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Gene ITGA9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
161 supporting clones for gene ITGA9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA225721 brain .a 1 to 498 35 to 532   capped   498/531
(93 %)
1 diff
(99.9 %id)
CV029451 mixed .a 1 to 392 182 to 573       392/573
(68 %)
0 diff
(100 %id)
L24158 intestine, lung .a 1 to 3063 77 to 3139 G446E tiling clone,   3063/3139
(97 %)
2 diff
(100.0 %id)
NM_002207.2   .a 1 to 3728 235 to 3962 exact RefSeq,   3728/3962
(94 %)
0 diff
(100 %id)
TI_1948139806   .a 1 to 428 308 to 735       428/1324
(32 %)
11 diff
(99.2 %id)
DR007239 testis .a 1 to 489 205 to 693       489/693
(70 %)
0 diff
(100 %id)
DA958508 Spleen .a 465 to 1019 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
BF592484 breast, lobullar carcinoma in situ .a 719 to 854 1 to 136     Submitted on the opposite strand 136/136
(100 %)
3 diff
(97.8 %id)
BE243399 leukopheresis .a 867 to 1014 1 to 148       148/148
(100 %)
6 diff
(96.0 %id)
AL710480 human skeletal muscle .a 891 to 1338 1 to 448   tiling clone,   448/450
(99 %)
6 diff
(98.7 %id)
AL710602 human skeletal muscle .a 1006 to 1476 1 to 471       471/471
(100 %)
2 diff
(99.6 %id)
BX646502   .a 1038 to 1529 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
BF905522 marrow .a 1077 to 1317 240 to 3     Submitted on the opposite strand 238/240
(99 %)
0 diff
(100 %id)
BQ359518 head_normal .a 1145 to 1267 5 to 126       122/126
(96 %)
1 diff
(99.3 %id)
AL603227 human skeletal muscle .a 1437 to 2031 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
AI033580 liver and spleen .a 1563 to 2091 529 to 1       529/529
(100 %)
17 diff
(96.8 %id)
BX481081   .a 1590 to 2047 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
BE157483 head_neck .a 1909 to 2413 539 to 35     Submitted on the opposite strand 505/539
(93 %)
2 diff
(99.7 %id)
AL708071 human skeletal muscle .a 2004 to 2554 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
BF377503 testis_normal .a 2187 to 2643 458 to 2       457/458
(99 %)
4 diff
(99.2 %id)
TI_154048673   .a 2486 to 3326 920 to 89   AAA   832/997
(83 %)
12 diff
(98.8 %id)
BQ574863 Chondrosarcoma Grade II, Left Pelvis .a 2605 to 3326 738 to 19   AAA   720/723
(99 %)
2 diff
(99.8 %id)
AW272761 colon, moderately-differentiated adenocarcinoma .a 2643 to 3264 625 to 4       622/625
(99 %)
4 diff
(99.4 %id)
AW274679 pooled .a 2715 to 3323 611 to 2       610/668
(91 %)
10 diff
(98.6 %id)
CA413405 Knee, Osteoarthritic Cartilage .a 2725 to 3326 619 to 19   AAA   601/601
(100 %)
1 diff
(99.9 %id)
AA922648 pooled germ cell tumors .a 2757 to 3274 518 to 1       518/518
(100 %)
0 diff
(100 %id)
BF195522 fibrotheoma, ovary .a 2769 to 3320 556 to 5       552/556
(99 %)
1 diff
(99.9 %id)
BX647350 Liver .a 2771 to 7450 1 to 4680   tiling clone, available from DKFZ, AAA   4680/4680
(100 %)
5 diff
(99.9 %id)
BX099617 heart .a 2792 to 3322 1 to 531   AAA   531/531
(100 %)
1 diff
(99.9 %id)
AA972710 pooled .a 2826 to 3328 504 to 2       503/504
(99 %)
0 diff
(100 %id)
AI800718 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2827 to 3323 497 to 2       496/498
(99 %)
0 diff
(100 %id)
AI092330 heart .a 2847 to 3323 478 to 2       477/478
(99 %)
0 diff
(100 %id)
BX492405   .a 2856 to 3348 9 to 500       492/500
(98 %)
6 diff
(98.8 %id)
AW242314 Kidney .a 2874 to 3322 450 to 1       450/450
(100 %)
9 diff
(98.0 %id)
AW592909 pooled .a 2907 to 3322 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
AI620768 Prostate .a 2908 to 3326 420 to 1       420/420
(100 %)
2 diff
(99.6 %id)
DB508206 testis .a 2916 to 3324 1 to 411     Submitted on the opposite strand 411/413
(99 %)
8 diff
(98.1 %id)
AI279388 borderline ovarian carcinoma, ovary .a 2965 to 3322 372 to 15   AAA   358/358
(100 %)
0 diff
(100 %id)
DA393874 thalamus .a 3002 to 3588 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB230404 trachea .a 3003 to 3584 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AV654006 corresponding non cancerous liver tissue .a 3008 to 3322 1 to 315   AAA Submitted on the opposite strand 315/315
(100 %)
0 diff
(100 %id)
AA865557 pooled germ cell tumors .a 3078 to 3326 249 to 1       249/249
(100 %)
1 diff
(99.6 %id)
BF970989 adrenal cortex carcinoma, cell line, adrenal gland .a 3136 to 3850 1 to 722       722/842
(85 %)
20 diff
(97.7 %id)
AA909202 pooled .a 3214 to 3650 439 to 3       437/439
(99 %)
0 diff
(100 %id)
DB287373 uterus .a 3294 to 3849 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB060657 testis .a 3310 to 3894 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB070257 testis .a 3341 to 3888 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BX478742   .a 3370 to 3728 1 to 359       359/359
(100 %)
0 diff
(100 %id)
DB283022 uterus .a 3381 to 3928 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
AK123884 brain .a 3396 to 6257 1 to 2862   tiling clone, available from FLJ,   2862/2862
(100 %)
4 diff
(99.9 %id)
DA787334 brain .a 3397 to 3984 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA340638 hippocampus .a 3444 to 4023 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB275766 uterus .a 3460 to 3996 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB280229 uterus .a 3492 to 4045 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB284604 uterus .a 3544 to 4086 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
AL599759   .a 3586 to 3883 1 to 298       298/298
(100 %)
7 diff
(97.7 %id)
DB292085 uterus .a 3601 to 4150 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB066936 testis .a 3603 to 4174 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA222909 brain .a 3607 to 4163 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA860067 placenta .a 3608 to 4167 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA316083 hippocampus .a 3804 to 4331 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
CV406068 marrow .a 3813 to 4085 1 to 274       274/274
(100 %)
18 diff
(93.5 %id)
DA862265 placenta .a 3888 to 4410 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DB278896 uterus .a 3902 to 4460 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
DA245402 brain .a 3935 to 4522 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA834200 placenta .a 3950 to 4838 2 to 897   capped   896/899
(99 %)
17 diff
(98.2 %id)
DA190150 amygdala .a 4113 to 4691 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB098543 testis .a 4165 to 4739 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BF887095 testis_normal .a 4215 to 4701 495 to 15     Submitted on the opposite strand 481/502
(95 %)
0 diff
(100 %id)
DA989369 synovial membrane tissue from rheumatioidarthritis .a 4272 to 4849 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
BF767517 colon_normal .a 4326 to 4600 337 to 62     Submitted on the opposite strand 276/337
(81 %)
0 diff
(100 %id)
DA122587 cerebellum .a 4328 to 4860 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB236299 trachea .a 4332 to 4897 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CV379268 head_neck .a 4348 to 4693 1 to 347       347/347
(100 %)
12 diff
(96.6 %id)
BF960432 nervous_normal .a 4350 to 4739 1 to 390       390/390
(100 %)
9 diff
(97.7 %id)
CV391291 nervous_normal .a 4354 to 4824 491 to 21     Submitted on the opposite strand 471/497
(94 %)
0 diff
(100 %id)
CV392067 nervous_normal .a 4354 to 4821 9 to 481       473/481
(98 %)
6 diff
(98.8 %id)
BF959890 nervous_normal .a 4356 to 4821 9 to 474       466/474
(98 %)
6 diff
(98.8 %id)
BF960687 nervous_normal .a 4361 to 4821 1 to 461       461/461
(100 %)
4 diff
(99.2 %id)
BF960867 nervous_normal .a 4361 to 4547 184 to 1       184/184
(100 %)
1 diff
(99.5 %id)
BI033881 nervous_normal .a 4361 to 4816 459 to 4       456/459
(99 %)
0 diff
(100 %id)
DA792238 brain .a 4363 to 4939 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DA404475 thalamus .a 4378 to 4968 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
CV391694 nervous_normal .a 4393 to 4669 43 to 320       278/320
(86 %)
6 diff
(98.2 %id)
BF767987 colon_normal .a 4428 to 4600 187 to 14     Submitted on the opposite strand 174/187
(93 %)
0 diff
(100 %id)
DB259486 uterus .a 4441 to 5007 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
CV375177 marrow .a 4509 to 4827 1 to 319       319/327
(97 %)
6 diff
(98.2 %id)
BI035421 nervous_normal .a 4539 to 4821 1 to 283       283/283
(100 %)
2 diff
(99.3 %id)
CV321464 placenta_normal .a 4546 to 4902 14 to 369       356/369
(96 %)
6 diff
(98.4 %id)
BF960968 nervous_normal .a 4671 to 4808 141 to 4       138/141
(97 %)
0 diff
(100 %id)
BF887173 testis_normal .a 4716 to 5104 1 to 390       390/390
(100 %)
5 diff
(98.8 %id)
DA367064 subthalamic nucleus .a 4753 to 5319 2 to 568   capped   567/568
(99 %)
6 diff
(99.0 %id)
DB032093 testis .a 4905 to 5466 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
AK026826 Human lung .a 4973 to 7448 1 to 2476   available from FLJ, AAA   2476/2476
(100 %)
2 diff
(100.0 %id)
DA397924 thalamus .a 5019 to 5583 2 to 566   tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
Z45898 brain, total brain .a 5360 to 5688 1 to 329       329/329
(100 %)
0 diff
(100 %id)
DB255526 uterus .a 5421 to 6002 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DB270619 uterus .a 5423 to 5997 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
AW953271   .a 5439 to 5993 11 to 565       555/565
(98 %)
6 diff
(99.0 %id)
T33487 brain .a 5439 to 5909 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
CB153346 brain .a 5444 to 5982 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
CD243463 testis .a 5553 to 6291 1 to 750   tiling clone,   750/928
(80 %)
18 diff
(98.1 %id)
CD692166 normal nasopharynx .a 5597 to 5980 1 to 384       384/384
(100 %)
0 diff
(100 %id)
DA563325 heart .a 5662 to 6217 2 to 559   capped   558/558
(100 %)
6 diff
(99.0 %id)
DB326457 brain .a 5717 to 6257 542 to 1       542/542
(100 %)
3 diff
(99.5 %id)
F11449 brain, total brain .a 5749 to 6096 1 to 348       348/348
(100 %)
0 diff
(100 %id)
DB263144 uterus .a 5753 to 6215 2 to 468   capped   467/467
(100 %)
4 diff
(99.2 %id)
W87860 liver and spleen .a 5877 to 6502 1 to 622       622/624
(99 %)
12 diff
(98.1 %id)
BQ366292 placenta_normal .a 5918 to 6408 518 to 29       490/636
(77 %)
0 diff
(100 %id)
R00119 liver and spleen .a 5927 to 6314 1 to 398       398/400
(99 %)
12 diff
(97.0 %id)
FN063044 breast carcinoma .a 6102 to 6213 106 to 1     Submitted on the opposite strand 106/106
(100 %)
5 diff
(95.3 %id)
BF969022 adrenal cortex carcinoma, cell line, adrenal gland .a 6175 to 6946 1 to 768       768/780
(98 %)
10 diff
(98.8 %id)
BF968873 adrenal cortex carcinoma, cell line, adrenal gland .a 6176 to 6961 1 to 788       788/909
(86 %)
15 diff
(98.4 %id)
BF359598 marrow .a 6450 to 6839 1 to 395       395/395
(100 %)
18 diff
(95.5 %id)
BM700418 eye, lens .a 6512 to 7006 1 to 495   fully sequenced,   495/495
(100 %)
0 diff
(100 %id)
T51779 fetal spleen, Spleen .a 6576 to 6836 1 to 267       267/281
(95 %)
13 diff
(95.4 %id)
TI_149287021   .a 6581 to 7443 933 to 79   AAA   855/1080
(79 %)
14 diff
(98.8 %id)
BX399556 Placenta Cot 25-normalized .a 6585 to 7416 836 to 4       833/836
(99 %)
0 diff
(100 %id)
CN265319 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6606 to 6984 17 to 395       379/395
(95 %)
6 diff
(98.5 %id)
BI862820 breast, mammary adenocarcinoma, cell line .a 6653 to 7364 39 to 757       719/870
(82 %)
6 diff
(99.4 %id)
TI_57192006   .a 6653 to 7364 39 to 757       719/870
(82 %)
6 diff
(99.4 %id)
AW385001 head_neck .a 6693 to 7122 18 to 447       430/447
(96 %)
6 diff
(98.7 %id)
BM972331 lung .a 6722 to 7443 736 to 15   AAA   722/722
(100 %)
0 diff
(100 %id)
BF839949 head_neck .a 6725 to 6984 265 to 5     Submitted on the opposite strand 261/265
(98 %)
0 diff
(100 %id)
BQ003513 Chondrosarcoma, Left Pelvis .a 6750 to 7443 708 to 15   AAA   694/694
(100 %)
0 diff
(100 %id)
AV734862 pheochromocytoma .a 6754 to 7405 1 to 643       643/643
(100 %)
8 diff
(98.8 %id)
BX373781 Placenta Cot 25-normalized .a 6755 to 7445 689 to 1       689/839
(82 %)
17 diff
(98.0 %id)
BF901915 marrow .a 6765 to 7150 1 to 386       386/386
(100 %)
1 diff
(99.8 %id)
BQ016263 lung, Metastatic Chondrosarcoma .a 6785 to 7443 673 to 15   AAA   659/659
(100 %)
1 diff
(99.9 %id)
W87690 liver and spleen .a 6908 to 7439 542 to 2       541/542
(99 %)
0 diff
(100 %id)
AI479176 Kidney .a 6929 to 7443 515 to 1       515/515
(100 %)
1 diff
(99.9 %id)
AI949812 2 pooled tumors (clear cell type), Kidney .a 6933 to 7443 525 to 15   AAA   511/511
(100 %)
2 diff
(99.7 %id)
W25712 lung .a 6950 to 7170 1 to 221       221/223
(99 %)
3 diff
(98.7 %id)
BP418546 small intestine .a 6962 to 7445 1 to 480     Submitted on the opposite strand 480/482
(99 %)
6 diff
(98.8 %id)
BM670533 eye, lens .a 6976 to 7444 487 to 19   fully sequenced, AAA   469/469
(100 %)
1 diff
(99.8 %id)
AI242185 liver and spleen .a 6981 to 7445 467 to 3       465/467
(99 %)
0 diff
(100 %id)
BQ029501 lung, Metastatic Chondrosarcoma .a 7000 to 7443 462 to 19   AAA   444/444
(100 %)
1 diff
(99.8 %id)
AI127897 uterus .a 7007 to 7445 444 to 6       439/444
(98 %)
0 diff
(100 %id)
AW241950 pooled .a 7007 to 7443 461 to 27   AAA   435/435
(100 %)
18 diff
(95.9 %id)
AI127291 heart .a 7009 to 7445 443 to 7       437/443
(98 %)
0 diff
(100 %id)
R00026 liver and spleen .a 7016 to 7425 414 to 1       414/414
(100 %)
9 diff
(97.9 %id)
AI094384 heart .a 7016 to 7445 435 to 6       430/435
(98 %)
0 diff
(100 %id)
AI446147 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7018 to 7445 434 to 7       428/434
(98 %)
0 diff
(100 %id)
BX095422 heart .a 7022 to 7303 1 to 282       282/282
(100 %)
2 diff
(99.3 %id)
AA039668 heart .a 7022 to 7183 1 to 163   fully sequenced,   163/163
(100 %)
0 diff
(100 %id)
AA598975   .a 7046 to 7445 403 to 4       400/403
(99 %)
0 diff
(100 %id)
BI018184 marrow .a 7068 to 7255 188 to 1       188/188
(100 %)
0 diff
(100 %id)
AI084810 liver and spleen .a 7069 to 7439 371 to 1       371/371
(100 %)
0 diff
(100 %id)
AI143386 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 7084 to 7439 356 to 1       356/356
(100 %)
0 diff
(100 %id)
T51624 fetal spleen, Spleen .a 7116 to 7446 337 to 1       337/376
(89 %)
7 diff
(98.2 %id)
T33486 brain .a 7116 to 7443 328 to 1       328/339
(96 %)
0 diff
(100 %id)
AA470694 colon .a 7124 to 7445 325 to 4       322/325
(99 %)
0 diff
(100 %id)
F09111 brain, total brain .a 7127 to 7443 317 to 1       317/317
(100 %)
0 diff
(100 %id)
Z41525 brain, total brain .a 7130 to 7363 234 to 1       234/234
(100 %)
1 diff
(99.6 %id)
AI198903   .a 7142 to 7445 305 to 2       304/305
(99 %)
0 diff
(100 %id)
AA039686 heart .a 7153 to 7443 295 to 1   fully sequenced,   295/295
(100 %)
0 diff
(100 %id)
AI240721 liver and spleen .a 7180 to 7443 290 to 27   AAA   264/264
(100 %)
8 diff
(97.0 %id)
FN066913 breast carcinoma .a 7198 to 7295 98 to 1     Submitted on the opposite strand 98/98
(100 %)
1 diff
(99.0 %id)
AI493232 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7294 to 7439 182 to 37       146/182
(80 %)
0 diff
(100 %id)
BU934780 mixed (pool of 40 RNAs) .a 7315 to 7710 1 to 404   tiling clone,   404/784
(51 %)
12 diff
(98.5 %id)
BC030198 Brain, adult, 6 pooled whole brains .b 1 to 1840 442 to 2281 G446E tiling clone, available from MGC, AAA   1840/2281
(80 %)
1 diff
(100.0 %id)
TI_1948139807   .b 885 to 1717 962 to 124       839/1205
(69 %)
21 diff
(98.3 %id)
AA613179 pheochromocytoma .c-u 1 to 458 458 to 1 exact tiling clone,   458/458
(100 %)
0 diff
(100 %id)
AA581803 germ cell tumor .e-u 1 to 456 457 to 2 exact tiling clone,   456/457
(99 %)
0 diff
(100 %id)
AV709339 adrenal gland Gene ITGA9, variant not shown         Suspected internal deletion, this clone was ignored    
BG993851 head_neck Gene ITGA9, variant not shown              
D25303 lung Gene ITGA9, variant not shown         Suspected internal deletion, this clone was ignored    
T95090 liver and spleen Gene ITGA9, variant not shown         This clone was ignored    
T95187 liver and spleen Gene ITGA9, variant not shown         This clone was ignored    
BM679615 eye, fetal eye Gene ITGA9, variant not shown       AAA This clone was ignored    
BM721195 eye, fetal eye Gene ITGA9, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI