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Gene ITGA11TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
143 supporting clones for gene ITGA11 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC422330 uterus .a 1 to 338 1 to 338   tiling clone,   338/338
(100 %)
2 diff
(99.5 %id)
DC363135   .a 200 to 752 1 to 553       553/553
(100 %)
0 diff
(100 %id)
DC423056 uterus .a 248 to 791 1 to 544       544/544
(100 %)
0 diff
(100 %id)
AK292445 testis .a 249 to 4203 1 to 3955 N420S L524R F577S D713N E1121D tiling clone,   3955/3955
(100 %)
8 diff
(99.8 %id)
DA421837 cervix .a 249 to 693 2 to 446   capped   445/445
(100 %)
0 diff
(100 %id)
DA660428   .a 249 to 774 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DB069473 testis .a 250 to 796 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA648011   .a 254 to 783 2 to 532   capped   531/531
(100 %)
3 diff
(99.5 %id)
NM_001004439.1   .a 258 to 5258 1 to 5001   RefSeq, AAA   5001/5001
(100 %)
0 diff
(100 %id)
AF137378   .a 264 to 4239 9 to 3983 L524R P972L tiling clone,   3975/3975
(100 %)
10 diff
(99.8 %id)
ES312630 beard hair, skin .a 274 to 386 1 to 111       111/115
(96 %)
4 diff
(96.6 %id)
CN358988 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 277 to 880 1 to 604       604/604
(100 %)
0 diff
(100 %id)
CN358983 embryonic stem cells, cell lines H1, H7, andH9 .a 280 to 587 1 to 307       307/307
(100 %)
1 diff
(99.7 %id)
DR007238 testis .a 391 to 890 1 to 501       502/501
(100 %)
5 diff
(99.1 %id)
BX476418   .a 528 to 1059 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
Z50167   .a 552 to 895 1 to 345       345/346
(99 %)
5 diff
(98.6 %id)
AI825217 pooled germ cell tumors .a 756 to 1095 341 to 1       341/341
(100 %)
1 diff
(99.8 %id)
AW604115 colon .a 849 to 1211 1 to 363       363/363
(100 %)
4 diff
(98.9 %id)
CN358991 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 942 to 1517 14 to 590       581/590
(98 %)
7 diff
(98.9 %id)
BG998371 head_neck .a 959 to 1214 1 to 253       253/266
(95 %)
10 diff
(96.3 %id)
BG998850 head_neck .a 1055 to 1214 1 to 160       160/173
(92 %)
2 diff
(98.9 %id)
BG013602 placenta_normal .a 1081 to 1283 346 to 144       203/346
(58 %)
0 diff
(100 %id)
BX496541 Liver .a 1269 to 1862 1 to 594   tiling clone,   594/594
(100 %)
0 diff
(100 %id)
DA234166 brain .a 1289 to 1863 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA034080   .a 1298 to 1832 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
CN358987 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1300 to 2044 1 to 745       745/745
(100 %)
4 diff
(99.5 %id)
CN358993 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1421 to 2086 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
CN358990 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1474 to 2028 21 to 576       556/576
(96 %)
8 diff
(98.7 %id)
CN358985 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1478 to 2054 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
Z50157   .a 1739 to 1973 1 to 233       233/233
(100 %)
4 diff
(98.3 %id)
CN358994 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1769 to 2429 1 to 660   tiling clone,   660/660
(100 %)
1 diff
(99.9 %id)
AW851445 colon .a 1840 to 2301 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
BX505719   .a 1893 to 2500 1 to 609       609/609
(100 %)
4 diff
(99.4 %id)
CD624324   .a 1924 to 2340 1 to 418       418/418
(100 %)
6 diff
(98.6 %id)
CD624325   .a 1926 to 2572 651 to 1       651/667
(97 %)
5 diff
(99.3 %id)
DA661339   .a 2156 to 2718 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CD624320   .a 2161 to 2576 18 to 433       416/436
(95 %)
10 diff
(97.8 %id)
CD624321   .a 2161 to 2576 419 to 3       417/437
(95 %)
7 diff
(98.4 %id)
CD624322   .a 2161 to 2580 16 to 434       421/435
(96 %)
12 diff
(97.3 %id)
CD624323   .a 2161 to 2580 420 to 2       419/436
(96 %)
6 diff
(98.7 %id)
BF770976 epid_tumor .a 2265 to 2571 307 to 1     Submitted on the opposite strand 307/307
(100 %)
1 diff
(99.7 %id)
BF770980 epid_tumor .a 2265 to 2571 307 to 1     Submitted on the opposite strand 307/307
(100 %)
0 diff
(100 %id)
CN358989 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2299 to 2966 1 to 668   tiling clone,   668/668
(100 %)
0 diff
(100 %id)
AU279497   .a 2300 to 2814 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
BF770978 epid_tumor .a 2304 to 2571 268 to 1     Submitted on the opposite strand 268/268
(100 %)
0 diff
(100 %id)
DA026349   .a 2310 to 2875 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BF770979 epid_tumor .a 2312 to 2571 260 to 1     Submitted on the opposite strand 260/260
(100 %)
2 diff
(99.3 %id)
DA443413 tongue, tumor tissue .a 2439 to 3031 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DB207143 trachea .a 2455 to 3040 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
AW888738 nervous_tumor .a 2552 to 2790 35 to 273       241/277
(87 %)
12 diff
(95.7 %id)
BP372195 umbilical cord .a 2573 to 3056 96 to 579       484/582
(83 %)
14 diff
(97.6 %id)
AW339880 adenocarcinoma, Pancreas .a 2577 to 3004 484 to 57       428/485
(88 %)
16 diff
(96.8 %id)
BF770962 epid_tumor .a 2589 to 2764 181 to 6     Submitted on the opposite strand 176/181
(97 %)
0 diff
(100 %id)
BF770975 epid_tumor .a 2589 to 2764 219 to 44     Submitted on the opposite strand 176/219
(80 %)
0 diff
(100 %id)
BF769640 epid_tumor .a 2593 to 2768 175 to 1     Submitted on the opposite strand 175/175
(100 %)
9 diff
(94.9 %id)
DA940042 Spleen .a 2636 to 3215 2 to 582   capped   581/581
(100 %)
4 diff
(99.4 %id)
BF965934 Bone, osteosarcoma, cell line .a 2666 to 3431 1 to 769       769/869
(88 %)
18 diff
(98.0 %id)
BF358074 leiomios .a 2809 to 3432 637 to 15       623/637
(97 %)
3 diff
(99.6 %id)
CN358984 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2845 to 3374 13 to 542       530/542
(97 %)
6 diff
(98.9 %id)
AA852615 Bone, Hip .a 2888 to 3192 1 to 304       304/304
(100 %)
7 diff
(97.7 %id)
BF365293 nervous_tumor .a 2969 to 3235 1 to 269       269/269
(100 %)
6 diff
(97.8 %id)
CN358986 embryonic stem cells, cell lines H1, H7, andH9 .a 3018 to 3608 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
ES314599 occipital scalp hair, skin .a 3099 to 3219 1 to 118       118/118
(100 %)
7 diff
(94.1 %id)
AW753022 colon .a 3137 to 3756 5 to 634       640/634
(100 %)
57 diff
(91.1 %id)
CN358992 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3150 to 3719 9 to 578       570/578
(98 %)
6 diff
(99.0 %id)
BF328395 breast_normal .a 3153 to 3382 1 to 229       229/237
(96 %)
3 diff
(98.8 %id)
AI751442 Bone, Hip .a 3180 to 3626 1 to 447       447/447
(100 %)
5 diff
(98.9 %id)
BF830392 leiomios .a 3184 to 3363 1 to 175       175/175
(100 %)
11 diff
(93.8 %id)
BF758396 colon .a 3194 to 3363 1 to 170       170/170
(100 %)
6 diff
(96.5 %id)
AL359064   .a 3202 to 5258 1 to 2061   tiling clone, AAA   2061/2061
(100 %)
2 diff
(100.0 %id)
W45078 senescent fibroblast .a 3202 to 3544 1 to 342       342/443
(77 %)
6 diff
(98.7 %id)
BF758424 colon .a 3205 to 3363 1 to 159       159/159
(100 %)
7 diff
(95.6 %id)
CN482769 eye .a 3282 to 3725 1 to 444       444/601
(73 %)
0 diff
(100 %id)
BG939231 Bone, Hip .a 3362 to 3968 1 to 607       607/607
(100 %)
6 diff
(99.1 %id)
U53091   .a 3375 to 3709 1 to 338       338/343
(98 %)
9 diff
(97.4 %id)
DA032679   .a 3403 to 3992 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
CF272349 Brain glioblastoma .a 3464 to 4312 1 to 857       857/898
(95 %)
15 diff
(98.4 %id)
ES315535 occipital scalp hair, skin .a 3475 to 3601 1 to 125       125/125
(100 %)
2 diff
(98.4 %id)
AI752488 Bone, Hip .a 3518 to 3646 24 to 152       129/152
(84 %)
6 diff
(96.1 %id)
AW068275 Bone, Hip .a 3657 to 4023 1 to 367       367/367
(100 %)
5 diff
(98.7 %id)
AI621089 pooled germ cell tumors .a 3762 to 4238 476 to 1       476/476
(100 %)
6 diff
(98.8 %id)
BX119665 breast .a 3774 to 4514 1 to 741       741/741
(100 %)
2 diff
(99.8 %id)
TI_57215516   .a 3801 to 4637 19 to 854       836/854
(97 %)
17 diff
(98.1 %id)
BI755109 brain .a 3809 to 4637 1 to 828       828/828
(100 %)
12 diff
(98.6 %id)
BU175061 epidermoid carcinoma, cell line, salivary gland .a 3944 to 4587 27 to 671       645/969
(66 %)
19 diff
(98.1 %id)
BU163814 epidermoid carcinoma, cell line, salivary gland .a 3946 to 4825 1 to 884       884/886
(99 %)
16 diff
(98.2 %id)
BG945886 bladder_tumor .a 3963 to 4304 352 to 1       352/352
(100 %)
18 diff
(94.9 %id)
BG939230 Bone, Hip .a 3977 to 4519 637 to 95       543/637
(85 %)
0 diff
(100 %id)
BG939168 Bone, Hip .a 4118 to 4724 1 to 607       607/607
(100 %)
6 diff
(99.1 %id)
CB158653 Liver .a 4329 to 4801 1 to 473       473/473
(100 %)
0 diff
(100 %id)
BG938491 Bone, Hip .a 4398 to 4886 8 to 496       489/496
(98 %)
6 diff
(98.8 %id)
BQ668869 epidermoid carcinoma, cell line, salivary gland .a 4460 to 5202 12 to 766       755/973
(77 %)
30 diff
(97.0 %id)
BQ675019 epidermoid carcinoma, cell line, salivary gland .a 4462 to 5149 1 to 696       696/968
(71 %)
24 diff
(97.6 %id)
CA447531 Chondrosarcoma, Left Pelvis .a 4845 to 5017 191 to 19   AAA   173/179
(96 %)
1 diff
(99.5 %id)
BQ183136 Knee, Osteoarthritic Cartilage .a 4849 to 5025 195 to 19   AAA   177/177
(100 %)
3 diff
(98.4 %id)
BQ003687 Chondrosarcoma, Left Pelvis .a 4855 to 5264 422 to 13   tiling clone, AAA   410/410
(100 %)
0 diff
(100 %id)
BQ019559 Chondrosarcoma, Left Pubic Bone .a 4859 to 5025 185 to 19   AAA   167/170
(98 %)
0 diff
(100 %id)
BU630187 cell lines, Chondrosarcoma .a 4863 to 5019 173 to 17   AAA   157/157
(100 %)
0 diff
(100 %id)
W45174 senescent fibroblast .a 4865 to 5264 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AI752385 Bone, Hip .a 4883 to 5025 169 to 27   AAA   143/147
(97 %)
0 diff
(100 %id)
AI751441 Bone, Hip .a 4885 to 5242 366 to 9       358/373
(95 %)
0 diff
(100 %id)
AI752628 Bone, Hip .a 4885 to 5253 378 to 9       370/384
(96 %)
0 diff
(100 %id)
BQ575358 Chondrosarcoma Grade II, Left Pelvis .a 4885 to 5264 398 to 19   AAA   380/403
(94 %)
0 diff
(100 %id)
AW069755 bone marrow stroma .a 4886 to 5264 397 to 19   AAA   379/379
(100 %)
0 diff
(100 %id)
AI750919 Bone, Hip .a 4891 to 5013 124 to 1       124/124
(100 %)
2 diff
(98.4 %id)
AI752355 Bone, Hip .a 4894 to 5025 159 to 27   AAA   133/133
(100 %)
2 diff
(98.5 %id)
BF056654 fibrotheoma, ovary .a 4915 to 5268 354 to 1   tiling clone,   354/354
(100 %)
1 diff
(99.8 %id)
DR977725 brain .a 4933 to 5013 1 to 80   AAA Submitted on the opposite strand 80/80
(100 %)
3 diff
(96.3 %id)
AW166270 cervix .a 4953 to 5026 75 to 2       74/75
(98 %)
0 diff
(100 %id)
AA665807 bone marrow stroma .a 5038 to 5265 228 to 1       228/228
(100 %)
3 diff
(98.7 %id)
BG939812 bone marrow stroma .a 5064 to 5264 219 to 19   AAA   201/201
(100 %)
3 diff
(98.6 %id)
CF264714 Brain glioblastoma .b 1 to 873 1 to 879   tiling clone,   879/880
(99 %)
12 diff
(98.7 %id)
BF928722 nervous_tumor .b 664 to 967 398 to 94   tiling clone, Submitted on the opposite strand 305/398
(76 %)
0 diff
(100 %id)
DB262684 uterus .c 1 to 550 2 to 551 E158G tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
BG258877 embryonal carcinoma, cell line, testis .d 1 to 523 1 to 522 Q96R I97S Q98R V99L G100E ... tiling clone,   522/890
(58 %)
5 diff
(99.5 %id)
DA218107 brain .e 1 to 533 2 to 534   tiling clone, capped   533/533
(100 %)
1 diff
(99.9 %id)
DB083369 testis .e 234 to 782 2 to 550 L66R tiling clone, capped   549/549
(100 %)
2 diff
(99.7 %id)
DR002820 fetal brain .f 1 to 645 31 to 678   tiling clone,   648/684
(94 %)
11 diff
(98.4 %id)
BF749563 breast_normal .f 315 to 717 1 to 401   tiling clone,   401/401
(100 %)
19 diff
(95.3 %id)
DA660505   .g 1 to 566 2 to 568 L66R tiling clone, capped   567/567
(100 %)
3 diff
(99.5 %id)
EB388199 eye, optic nerve .h-u 1 to 753 1 to 742   tiling clone,   742/742
(100 %)
14 diff
(98.2 %id)
AF109681   Gene ITGA11, variant not shown       AAA This clone was ignored    
AF111799 aorta Gene ITGA11, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AK095863   Gene ITGA11, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK304778 uterus Gene ITGA11, variant not shown         Suspected internal deletion, this clone was ignored    
BF844981 head_neck Gene ITGA11, variant not shown              
AV697656 hepatocellular carcinoma Gene ITGA11, variant not shown              
AV685646 hepatocellular carcinoma Gene ITGA11, variant not shown              
AV699874 hepatocellular carcinoma Gene ITGA11, variant not shown              
AV692356 hepatocellular carcinoma Gene ITGA11, variant not shown         This clone was ignored    
AV688762 hepatocellular carcinoma Gene ITGA11, variant not shown              
AV700783 hepatocellular carcinoma Gene ITGA11, variant not shown              
AV694215 hepatocellular carcinoma Gene ITGA11, variant not shown         This clone was ignored    
DB318384   Gene ITGA11, variant not shown         Suspected internal deletion, this clone was ignored    
DA552113   Gene ITGA11, variant not shown       capped Suspected internal deletion, this clone was ignored    
H15811 breast Gene ITGA11, variant not shown         This clone was ignored    
H16112 breast Gene ITGA11, variant not shown         This clone was ignored    
AI738528 colon, colon tumor, RER+ Gene ITGA11, variant not shown         This clone was ignored    
BF509527   Gene ITGA11, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AA852614 Bone, Hip Gene ITGA11, variant not shown         This clone was ignored    
AI750918 Bone, Hip Gene ITGA11, variant not shown         This clone was ignored    
BG938474 Bone, Hip Gene ITGA11, variant not shown         This clone was ignored    
BG938475 Bone, Hip Gene ITGA11, variant not shown         This clone was ignored    
BG939167 Bone, Hip Gene ITGA11, variant not shown       AAA This clone was ignored    
BQ446271 Knee, Osteoarthritic Cartilage Gene ITGA11, variant not shown       AAA This clone was ignored    
BQ448050 Knee, Osteoarthritic Cartilage Gene ITGA11, variant not shown       AAA This clone was ignored    
CA414176 Knee, Osteoarthritic Cartilage Gene ITGA11, variant not shown       AAA This clone was ignored    
CA412082 Chondrosarcoma Grade II, Left Pelvis Gene ITGA11, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI