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Gene ISL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
84 supporting clones for gene ISL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR007241 testis ISL1.a 1 to 578 1 to 581   tiling clone,   581/581
(100 %)
6 diff
(99.0 %id)
BC031213 testis ISL1.a 41 to 2462 1 to 2422 exact available from MGC, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 2422/2422
(100 %)
6 diff
(99.8 %id)
DB451906 testis ISL1.a 42 to 549 1 to 508       508/508
(100 %)
3 diff
(99.5 %id)
NM_002202.2   ISL1.a 42 to 2748 1 to 2707 exact RefSeq, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2707/2707
(100 %)
0 diff
(100 %id)
BI463721 testis ISL1.a 82 to 599 32 to 537       506/538
(94 %)
15 diff
(97.3 %id)
AL711661 human skeletal muscle ISL1.a 318 to 938 10 to 630       621/621
(100 %)
1 diff
(99.9 %id)
AK290742   ISL1.a 324 to 1732 1 to 1409 Y51C     1409/1411
(99 %)
2 diff
(99.9 %id)
DA608113   ISL1.a 325 to 879 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA910172   ISL1.a 333 to 889 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CN287796 embryonic stem cells, DMSO-treated H9 cellline ISL1.a 334 to 833 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
BQ639172 eye, retina ISL1.a 334 to 956 1 to 623       623/623
(100 %)
0 diff
(100 %id)
BC017027.
matches multiple genes
adenocarcinoma, colon, Colon, adenocarcinoma ISL1.a 335 to 2462 1 to 2127 K11N R12V L13* available from MGC, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base), also hits gene KLK11 2127/2127
(100 %)
1 diff
(100.0 %id)
CF593661 Human Placenta, placenta ISL1.a 339 to 1042 29 to 735       707/868
(81 %)
15 diff
(98.3 %id)
DA604140   ISL1.a 340 to 725 2 to 387   capped   386/386
(100 %)
0 diff
(100 %id)
BG723707 testis ISL1.a 342 to 1001 1 to 677       677/680
(99 %)
46 diff
(93.3 %id)
DB180199 kidney, tumor tissue ISL1.a 345 to 887 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA607233   ISL1.a 349 to 911 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB053640 testis ISL1.a 349 to 918 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
BX394774 Neuroblastoma Cot 25-normalized ISL1.a 351 to 1179 1 to 824       824/824
(100 %)
7 diff
(99.2 %id)
U07559 pancreatic islets ISL1.a 351 to 2748 1 to 2397 exact tiling clone,   2397/2397
(100 %)
3 diff
(99.9 %id)
BE869514 adenocarcinoma, colon ISL1.a 355 to 1054 1 to 695   available from MGC,   695/891
(78 %)
21 diff
(97.7 %id)
DA365597 subthalamic nucleus ISL1.a 362 to 914 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA606866   ISL1.a 362 to 902 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BX112051 eye, retina ISL1.a 365 to 515 1 to 152       152/161
(94 %)
2 diff
(98.8 %id)
AA018742 eye, retina ISL1.a 365 to 669 1 to 305       305/307
(99 %)
5 diff
(98.4 %id)
BP374491 umbilical cord ISL1.a 366 to 946 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA878680 Prostate ISL1.a 367 to 935 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CN287795 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 ISL1.a 384 to 640 1 to 257       257/257
(100 %)
1 diff
(99.7 %id)
AL525241 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized ISL1.a 385 to 1351 1 to 962       962/962
(100 %)
13 diff
(98.7 %id)
AA057085 eye, retina ISL1.a 401 to 735 1 to 339       339/355
(95 %)
14 diff
(96.1 %id)
BX332487 Neuroblastoma Cot 25-normalized ISL1.a 451 to 1351 1 to 896       896/896
(100 %)
13 diff
(98.6 %id)
S70721   ISL1.a 585 to 1644 1 to 1060 exact     1060/1060
(100 %)
0 diff
(100 %id)
CV024730 mixed ISL1.a 590 to 1108 1 to 519       519/519
(100 %)
8 diff
(98.5 %id)
TI_1948122167   ISL1.a 590 to 1571 139 to 1133       993/1345
(73 %)
36 diff
(97.4 %id)
TI_1948122321   ISL1.a 590 to 1074 123 to 608   fully sequenced, Submitted on the opposite strand 486/608
(79 %)
12 diff
(98.1 %id)
TI_1948122342   ISL1.a 590 to 1468 139 to 1024       886/1344
(65 %)
30 diff
(97.8 %id)
TI_1948122518   ISL1.a 590 to 1494 140 to 1051       912/1365
(66 %)
38 diff
(97.3 %id)
TI_1948122685   ISL1.a 851 to 1648 936 to 131     Submitted on the opposite strand 806/1361
(59 %)
27 diff
(98.1 %id)
BM701959.
matches multiple genes
eye, optic nerve ISL1.a 961 to 1666 1 to 706     also hits gene SORBS2 706/710
(99 %)
6 diff
(99.2 %id)
TI_1948122320   ISL1.a 1037 to 1648 739 to 130   fully sequenced, Submitted on the opposite strand 610/739
(82 %)
1 diff
(99.9 %id)
CN287797 embryonic stem cells, cell lines H1, H7, andH9 ISL1.a 1060 to 1791 1 to 732       732/732
(100 %)
0 diff
(100 %id)
BX430881.
matches multiple genes
neuroblastoma ISL1.a 1064 to 1953 30 to 920     also hits gene BMS1 891/931
(95 %)
16 diff
(98.3 %id)
BU784283 insulinoma, Pancreas ISL1.a 1288 to 1879 7 to 598   fully sequenced, Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 592/598
(98 %)
0 diff
(100 %id)
W26907 eye, retina ISL1.a 1390 to 1812 446 to 24       423/480
(88 %)
6 diff
(98.8 %id)
BQ286493 Pancreas, Purified pancreatic islet ISL1.a 1501 to 2086 1 to 586       586/586
(100 %)
2 diff
(99.7 %id)
AL525413 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized ISL1.a 1586 to 2712 1111 to 1   tiling clone,   1111/1152
(96 %)
30 diff
(97.4 %id)
BU784014 insulinoma, Pancreas ISL1.a 1850 to 2473 639 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 624/624
(100 %)
1 diff
(99.9 %id)
AA018683 eye, retina ISL1.a 1986 to 2463 490 to 1       490/491
(99 %)
11 diff
(97.8 %id)
AA057381 eye, retina ISL1.a 2077 to 2463 389 to 1       389/400
(97 %)
2 diff
(99.5 %id)
AA016996 eye, retina ISL1.b 1 to 481 1 to 482   tiling clone,   480/482
(99 %)
1 diff
(99.8 %id)
BX447124 neuroblastoma ISL1.b 259 to 1191 1 to 931   tiling clone,   931/934
(99 %)
12 diff
(98.8 %id)
BG622909 placenta ISL1.b 1136 to 1975 1 to 847   tiling clone,   847/1016
(83 %)
40 diff
(96.1 %id)
AA992221   ISL1.b 1146 to 1480 336 to 1       336/336
(100 %)
7 diff
(98.0 %id)
BP387948 pancreatic islet ISL1.b 1161 to 1595 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
CK825835 Pancreas, Purified pancreatic islet ISL1.b 1167 to 1746 1 to 580   tiling clone, Submitted on the opposite strand 580/580
(100 %)
0 diff
(100 %id)
BU787717 insulinoma, Pancreas ISL1.b 1202 to 1688 2 to 488   fully sequenced,   487/488
(99 %)
5 diff
(99.0 %id)
CB243899 Human Lung Epithelial cells, lung ISL1.b 1333 to 2089 775 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 757/759
(99 %)
2 diff
(99.8 %id)
BQ373424 prostate_tumor ISL1.b 1422 to 1754 392 to 60       333/392
(84 %)
0 diff
(100 %id)
CN478832 Human Lung Epithelial cells, lung ISL1.b 1461 to 2082 637 to 15   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 623/623
(100 %)
2 diff
(99.7 %id)
BU729625.
matches multiple genes
eye, optic nerve ISL1.b 1461 to 2089 647 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base), also hits gene SORBS2 629/629
(100 %)
4 diff
(99.4 %id)
AL049164 testis ISL1.b 1527 to 2089 563 to 3       561/563
(99 %)
0 diff
(100 %id)
BQ187955 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ISL1.b 1599 to 2082 1 to 484   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 484/484
(100 %)
0 diff
(100 %id)
BP385774 pancreatic islet ISL1.b 1607 to 2086 1 to 481     Submitted on the opposite strand 481/481
(100 %)
1 diff
(99.8 %id)
BM718071 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ISL1.b 1609 to 1919 1 to 311   fully sequenced, Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 311/311
(100 %)
5 diff
(98.4 %id)
CN287799 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 ISL1.b 1616 to 2238 1 to 623   tiling clone,   623/623
(100 %)
0 diff
(100 %id)
AA993442   ISL1.b 1616 to 2092 477 to 1       477/477
(100 %)
2 diff
(99.6 %id)
DB517432 testis ISL1.b 1628 to 2089 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BQ024047 placenta ISL1.b 1643 to 2096 454 to 1       454/454
(100 %)
1 diff
(99.8 %id)
CN287798 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 ISL1.b 1649 to 1920 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
AU309551 neuroblastoma ISL1.b 1651 to 2231 599 to 17       583/600
(97 %)
0 diff
(100 %id)
BU787440 insulinoma, Pancreas ISL1.b 1658 to 2103 446 to 1   fully sequenced,   446/446
(100 %)
4 diff
(99.2 %id)
BQ022318 placenta ISL1.b 1675 to 2095 421 to 1       421/424
(99 %)
1 diff
(99.8 %id)
AI656372 pooled germ cell tumors ISL1.b 1676 to 2104 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
TI_149279337   ISL1.b 1692 to 2375 833 to 150   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 684/834
(82 %)
0 diff
(100 %id)
AI810730 Prostate ISL1.b 1700 to 2089 390 to 1       390/390
(100 %)
1 diff
(99.8 %id)
BP387544 pancreatic islet ISL1.b 1709 to 2086 1 to 379     Submitted on the opposite strand 379/379
(100 %)
6 diff
(98.5 %id)
AI277006 placenta ISL1.b 1717 to 2095 379 to 1       379/379
(100 %)
0 diff
(100 %id)
AI783715 Prostate ISL1.b 1724 to 2089 381 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 366/366
(100 %)
1 diff
(99.8 %id)
AI868529 pooled ISL1.b 1745 to 2088 344 to 1       344/344
(100 %)
2 diff
(99.5 %id)
AI147086 pooled ISL1.b 1750 to 2088 339 to 1       339/339
(100 %)
2 diff
(99.5 %id)
AI784148 pooled ISL1.b 1776 to 2088 314 to 1       314/314
(100 %)
2 diff
(99.4 %id)
BQ185145 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ISL1.b 1822 to 2101 276 to 1   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 276/276
(100 %)
4 diff
(98.6 %id)
BM969520 lung, Primary Lung Epithelial Cells ISL1.b 1852 to 2372 531 to 11   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 521/521
(100 %)
13 diff
(97.6 %id)
BQ269840 Pancreas, Purified pancreatic islet ISL1.b 1864 to 2383 526 to 7       520/526
(98 %)
0 diff
(100 %id)
AI963450 adenocarcinoma, Pancreas ISL1.b 1870 to 2375 510 to 5   tiling clone,   506/510
(99 %)
0 diff
(100 %id)
BX955450   ISL1.b 1888 to 2256 1 to 372       372/372
(100 %)
2 diff
(99.5 %id)
BM680522 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ISL1.b 1889 to 2372 500 to 15   fully sequenced, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 486/486
(100 %)
3 diff
(99.4 %id)
AA016264 eye, retina ISL1.b 1913 to 2372 468 to 1       468/470
(99 %)
11 diff
(97.7 %id)
AI581396 poorly differentiated adenocarcinoma withsignet ring cell features, stomach ISL1.b 1980 to 2248 269 to 1       269/269
(100 %)
0 diff
(100 %id)
AI167182 pooled ISL1.b 2106 to 2371 270 to 5       266/270
(98 %)
0 diff
(100 %id)
AL049163 testis ISL1.c-u 1 to 506 1 to 507 exact tiling clone,   507/507
(100 %)
1 diff
(99.9 %id)
BE843217 testis_normal ISL1.d-u 1 to 195 38 to 227   tiling clone,   190/227
(83 %)
6 diff
(97.4 %id)
BM667310 eye, fetal eyes Gene ISL1, variant not shown       AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base)    
BM698144 eye, fetal eyes Gene ISL1, variant not shown         Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base)    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI