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Gene ITGA10TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
100 supporting clones for gene ITGA10 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF112345   ITGA10.a 1 to 5169 1 to 5169 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 5169/5169
(100 %)
3 diff
(100.0 %id)
NM_003637.3   ITGA10.a 1 to 5169 1 to 5169 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 5169/5169
(100 %)
2 diff
(100.0 %id)
DN999718   ITGA10.a 2 to 564 1 to 563       563/563
(100 %)
12 diff
(97.9 %id)
BX504665   ITGA10.a 16 to 616 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
BX474527   ITGA10.a 17 to 526 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
BX474009   ITGA10.a 17 to 412 1 to 396       396/396
(100 %)
3 diff
(99.3 %id)
BX474428   ITGA10.a 18 to 525 11 to 518       508/518
(98 %)
8 diff
(98.5 %id)
DA223328 brain ITGA10.a 19 to 583 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BX474556   ITGA10.a 25 to 549 1 to 525       525/525
(100 %)
0 diff
(100 %id)
BX474109   ITGA10.a 31 to 561 1 to 531       531/531
(100 %)
0 diff
(100 %id)
DB194576 trachea ITGA10.a 42 to 607 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BP277771   ITGA10.a 46 to 633 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
DB225172 trachea ITGA10.a 47 to 625 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BX474100   ITGA10.a 51 to 369 21 to 344       324/344
(94 %)
10 diff
(97.1 %id)
AK314255 trachea ITGA10.a 53 to 3580 1 to 3528 exact tiling clone,   3528/3528
(100 %)
2 diff
(100.0 %id)
DB214745 trachea ITGA10.a 54 to 509 2 to 458   capped   457/457
(100 %)
1 diff
(99.8 %id)
BG896789 cartilage ITGA10.a 55 to 401 77 to 423       347/355
(97 %)
6 diff
(98.4 %id)
AF074015   ITGA10.a 56 to 3903 1 to 3849 L844I V909G D926E AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3849/3849
(100 %)
11 diff
(99.8 %id)
AL708313 human skeletal muscle ITGA10.a 82 to 424 1 to 349       349/349
(100 %)
9 diff
(97.5 %id)
TI_1968233433   ITGA10.a 675 to 1842 1161 to 7       1155/1274
(90 %)
15 diff
(98.9 %id)
TI_2194697072   ITGA10.a 676 to 1831 7 to 1150       1144/1288
(88 %)
20 diff
(98.5 %id)
CK000752 mixed ITGA10.a 902 to 1683 7 to 788       782/789
(99 %)
5 diff
(99.4 %id)
TI_2194697043   ITGA10.a 1144 to 2311 12 to 1171       1160/1285
(90 %)
19 diff
(98.6 %id)
TI_2194697094   ITGA10.a 1153 to 2340 1188 to 18       1171/1282
(91 %)
19 diff
(98.6 %id)
TI_1968233513   ITGA10.a 1304 to 2351 1046 to 5       1042/1255
(83 %)
5 diff
(99.7 %id)
BG900143 cartilage ITGA10.a 1406 to 1676 94 to 364       271/286
(94 %)
6 diff
(98.0 %id)
DB233657 trachea ITGA10.a 1457 to 2000 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA338958 hippocampus ITGA10.a 1597 to 2179 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
TI_2194697044   ITGA10.a 1602 to 2735 10 to 1138       1129/1278
(88 %)
15 diff
(98.9 %id)
TI_2194697093   ITGA10.a 1661 to 2742 1084 to 6       1079/1266
(85 %)
10 diff
(99.3 %id)
BU624984 cell lines, Enchondroma ITGA10.a 1755 to 2373 623 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 619/623
(99 %)
6 diff
(99.1 %id)
TI_1968233511   ITGA10.a 2159 to 3346 1191 to 14       1178/1299
(90 %)
8 diff
(99.4 %id)
BP345328 synovial membrane ITGA10.a 2174 to 2756 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA993281 synovial membrane tissue from rheumatioidarthritis ITGA10.a 2287 to 2820 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BG938743 Bone, Hip ITGA10.a 2345 to 2927 18 to 600       583/600
(97 %)
10 diff
(98.4 %id)
TI_2194697042   ITGA10.a 2464 to 3779 1 to 1297       1297/1300
(99 %)
78 diff
(94.0 %id)
TI_2194697092   ITGA10.a 2645 to 3812 1164 to 4       1161/1279
(90 %)
10 diff
(99.3 %id)
DA547594   ITGA10.a 2734 to 3297 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
TI_2194695828   ITGA10.a 2739 to 3836 1170 to 75       1096/1264
(86 %)
33 diff
(97.4 %id)
BQ677070 melanotic melanoma, cell line, skin ITGA10.a 2772 to 3697 14 to 947       934/949
(98 %)
31 diff
(96.8 %id)
BQ683664 melanotic melanoma, cell line, skin ITGA10.a 2772 to 3627 21 to 882       861/977
(88 %)
33 diff
(96.7 %id)
TI_2194699760   ITGA10.a 2801 to 3836 1096 to 69       1028/1250
(82 %)
14 diff
(98.9 %id)
TI_1968231079   ITGA10.a 2945 to 3836 963 to 73       893/972
(91 %)
21 diff
(97.9 %id)
N72734 multiple sclerosis lesions ITGA10.a 3080 to 3523 1 to 444       444/447
(99 %)
7 diff
(98.5 %id)
TI_2194697070   ITGA10.a 3113 to 3836 13 to 736       724/1281
(56 %)
8 diff
(99.4 %id)
AA461265   ITGA10.a 3234 to 3545 1 to 314   fully sequenced,   314/314
(100 %)
2 diff
(99.4 %id)
DB516468 testis ITGA10.a 3442 to 3902 1 to 461     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
AA460958   ITGA10.a 3484 to 3903 426 to 7   fully sequenced,   420/426
(98 %)
0 diff
(100 %id)
CF265130 Brain glioblastoma ITGA10.a 3518 to 4404 1 to 889       889/889
(100 %)
11 diff
(98.8 %id)
BG927135 cartilage ITGA10.a 3644 to 4104 81 to 542       462/471
(98 %)
6 diff
(98.8 %id)
N58870 multiple sclerosis lesions ITGA10.a 4737 to 5165 429 to 1       429/429
(100 %)
0 diff
(100 %id)
AK304183 trachea ITGA10.b 1 to 3567 1 to 3541 D72G V73P Y74Q R75C C76P ... tiling clone, Suspected internal deletion 3541/3541
(100 %)
2 diff
(100.0 %id)
AK304155 trachea ITGA10.c 1 to 3479 1 to 3478 L1008P tiling clone,   3478/3478
(100 %)
5 diff
(99.9 %id)
DC416482 trachea ITGA10.c 1 to 559 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC419057 trachea ITGA10.c 8 to 589 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BC140831 Brain, cerebellum, PCR rescued clones ITGA10.d 1 to 3380 1 to 3380 exact tiling clone,   3380/3380
(100 %)
1 diff
(100.0 %id)
BC144637 Brain, cerebellum, PCR rescued clones ITGA10.d 1 to 3381 1 to 3381 exact tiling clone,   3381/3381
(100 %)
2 diff
(100.0 %id)
TI_1968233431   ITGA10.d 1 to 367 377 to 11       367/1276
(28 %)
0 diff
(100 %id)
TI_2194695820   ITGA10.d 1 to 1069 49 to 1121       1073/1189
(90 %)
22 diff
(98.2 %id)
TI_2194699380   ITGA10.d 1 to 1110 49 to 1149       1101/1253
(87 %)
21 diff
(98.4 %id)
BP285155 lung ITGA10.e 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
1 diff
(99.9 %id)
BX504849   ITGA10.e 550 to 1143 1 to 594   tiling clone,   594/595
(99 %)
2 diff
(99.7 %id)
BX504850   ITGA10.e 4073 to 4817 749 to 4   tiling clone,   746/749
(99 %)
0 diff
(100 %id)
BM311010 Pancreas, Purified pancreatic islet ITGA10.f 1 to 549 1 to 549   tiling clone,   549/549
(100 %)
3 diff
(99.5 %id)
AY358325   ITGA10.f 75 to 1519 30 to 1475 exact tiling clone,   1446/1486
(97 %)
10 diff
(99.4 %id)
CK821579 Pancreas, Purified pancreatic islet ITGA10.f 84 to 599 1 to 516 exact   Submitted on the opposite strand 516/516
(100 %)
0 diff
(100 %id)
BU618056 Bone, Subchondral Bone ITGA10.f 472 to 1168 714 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 696/696
(100 %)
5 diff
(99.3 %id)
AA430219   ITGA10.f 711 to 1171 459 to 1       459/459
(100 %)
22 diff
(95.3 %id)
AI903814 breast ITGA10.g 1 to 298 1 to 298   tiling clone,   298/298
(100 %)
4 diff
(98.7 %id)
DA183914 amygdala ITGA10.g 135 to 668 2 to 535 exact tiling clone, capped   534/534
(100 %)
2 diff
(99.7 %id)
AL710595 human skeletal muscle ITGA10.h 1 to 275 1 to 276 K88Q R89E G91R tiling clone,   276/276
(100 %)
1 diff
(99.7 %id)
DB450977 testis ITGA10.i 1 to 474 1 to 474 exact tiling clone,   474/474
(100 %)
3 diff
(99.4 %id)
AK074563 whole embryo, mainly head ITGA10.j-u 1 to 1966 2 to 1967 exact tiling clone, available from FLJ,   1967/1967
(100 %)
2 diff
(99.9 %id)
DA570547 whole embryo, mainly head ITGA10.j-u 1 to 819 2 to 821 exact capped   820/820
(100 %)
4 diff
(99.6 %id)
TI_153963045   ITGA10.j-u 8 to 699 77 to 754 K32* fully sequenced,   678/678
(100 %)
29 diff
(95.8 %id)
BG898045 cartilage ITGA10.j-u 67 to 707 51 to 691       641/691
(92 %)
6 diff
(99.2 %id)
H44722 breast ITGA10.j-u 190 to 531 1 to 353       353/359
(98 %)
19 diff
(94.8 %id)
BQ183451 Knee, Osteoarthritic Cartilage ITGA10.j-u 628 to 1275 666 to 19   AAA   648/648
(100 %)
1 diff
(99.9 %id)
BG938744 Bone, Hip ITGA10.j-u 635 to 1247 615 to 3       613/615
(99 %)
0 diff
(100 %id)
BQ015295 Chondrosarcoma, Left Pubic Bone ITGA10.j-u 646 to 1275 644 to 14   AAA   631/631
(100 %)
5 diff
(99.3 %id)
BQ007173 Chondrosarcoma, Left Pelvis ITGA10.j-u 646 to 1275 649 to 19   AAA   631/631
(100 %)
2 diff
(99.7 %id)
TI_151700134   ITGA10.j-u 669 to 1275 736 to 133   fully sequenced, AAA   604/604
(100 %)
71 diff
(88.3 %id)
BF366858 nervous_tumor ITGA10.j-u 684 to 839 158 to 5       154/158
(97 %)
0 diff
(100 %id)
BM992008 Bone, Subchondral Bone ITGA10.j-u 697 to 1275 597 to 19   AAA   579/579
(100 %)
1 diff
(99.9 %id)
BE349027 malignant melanoma, metastatic to lymphnode, skin ITGA10.j-u 785 to 1276 492 to 1       492/492
(100 %)
0 diff
(100 %id)
BM687189 eye, optic nerve ITGA10.j-u 827 to 1277 7 to 457   tiling clone,   451/457
(98 %)
6 diff
(98.7 %id)
AI291926 placenta ITGA10.j-u 843 to 1276 436 to 3       434/436
(99 %)
0 diff
(100 %id)
AI277327 placenta ITGA10.j-u 910 to 1276 370 to 4       367/370
(99 %)
0 diff
(100 %id)
H43656 breast ITGA10.j-u 912 to 1261 365 to 10       356/382
(93 %)
0 diff
(100 %id)
BM768628 stomach ITGA10.j-u 949 to 1275 1 to 327   AAA   327/327
(100 %)
0 diff
(100 %id)
BI495503 cochlea, ear ITGA10.j-u 986 to 1276 8 to 298   AAA   291/299
(97 %)
1 diff
(99.7 %id)
DB357324 whole embryo, mainly head ITGA10.j-u 1461 to 1964 500 to 3       498/505
(98 %)
0 diff
(100 %id)
Z33537   ITGA10.k 1 to 378 1 to 377   tiling clone,   377/377
(100 %)
5 diff
(98.7 %id)
DA330149 hippocampus ITGA10.k 196 to 761 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
AW968357   ITGA10.l-u 1 to 633 1 to 633 R24P E41K tiling clone,   633/633
(100 %)
8 diff
(98.8 %id)
AA465480 germinal center B cell ITGA10.l-u 1 to 539 10 to 548       539/548
(98 %)
6 diff
(99.0 %id)
BI043804 ovary ITGA10.l-u 321 to 523 14 to 220       207/234
(88 %)
16 diff
(93.2 %id)
AA485068 germinal center B cell ITGA10.l-u 423 to 684 262 to 1 A47V tiling clone,   262/262
(100 %)
1 diff
(99.7 %id)
BG897541 cartilage ITGA10.m-u 1 to 577 87 to 663 exact tiling clone,   577/594
(97 %)
6 diff
(99.0 %id)
DA582248 lung ITGA10.n 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
BE835623 prostate_normal ITGA10.o-u 1 to 385 388 to 4 N26Y tiling clone,   385/388
(99 %)
0 diff
(100 %id)
BE835624 prostate_normal ITGA10.o-u 1 to 372 378 to 7 N26Y tiling clone,   372/378
(98 %)
0 diff
(100 %id)
TI_2194697091   Gene ITGA10, variant not shown         Suspected internal deletion, this clone was ignored    
AA460959   Gene ITGA10, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AA461266   Gene ITGA10, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
DB067901 testis Gene ITGA10, variant not shown       capped This clone was ignored    
DC416702 trachea Gene ITGA10, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m-u, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI