/393
(90 %)
0 diff
(100 %id)
BG897870 cartilage .c 3236 to 3849 41 to 654       614/654
(93 %)
6 diff
(99.1 %id)
ES315867 melanoma cell line .c 3236 to 3516 39 to 319       281/491
(57 %)
1 diff
(99.8 %id)
DA533344 brain .c 3242 to 3805 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA387372 thalamus .c 3276 to 3847 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA240066 brain .c 3284 to 3863 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA799919 brain .c 3372 to 3932 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AA333163 Embryo, 8 weeks .c 3377 to 3562 1 to 187       187/187
(100 %)
3 diff
(98.4 %id)
AA219331 brain, neuroepithelial cells .c 3377 to 3614 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
DA322157 hippocampus .c 3380 to 4026 2 to 649   capped   648/648
(100 %)
1 diff
(99.9 %id)
DA315732 hippocampus .c 3393 to 3960 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA221005 brain .c 3397 to 3928 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
N84949   .c 3404 to 3824 1 to 418       418/531
(78 %)
5 diff
(99.1 %id)
DA249972 brain .c 3539 to 4121 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA806685 brain .c 3565 to 4126 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DB028057.
matches multiple genes
testis .c 3613 to 4151 2 to 540   tiling clone, capped also hits gene CEP170L 539/539
(100 %)
2 diff
(99.7 %id)
BU175870 melanotic melanoma, skin .c 3690 to 4487 12 to 815   available from MGC,   804/894
(89 %)
15 diff
(98.4 %id)
AA332469 Embryo, 8 weeks .c 3699 to 3973 1 to 281       281/286
(98 %)
7 diff
(97.6 %id)
BF931710.
matches multiple genes
nervous_tumor .c 4197 to 4571 8 to 382     also hits gene CEP170L 375/382
(98 %)
7 diff
(98.2 %id)
DA122963 cerebellum .c 4311 to 4861 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
AA167129   .c 4439 to 4832 1 to 395       395/395
(100 %)
3 diff
(99.3 %id)
DA495274 brain .c 4442 to 5020 2 to 581   capped   580/581
(99 %)
2 diff
(99.7 %id)
D81444.
matches multiple genes
brain .c 4451 to 4702 1 to 252     also hits gene CEP170L 252/252
(100 %)
0 diff
(100 %id)
BE764247 nervous_tumor .c 4533 to 4822 290 to 1       290/295
(98 %)
2 diff
(99.4 %id)
BX955260   .c 4539 to 5174 1 to 636       636/636
(100 %)
2 diff
(99.7 %id)
R36326 whole brain .c 4551 to 4946 1 to 398       398/398
(100 %)
2 diff
(99.5 %id)
BG034957 adenocarcinoma, cell line, Liver .c 4581 to 5242 1 to 663       663/719
(92 %)
7 diff
(99.1 %id)
AA446686   .c 4630 to 5118 1 to 486       486/490
(99 %)
4 diff
(99.2 %id)
BI871187 adenocarcinoma, cell line, Liver .c 4656 to 5485 1 to 835       836/836
(100 %)
28 diff
(96.7 %id)
TI_57230403   .c 4656 to 5485 88 to 922       836/836
(100 %)
28 diff
(96.7 %id)
TI_57170180   .c 4702 to 5078 36 to 412   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 377/904
(41 %)
7 diff
(99.3 %id)
BI825133 brain, medulla .c 4705 to 5078 1 to 374   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 374/866
(43 %)
1 diff
(99.9 %id)
AA421503   .c 4715 to 5009 7 to 301   fully sequenced,   295/301
(98 %)
6 diff
(98.1 %id)
AI149749   .c 4746 to 5199 469 to 16   AAA   454/454
(100 %)
0 diff
(100 %id)
DB516960 testis .c 4755 to 5197 9 to 451     Submitted on the opposite strand 443/451
(98 %)
10 diff
(97.8 %id)
CN307981 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 4762 to 5509 1 to 747       747/747
(100 %)
1 diff
(99.9 %id)
AI149745   .c 4774 to 5199 450 to 25   AAA   426/426
(100 %)
0 diff
(100 %id)
AA628331   .c 4829 to 5199 370 to 1       370/370
(100 %)
2 diff
(99.5 %id)
DA485513 brain .c 4877 to 5430 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BE620322 large cell carcinoma, undifferentiated, lung .c 4919 to 5656 1 to 737       737/768
(95 %)
20 diff
(97.4 %id)
BE780631 eye, retinoblastoma .c 4923 to 5689 1 to 769       769/771
(99 %)
27 diff
(96.5 %id)
AA421472   .c 4979 to 5202 224 to 1   fully sequenced,   224/224
(100 %)
1 diff
(99.6 %id)
BE782047 eye, retinoblastoma .c 5021 to 5758 1 to 740       740/885
(83 %)
43 diff
(95.2 %id)
BQ354981.
matches multiple genes
head_neck .c 5078 to 5681 10 to 610   tiling clone, also hits gene CEP170L 601/610
(98 %)
6 diff
(99.1 %id)
C16019   .c 5080 to 5407 1 to 322       322/329
(97 %)
9 diff
(97.3 %id)
BI260127 cervical carcinoma cell line, cervix .c 5107 to 5605 42 to 549       508/568
(89 %)
20 diff
(96.5 %id)
N51847.
matches multiple genes
multiple sclerosis lesions .c 5192 to 5261 70 to 1   fully sequenced, also hits gene CEP170L 70/70
(100 %)
0 diff
(100 %id)
N54112.
matches multiple genes
multiple sclerosis lesions .c 5194 to 5258 1 to 65   tiling clone, fully sequenced, also hits gene CEP170L 65/65
(100 %)
0 diff
(100 %id)
DB110781 thymus .c 5272 to 5859 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA357290 subthalamic nucleus .c 5279 to 5830 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA472612   .c 5284 to 5794 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
BX478215   .c 5303 to 5904 1 to 602       602/602
(100 %)
2 diff
(99.7 %id)
CB110950 Liver .c 5303 to 5918 1 to 616       616/616
(100 %)
1 diff
(99.9 %id)
CB164313 Liver .c 5347 to 5817 13 to 483       471/483
(97 %)
6 diff
(98.8 %id)
AW969861.
matches multiple genes
  .c 5395 to 5652 114 to 371   tiling clone, also hits gene CEP170L 258/468
(55 %)
5 diff
(99.0 %id)
AA483747 Kidney .c 5402 to 5652 1 to 251       251/252
(99 %)
5 diff
(98.1 %id)
DB035418 testis .c 5407 to 5972 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BX353632 Neuroblastoma Cot 25-normalized .c 5411 to 5864 1 to 455       455/455
(100 %)
1 diff
(99.8 %id)
Z44157 brain, total brain .c 5428 to 5683 1 to 257       257/257
(100 %)
2 diff
(99.3 %id)
F12237 brain, total brain .c 5428 to 5723 1 to 298       298/298
(100 %)
2 diff
(99.4 %id)
F12238 brain, total brain .c 5428 to 5681 1 to 255       255/255
(100 %)
2 diff
(99.3 %id)
R12137 whole brain .c 5429 to 5902 1 to 480       480/480
(100 %)
9 diff
(98.2 %id)
BF106133 lung .c 5476 to 6101 1 to 631       631/780
(80 %)
30 diff
(96.2 %id)
BF352220.
matches multiple genes
head_neck .c 5488 to 5584 1 to 98     also hits gene CEP170L 98/102
(96 %)
7 diff
(93.2 %id)
BF978176 melanotic melanoma, high MDR, skin .c 5524 to 6166 1 to 639       639/640
(99 %)
18 diff
(97.2 %id)
AA715476 Ewing's sarcoma .c 5540 to 5839 1 to 300       300/300
(100 %)
0 diff
(100 %id)
BM468365 leiomyosarcoma, uterus .c 5572 to 6536 1 to 972       972/1103
(88 %)
26 diff
(97.7 %id)
EH336976.
matches multiple genes
  .c 5581 to 5643 1 to 63     also hits gene CEP170L 63/64
(98 %)
1 diff
(98.5 %id)
H85831 eye, retina .c 5624 to 6078 1 to 456       456/458
(99 %)
13 diff
(97.2 %id)
H86628 eye, retina .c 5625 to 6064 1 to 443       443/446
(99 %)
13 diff
(97.1 %id)
BX089507 eye, retina .c 5626 to 6386 1 to 762       762/762
(100 %)
6 diff
(99.3 %id)
BF700330 brain, primitive neuroectoderm .c 5691 to 6339 1 to 645       645/803
(80 %)
28 diff
(96.6 %id)
BU729181.
matches multiple genes
eye, human retina .c 5729 to 6330 604 to 2     also hits gene CEP170L 603/613
(98 %)
0 diff
(100 %id)
BG119196 adenocarcinoma, cell line, Liver .c 5760 to 6531 1 to 774       774/890
(86 %)
21 diff
(97.7 %id)
BF248387 melanotic melanoma, high MDR, skin .c 5766 to 6398 1 to 636       636/874
(72 %)
26 diff
(97.1 %id)
BG496145 lung, mucoepidermoid carcinoma .c 5812 to 6456 1 to 656       656/658
(99 %)
19 diff
(97.2 %id)
BG494214 lung, mucoepidermoid carcinoma .c 5812 to 6502 1 to 693       693/693
(100 %)
6 diff
(99.2 %id)
AU154336   .c 5820 to 6325 502 to 1       502/567
(88 %)
10 diff
(98.3 %id)
BM800621 leiomyosarcoma, uterus .c 5875 to 6649 1 to 772   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 772/772
(100 %)
3 diff
(99.7 %id)
GD145957.
matches multiple genes
  .c 5882 to 5993 112 to 1     Submitted on the opposite strand, also hits gene CEP170L 112/114
(98 %)
4 diff
(96.5 %id)
BE043075 carcinoid, lung .c 5892 to 6373 1 to 482     Submitted on the opposite strand 482/482
(100 %)
2 diff
(99.6 %id)
AI689737 carcinoid, lung .c 5893 to 6452 1 to 560     Submitted on the opposite strand 560/560
(100 %)
3 diff
(99.5 %id)
BF672862 muscle (skeletal) .c 5919 to 6547 1 to 624       624/626
(99 %)
8 diff
(98.8 %id)
BF982015 duodenal adenocarcinoma, cell line, small intestine .c 5936 to 6672 54 to 784       731/1141
(64 %)
32 diff
(97.2 %id)
CN478891 Human Lung Epithelial cells, lung .c 5936 to 6653 732 to 15   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 718/718
(100 %)
1 diff
(99.9 %id)
BE327594 carcinoid, lung .c 5979 to 6313 1 to 335     Submitted on the opposite strand 335/335
(100 %)
4 diff
(98.9 %id)
AA126839 lung, lung carcinoma .c 6005 to 6666 1 to 661   fully sequenced,   661/661
(100 %)
9 diff
(98.7 %id)
AA247364   .c 6006 to 6176 1 to 162       162/162
(100 %)
11 diff
(93.3 %id)
CF455009 peripheral nervous system .c 6013 to 6764 32 to 776       745/916
(81 %)
8 diff
(99.2 %id)
AA190218   .c 6112 to 6304 194 to 4       191/196
(97 %)
0 diff
(100 %id)
AA837471 germinal center B cell .c 6125 to 6664 540 to 1       540/540
(100 %)
3 diff
(99.5 %id)
AI817241 lymph node, lymphoma, follicular mixed small and largecell .c 6134 to 6655 523 to 1       523/523
(100 %)
2 diff
(99.7 %id)
AI890130 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 6136 to 6655 520 to 1       520/520
(100 %)
0 diff
(100 %id)
AA446561   .c 6237 to 6658 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AA126789 lung, lung carcinoma .c 6421 to 6656 237 to 1   fully sequenced,   237/237
(100 %)
0 diff
(100 %id)
R49257 whole brain .c 6452 to 6663 211 to 1       211/211
(100 %)
11 diff
(94.8 %id)
AA167130   .c 6701 to 7118 423 to 5       419/424
(98 %)
0 diff
(100 %id)
R15070 whole brain .c 6776 to 7113 342 to 3       340/473
(71 %)
7 diff
(98.6 %id)
F09864 brain, total brain .c 6841 to 7106 266 to 1       266/266
(100 %)
0 diff
(100 %id)
F09865 brain, total brain .c 6861 to 7106 246 to 1       246/246
(100 %)
1 diff
(99.6 %id)
H85363 eye, retina .c 6945 to 7094 150 to 1       150/150
(100 %)
0 diff
(100 %id)
Z40148 brain, total brain .c 6947 to 7106 160 to 1       160/163
(98 %)
1 diff
(99.4 %id)
AA188110   .d 1 to 320 1 to 317   tiling clone,   317/317
(100 %)
8 diff
(97.5 %id)
AA187982   .d 1357 to 1968 601 to 1   tiling clone,   601/607
(99 %)
15 diff
(97.6 %id)
BC078155 Skin, melanotic melanoma. .e 1 to 2873 1 to 2872 exact tiling clone, available from MGC, AAA   2872/2877
(99 %)
2 diff
(100.0 %id)
AA707593   .e 987 to 1457 475 to 6       470/475
(98 %)
1 diff
(99.8 %id)
AA812955.
matches multiple genes
  .e 1118 to 1457 344 to 6   tiling clone, also hits gene CEP170L 339/344
(98 %)
1 diff
(99.8 %id)
AA585332   .e 1981 to 2163 179 to 1       179/182
(98 %)
4 diff
(97.9 %id)
DA128172 cerebellum .e 1994 to 2568 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
R70220 breast .e 1996 to 2484 1 to 492       492/493
(99 %)
19 diff
(96.2 %id)
BU589111 mixed (pool of 40 RNAs) .e 2004 to 2488 1 to 486   AAA   486/493
(98 %)
4 diff
(99.2 %id)
AA626736 lung, lung carcinoma .e 2009 to 2382 1 to 374       374/374
(100 %)
1 diff
(99.8 %id)
AI079301 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2011 to 2482 472 to 1       472/473
(99 %)
0 diff
(100 %id)
AI246325 follicular lymphoma, lymph node .e 2014 to 2488 475 to 1       475/475
(100 %)
2 diff
(99.6 %id)
N75599.
matches multiple genes
lung .e 2030 to 2488 464 to 1     also hits gene CEP170L 464/468
(99 %)
15 diff
(96.8 %id)
BG025184 lymph, lymphoma, cell line .e 2040 to 2791 1 to 750       750/1002
(74 %)
40 diff
(96.1 %id)
AA585391   .e 2041 to 2157 113 to 1       113/114
(99 %)
4 diff
(96.5 %id)
AV737968 cord Blood .e 2044 to 2488 44 to 475   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 432/475
(90 %)
6 diff
(98.8 %id)
AI565742 anaplastic oligodendroglioma, brain .e 2045 to 2488 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
AI291632 carcinoid, lung .e 2058 to 2491 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
AI826581 lymph node, lymphoma, follicular mixed small and largecell .e 2064 to 2489 426 to 1       426/426
(100 %)
0 diff
(100 %id)
AA406305.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2069 to 2489 421 to 1     also hits gene CEP170L 421/421
(100 %)
1 diff
(99.8 %id)
AI752998 bone marrow stroma .e 2097 to 2488 411 to 20   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 392/392
(100 %)
0 diff
(100 %id)
AW296525   .e 2107 to 2488 397 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 382/382
(100 %)
0 diff
(100 %id)
R32542 placenta .e 2129 to 2430 1 to 309       309/309
(100 %)
8 diff
(97.5 %id)
AI267325 brain, frontal lobe (see description) .e 2161 to 2705 560 to 18       543/560
(96 %)
0 diff
(100 %id)
AA302753 adipose tissue, white .e 2266 to 2488 223 to 1       223/223
(100 %)
1 diff
(99.6 %id)
D81808 brain .e 2280 to 2478 1 to 198       198/208
(95 %)
2 diff
(99.1 %id)
AL110437 testis .e 2294 to 2929 1 to 638       638/638
(100 %)
2 diff
(99.7 %id)
BP207257 coronary artery .e 2298 to 2868 1 to 572       572/572
(100 %)
5 diff
(99.2 %id)
BG434772 placenta .e 2344 to 2837 1 to 492       492/507
(97 %)
9 diff
(98.3 %id)
BF816818 colon_ins .e 2353 to 2739 1 to 385       385/388
(99 %)
26 diff
(93.3 %id)
BX472640   .e 2412 to 2950 561 to 20   AAA Submitted on the opposite strand 542/542
(100 %)
2 diff
(99.7 %id)
BM904944 melanotic melanoma, skin .e 2428 to 2950 1 to 524       524/528
(99 %)
2 diff
(99.7 %id)
CB054731.
matches multiple genes
brain, glioblastoma (pooled) .e 2452 to 2946 546 to 52     also hits gene CEP170L 495/551
(89 %)
0 diff
(100 %id)
AI422181 brain, glioblastoma (pooled) .e 2474 to 2940 469 to 3       467/469
(99 %)
0 diff
(100 %id)
AI570189 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 2474 to 2951 478 to 1   tiling clone,   478/478
(100 %)
0 diff
(100 %id)
AA668324   .e 2489 to 2951 465 to 3       463/468
(98 %)
0 diff
(100 %id)
BF095809 uterus_tumor .e 2516 to 2873 365 to 9       357/365
(97 %)
0 diff
(100 %id)
DB312695 thalamus .e 2517 to 2950 432 to 1       432/434
(99 %)
12 diff
(97.3 %id)
AA679771   .e 2528 to 2956 442 to 13       430/442
(97 %)
0 diff
(100 %id)
N67926 cochlea, ear .e 2530 to 2951 430 to 3       428/430
(99 %)
0 diff
(100 %id)
AI206153 pooled germ cell tumors .e 2533 to 2951 420 to 2       419/420
(99 %)
0 diff
(100 %id)
AW263958 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .e 2554 to 2951 402 to 5       398/402
(99 %)
0 diff
(100 %id)
N66882 cochlea, ear .e 2562 to 2951 401 to 5       397/485
(81 %)
0 diff
(100 %id)
AW965978   .e 2601 to 2950 8 to 357   AAA   350/357
(98 %)
6 diff
(98.4 %id)
AW965983   .e 2601 to 2950 8 to 357   AAA   350/357
(98 %)
6 diff
(98.4 %id)
AA363208 ovary .e 2603 to 2882 12 to 291       280/291
(96 %)
6 diff
(98.0 %id)
AI991734 adenocarcinoma, Pancreas .e 2636 to 2950 325 to 11   AAA   315/315
(100 %)
0 diff
(100 %id)
AA736890 Ewing's sarcoma .e 2647 to 2950 319 to 16   AAA   304/304
(100 %)
0 diff
(100 %id)
AA664554 alveolar rhabdomyosarcoma .e 2660 to 2950 8 to 298   AAA   291/298
(97 %)
6 diff
(98.0 %id)
AA640949 invasive tumor (cell line), Prostate .e 2674 to 2950 304 to 28   AAA   277/277
(100 %)
0 diff
(100 %id)
T66325.
matches multiple genes
whole brain .e 2684 to 2939 261 to 5     also hits gene CEP170L 257/261
(98 %)
0 diff
(100 %id)
CB410835 cochlea, ear .e 2702 to 2950 1 to 249   AAA   249/249
(100 %)
0 diff
(100 %id)
BE536589 cervix .e 2729 to 2950 1 to 222   AAA   222/222
(100 %)
0 diff
(100 %id)
AI784231 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 2801 to 2956 157 to 2       156/157
(99 %)
0 diff
(100 %id)
CD557928 testis .f 1 to 841 27 to 874   tiling clone,   848/903
(93 %)
21 diff
(97.7 %id)
DR003043 fetal brain .f 199 to 854 6 to 661       656/661
(99 %)
0 diff
(100 %id)
TI_1948074605.
matches multiple genes
  .f 250 to 1137 127 to 1015   tiling clone, fully sequenced, also hits gene CEP170L 889/1212
(73 %)
17 diff
(98.6 %id)
TI_1948074795.
matches multiple genes
  .f 250 to 1137 129 to 1015   tiling clone, fully sequenced, AAA also hits gene CEP170L 887/1221
(72 %)
24 diff
(98.1 %id)
TI_1948074979.
matches multiple genes
  .f 250 to 1121 128 to 1009   tiling clone, fully sequenced, AAA also hits gene CEP170L 882/1322
(66 %)
22 diff
(98.4 %id)
DA507916 brain .f 296 to 877 2 to 583   tiling clone, capped   582/583
(99 %)
1 diff
(99.9 %id)
DA102301 cerebellum .g 1 to 570 2 to 572   tiling clone, capped   571/571
(100 %)
2 diff
(99.7 %id)
BG057293 blood, lymphocyte .g 511 to 993 485 to 2   tiling clone,   484/485
(99 %)
1 diff
(99.8 %id)
DA798584 brain .h 1 to 548 2 to 550   tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
BF034570 adenocarcinoma, ovary .h 129 to 893 1 to 769   tiling clone,   766/769
(99 %)
34 diff
(95.6 %id)
CN307983 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 146 to 850 1 to 705   tiling clone,   705/705
(100 %)
0 diff
(100 %id)
DA119644 cerebellum .h 165 to 692 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
BI462376 testis .i 1 to 792 1 to 790 L143V T161N A162S S181R K182N ... tiling clone,   790/790
(100 %)
11 diff
(98.7 %id)
DB451494 testis .i 9 to 500 1 to 492   tiling clone,   492/492
(100 %)
3 diff
(99.4 %id)
DA498707 brain .j 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
BI438331 Pancreas, Purified pancreatic islet .j 543 to 1160 1 to 618   tiling clone,   618/618
(100 %)
1 diff
(99.9 %id)
DA382934 thalamus .k 1 to 637 2 to 638 exact tiling clone, capped   637/637
(100 %)
0 diff
(100 %id)
DA414606 thalamus .l 1 to 544 2 to 545   tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
AW853343 colon .l 356 to 897 1 to 542   tiling clone,   542/542
(100 %)
6 diff
(98.9 %id)
DA248984 brain .l 862 to 1447 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
AW503232 lymph .l 981 to 1405 1 to 425       425/425
(100 %)
4 diff
(99.1 %id)
DA335162 hippocampus .l 984 to 1578 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
TI_154159059   .l 984 to 1485 79 to 580       502/581
(86 %)
8 diff
(98.7 %id)
DA222923 brain .l 1034 to 1591 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
CN289340 embryonic stem cells, DMSO-treated H9 cellline .l 1177 to 1663 13 to 499       487/499
(97 %)
6 diff
(98.8 %id)
DA799085 brain .l 1228 to 1744 2 to 519   tiling clone, capped   518/518
(100 %)
1 diff
(99.9 %id)
AL161964 brain .l 1482 to 4453 1 to 2972 exact tiling clone, available from DKFZ, AAA   2972/2972
(100 %)
2 diff
(100.0 %id)
BG209645   .l 1580 to 1894 317 to 3     Submitted on the opposite strand 315/321
(98 %)
0 diff
(100 %id)
BG227961.
matches multiple genes
  .l 1598 to 1884 327 to 42   tiling clone, Submitted on the opposite strand, also hits gene karkleeby 286/343
(83 %)
0 diff
(100 %id)
DA790389 brain .l 1691 to 2223 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA732491   .l 1723 to 2418 2 to 700   capped   699/745
(93 %)
16 diff
(97.9 %id)
DB363998   .l 3603 to 3991 389 to 1       389/389
(100 %)
0 diff
(100 %id)
DA345817 substantia nigra .m 1 to 497 2 to 498 exact tiling clone, capped   497/497
(100 %)
1 diff
(99.8 %id)
DB075409 testis .n 1 to 571 2 to 572 Q84K tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DA118101 cerebellum .o 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
AA910376 carcinoid, lung .o 49 to 388 340 to 1       340/340
(100 %)
0 diff
(100 %id)
AK310003 skeletal muscle .o 482 to 1661 1 to 1180 exact tiling clone,   1180/1180
(100 %)
1 diff
(100.0 %id)
DA899136 skeletal muscle .o 483 to 1049 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DC369987   .p 1 to 562 1 to 562 exact tiling clone,   562/562
(100 %)
1 diff
(99.9 %id)
BI037019 nervous_tumor .q-u 1 to 369 369 to 4 S94V D95T K96G G97Y T98L ...     366/369
(99 %)
0 diff
(100 %id)
BE409201 choriocarcinoma, placenta .r 1 to 607 1 to 607 exact tiling clone,   607/607
(100 %)
0 diff
(100 %id)
BE276620 melanotic melanoma, skin .r 2 to 516 1 to 514 L24C L25*     514/514
(100 %)
2 diff
(99.7 %id)
BF124925 melanotic melanoma, skin .r 2 to 623 1 to 620 L24C L25* tiling clone,   620/638
(97 %)
24 diff
(96.3 %id)
BF125944 melanotic melanoma, skin .r 2 to 547 1 to 545 L24C L25*     545/545
(100 %)
2 diff
(99.7 %id)
DC377636 brain .s 1 to 554 6 to 559   tiling clone,   559/559
(100 %)
0 diff
(100 %id)
DC350960 brain .s 14 to 595 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC351030 brain .s 132 to 615 1 to 484       484/494
(97 %)
2 diff
(99.6 %id)
DC352019 brain .s 132 to 692 1 to 562 exact tiling clone,   562/562
(100 %)
1 diff
(99.9 %id)
CN307978 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .s 140 to 603 1 to 464       464/464
(100 %)
6 diff
(98.8 %id)
DC355391   .s 141 to 534 1 to 394       394/577
(68 %)
1 diff
(99.9 %id)
BP229477 brain .t 1 to 572 3 to 574   tiling clone,   574/581
(98 %)
7 diff
(98.8 %id)
DA510584 brain .t 1 to 582 2 to 583   tiling clone, capped   582/582
(100 %)
1 diff
(99.9 %id)
Z21827   .t 554 to 934 1 to 375   tiling clone,   375/420
(89 %)
12 diff
(97.2 %id)
AA383758.
matches multiple genes
testis .u 1 to 350 1 to 351 I47X D91R T92H R93* tiling clone, also hits gene CEP170L 351/351
(100 %)
2 diff
(99.5 %id)
BP364097 lung .va 1 to 593 1 to 594 E107X E108R A109S L110S K111* tiling clone,   594/598
(99 %)
5 diff
(99.2 %id)
AW382900 head_neck .vb 1 to 208 1 to 208 A2V Q9K A10L V11L V12C ... tiling clone,   208/210
(99 %)
14 diff
(93.4 %id)
AL700693 human skeletal muscle .vc 1 to 666 1 to 668       668/668
(100 %)
42 diff
(93.8 %id)
AL699873 human skeletal muscle .vc 1 to 666 1 to 668   tiling clone,   668/668
(100 %)
42 diff
(93.8 %id)
AI015396   .vc 652 to 1071 422 to 3   tiling clone,   420/422
(99 %)
0 diff
(100 %id)
BP229883 brain .vd 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BF362404 nervous_normal .ve-u 1 to 521 1 to 521 exact tiling clone,   521/521
(100 %)
0 diff
(100 %id)
TI_1968234335.
matches multiple genes
  L.a 120 to 1037 945 to 23   tiling clone, also hits gene CEP170L 923/1353
(68 %)
0 diff
(100 %id)
TI_1968234375.
matches multiple genes
  L.a 418 to 1508 1103 to 22   tiling clone, also hits gene CEP170L 1082/1253
(86 %)
0 diff
(100 %id)
BM676350.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid L.a 636 to 1248 614 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, also hits gene CEP170L 612/614
(99 %)
0 diff
(100 %id)
BE079749.
matches multiple genes
breast L.a 666 to 1035 1 to 371     also hits gene CEP170L 371/375
(98 %)
8 diff
(97.9 %id)
BE079733.
matches multiple genes
breast L.a 670 to 1035 16 to 382     also hits gene CEP170L 367/386
(95 %)
6 diff
(98.5 %id)
AW157594.
matches multiple genes
brain, frontal lobe L.a 684 to 1236 554 to 2     also hits gene CEP170L 553/563
(98 %)
0 diff
(100 %id)
BF436065.
matches multiple genes
pooled L.a 684 to 1235 551 to 1     also hits gene CEP170L 551/551
(100 %)
3 diff
(99.5 %id)
CF130036.
matches multiple genes
Chondrosarcoma Lung Metastasis cell lines, lung L.a 696 to 1254 1 to 559   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, also hits gene CEP170L 559/567
(98 %)
3 diff
(99.5 %id)
BF993307.
matches multiple genes
placenta_normal L.a 847 to 1118 23 to 292     also hits gene CEP170L 270/305
(88 %)
9 diff
(97.1 %id)
BY995500.
matches multiple genes
  L.a 849 to 1566 10 to 727   tiling clone, also hits gene CEP170L 718/727
(98 %)
6 diff
(99.2 %id)
BF436202.
matches multiple genes
pooled L.a 870 to 1235 366 to 1     also hits gene CEP170L 366/366
(100 %)
9 diff
(97.6 %id)
BF989520.
matches multiple genes
placenta_normal L.a 1062 to 1414 393 to 40     also hits gene CEP170L 354/393
(90 %)
0 diff
(100 %id)
DB028057.
matches multiple genes
testis L.a 1467 to 2005 2 to 540   tiling clone, capped also hits gene CEP170L 539/539
(100 %)
2 diff
(99.7 %id)
DA793300.
matches multiple genes
brain L.a 1969 to 2499 2 to 532   tiling clone, capped also hits gene CEP170L 531/531
(100 %)
2 diff
(99.7 %id)
DA749521.
matches multiple genes
  L.a 1970 to 2545 2 to 578   tiling clone, capped also hits gene CEP170L 577/577
(100 %)
2 diff
(99.7 %id)
TI_1948074605.
matches multiple genes
  L.c 75 to 962 127 to 1015 N266M A267L E268N S269L E270R ... tiling clone, fully sequenced, also hits gene CEP170L 889/1015
(87 %)
17 diff
(98.4 %id)
TI_1948074795.
matches multiple genes
  L.c 75 to 962 129 to 1015 N278I V280A D283E E285K E286R ... tiling clone, fully sequenced, AAA also hits gene CEP170L 887/1015
(87 %)
24 diff
(97.7 %id)
TI_1948074979.
matches multiple genes
  L.c 75 to 951 128 to 1014   tiling clone, fully sequenced, AAA also hits gene CEP170L 887/1014
(87 %)
28 diff
(97.3 %id)
D81444.
matches multiple genes
brain L.c 310 to 561 1 to 252     also hits gene CEP170L 252/252
(100 %)
0 diff
(100 %id)
TI_1948074606.
matches multiple genes
  L.c 490 to 962 594 to 122   fully sequenced, also hits gene CEP170L 473/594
(79 %)
0 diff
(100 %id)
TI_1948074796.
matches multiple genes
  L.c 490 to 962 589 to 117   fully sequenced, also hits gene CEP170L 473/589
(80 %)
0 diff
(100 %id)
TI_1948074980.
matches multiple genes
  L.c 490 to 962 593 to 120   fully sequenced, also hits gene CEP170L 474/593
(79 %)
2 diff
(99.7 %id)
BQ354981.
matches multiple genes
head_neck L.c 937 to 1540 10 to 610   tiling clone, also hits gene CEP170L 601/610
(98 %)
7 diff
(98.9 %id)
N54112.
matches multiple genes
multiple sclerosis lesions L.c 1053 to 1117 1 to 65   tiling clone, fully sequenced, also hits gene CEP170L 65/65
(100 %)
0 diff
(100 %id)
AW969861.
matches multiple genes
  L.c 1254 to 1511 114 to 371   tiling clone, also hits gene CEP170L 258/468
(55 %)
6 diff
(98.8 %id)
T66398.
matches multiple genes
whole brain L.c 1316 to 1497 1 to 191     also hits gene CEP170L 191/201
(95 %)
6 diff
(97.1 %id)
BF352220.
matches multiple genes
head_neck L.c 1347 to 1443 1 to 98     also hits gene CEP170L 98/102
(96 %)
7 diff
(93.2 %id)
EH336976.
matches multiple genes
  L.c 1440 to 1502 1 to 63     also hits gene CEP170L 63/64
(98 %)
1 diff
(98.5 %id)
BM695924.
matches multiple genes
eye, human retina L.c 1588 to 2153 1 to 567   tiling clone, also hits gene CEP170L 567/567
(100 %)
8 diff
(98.6 %id)
GD145957.
matches multiple genes
  L.c 1741 to 1852 112 to 1     Submitted on the opposite strand, also hits gene CEP170L 112/114
(98 %)
4 diff
(96.5 %id)
W05617.
matches multiple genes
lung L.c 1943 to 2186 5 to 247     also hits gene CEP170L 243/247
(98 %)
6 diff
(97.6 %id)
AA411288.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus L.c 2035 to 2471 1 to 434   tiling clone, also hits gene CEP170L 434/434
(100 %)
11 diff
(97.5 %id)
CB054732.
matches multiple genes
brain, glioblastoma (pooled) L.c 2291 to 2746 3 to 460   tiling clone, also hits gene CEP170L 458/460
(99 %)
17 diff
(96.4 %id)
BF931710.
matches multiple genes
nervous_tumor L.g 168 to 542 8 to 382     also hits gene CEP170L 375/382
(98 %)
8 diff
(98.0 %id)
AA383758.
matches multiple genes
testis L.h 1 to 350 1 to 351 I47X D91R T92H R93* tiling clone, also hits gene CEP170L 351/351
(100 %)
1 diff
(99.8 %id)
AA812955.
matches multiple genes
  L.j 1 to 339 344 to 5 A3L M4* tiling clone, also hits gene CEP170L 339/344
(98 %)
1 diff
(99.8 %id)
AK296812 tongue, tumor tissue Gene CEP170, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK299552 brain Gene CEP170, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
DB298824 cerebellum Gene CEP170, variant not shown              
DA097544 cerebellum Gene CEP170, variant not shown       capped      
DB304852 brain Gene CEP170, variant not shown              
DA218483 brain Gene CEP170, variant not shown       capped      
DB306984 caudate nucleus Gene CEP170, variant not shown              
DA270322 caudate nucleus Gene CEP170, variant not shown       capped      
CR748019 pooled Gene CEP170, variant not shown              
DC346440 tongue, tumor tissue Gene CEP170, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AV714727   Gene CEP170, variant not shown         Suspected internal deletion, this clone was ignored    
AL700288 human skeletal muscle Gene CEP170, variant not shown              
BX954848   Gene CEP170, variant not shown              
DC351573 brain Gene CEP170, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AV731644 hypothalamus Gene CEP170, variant not shown         Suspected internal deletion, this clone was ignored    
AV732409 hypothalamus Gene CEP170, variant not shown         Suspected internal deletion, this clone was ignored    
AA548171 adrenal adenoma, adrenal gland Gene CEP170, variant not shown         Submitted on the opposite strand    
AI026707   Gene CEP170, variant not shown         Suspected internal deletion, this clone was ignored    
BP283807 bone marrow Gene CEP170, variant not shown         Suspected internal deletion, this clone was ignored    
DA785432 brain Gene CEP170, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB233326 trachea Gene CEP170, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI