cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AF124733 | .a | 1 to 2213 | 1 to 2212 | exact | tiling clone, | 2212/2212 (100 %) | 7 diff (99.7 %id) | ||
BC110912 | Placenta, choriocarcinoma | .a | 113 to 2204 | 1 to 2092 | A119T | tiling clone, AAA | 2092/2092 (100 %) | 2 diff (100.0 %id) | |
BC136505 | Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones | .a | 13 to 1834 | 1 to 1822 | exact | tiling clone, | 1822/1822 (100 %) | 0 diff (100 %id) | |
BC136506 | Testicle, PCR rescued clones | .a | 13 to 1834 | 1 to 1822 | exact | 1822/1822 (100 %) | 0 diff (100 %id) | ||
TI_2016723919 | .a | 14 to 598 | 48 to 640 | 601/640 (93 %) | 8 diff (98.8 %id) | ||||
TI_2016724309 | .a | 952 to 1191 | 19 to 256 | 238/256 (92 %) | 7 diff (97.3 %id) | ||||
TI_2016727159 | .a | 14 to 981 | 44 to 1009 | 975/1079 (90 %) | 35 diff (96.8 %id) | ||||
TI_2016728079 | .a | 13 to 934 | 929 to 10 | 920/1236 (74 %) | 1 diff (100.0 %id) | ||||
TI_2016728087 | .a | 13 to 1177 | 1172 to 13 | 1160/1255 (92 %) | 21 diff (98.4 %id) | ||||
TI_2016730593 | .a | 14 to 1112 | 43 to 1137 | 1103/1207 (91 %) | 25 diff (98.0 %id) | ||||
TI_1971554881 | .a | 13 to 821 | 816 to 8 | 809/1266 (63 %) | 0 diff (100 %id) | ||||
TI_1971555277 | .a | 1547 to 1834 | 354 to 67 | 288/361 (79 %) | 0 diff (100 %id) | ||||
TI_1971558551 | .a | 13 to 1174 | 1164 to 15 | 1150/1314 (87 %) | 13 diff (99.1 %id) | ||||
TI_2194643012 | .c | 505 to 1600 | 45 to 1134 | exact | 1092/1134 (96 %) | 29 diff (97.5 %id) | |||
TI_2194643017 | .a | 742 to 1834 | 1171 to 74 | 1098/1245 (88 %) | 18 diff (98.6 %id) | ||||
TI_2194644505 | .a | 667 to 1183 | 12 to 528 | 517/529 (97 %) | 10 diff (98.2 %id) | ||||
TI_2194644508 | .a | 1469 to 1834 | 9 to 373 | 365/1326 (27 %) | 2 diff (99.9 %id) | ||||
TI_2194644511 | .a | 952 to 1194 | 19 to 260 | 242/360 (67 %) | 2 diff (99.5 %id) | ||||
TI_2194644521 | .a | 671 to 1189 | 20 to 539 | 520/569 (91 %) | 8 diff (98.6 %id) | ||||
TI_2194644524 | .a | 1475 to 1822 | 21 to 371 | 351/371 (94 %) | 6 diff (98.4 %id) | ||||
TI_2194644526 | .a | 927 to 1180 | 1 to 252 | 252/252 (100 %) | 9 diff (96.5 %id) | ||||
TI_2194645283 | .c | 505 to 1549 | 42 to 1077 | exact | 1036/1225 (84 %) | 20 diff (98.4 %id) | |||
TI_2194645662 | .a | 805 to 1834 | 1100 to 74 | 1027/1272 (80 %) | 7 diff (99.5 %id) | ||||
BF831125 | head_neck | .a | 1913 to 2118 | 1 to 205 | 205/205 (100 %) | 3 diff (98.6 %id) | |||
EC439777 | Prostate | .a | 2161 to 2230 | 1 to 70 | 70/73 (95 %) | 1 diff (98.7 %id) | |||
EC513796 | Prostate | .a | 2141 to 2233 | 1 to 94 | 94/96 (97 %) | 5 diff (94.8 %id) | |||
BY799479 | eye | .d | 1 to 528 | 1 to 528 | A8R H11P | tiling clone, | 528/536 (98 %) | 3 diff (99.5 %id) | |
AI246240 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .b | 1 to 259 | 259 to 1 | tiling clone, | 259/259 (100 %) | 3 diff (98.9 %id) | ||
AI566193 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .a | 1837 to 2221 | 393 to 9 | 385/393 (97 %) | 0 diff (100 %id) | |||
AI652266 | pooled germ cell tumors | .a | 1944 to 2208 | 269 to 5 | 265/269 (98 %) | 0 diff (100 %id) | |||
AI671516 | pooled germ cell tumors | .a | 1944 to 2204 | 276 to 16 | AAA | 261/261 (100 %) | 0 diff (100 %id) | ||
AI950190 | pooled germ cell tumors | .a | 1944 to 2208 | 269 to 5 | 265/269 (98 %) | 0 diff (100 %id) | |||
BE281254 | choriocarcinoma, placenta | .a | 1448 to 1998 | 26 to 576 | 551/577 (95 %) | 2 diff (99.7 %id) | |||
BE542576 | cervix | .a | 136 to 853 | 1 to 726 | 724/888 (81 %) | 49 diff (94.5 %id) | |||
BE407995 | choriocarcinoma, placenta | .a | 720 to 1386 | 1 to 661 | 661/661 (100 %) | 8 diff (98.8 %id) | |||
BE734058 | choriocarcinoma, placenta | .a | 719 to 1456 | 1 to 736 | 736/1015 (72 %) | 11 diff (99.0 %id) | |||
BE732926 | choriocarcinoma, placenta | .a | 719 to 1496 | 1 to 767 | 767/898 (85 %) | 20 diff (97.8 %id) | |||
BE900449 | choriocarcinoma, placenta | .a | 719 to 1190 | 1 to 475 | 475/960 (49 %) | 11 diff (98.9 %id) | |||
BG335143 | choriocarcinoma, placenta | .a | 1447 to 2169 | 1 to 722 | 722/1039 (69 %) | 4 diff (99.7 %id) | |||
BM549643 | astrocytoma grade IV, cell line, brain | .b | 67 to 778 | 46 to 761 | A43V S54I R55L D151N G156R ... | tiling clone, | 716/1268 (56 %) | 33 diff (97.4 %id) | |
BM563164 | astrocytoma grade IV, cell line, brain | .c | 1 to 660 | 1 to 663 | tiling clone, | 663/1202 (55 %) | 22 diff (98.2 %id) | ||
BC144204 | Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones | .c | 513 to 2370 | 1 to 1858 | exact | tiling clone, | 1858/1858 (100 %) | 0 diff (100 %id) | |
CF122313 | CNCAP(3)T-225 cell line, Prostate | .a | 1824 to 2231 | 444 to 35 | tiling clone, AAA | Submitted on the opposite strand | 410/410 (100 %) | 4 diff (99.1 %id) | |
NM_016358.2 | .a | 1 to 2227 | 1 to 2227 | exact | RefSeq, | 2227/2229 (99 %) | 5 diff (99.8 %id) | ||
TI_154181850 | .a | 1627 to 2231 | 704 to 97 | AAA | Submitted on the opposite strand | 608/849 (71 %) | 24 diff (97.2 %id) | ||
U90306 | .a | 356 to 692 | 1 to 337 | 337/337 (100 %) | 2 diff (99.5 %id) | ||||
BG335143 | choriocarcinoma, placenta | .a | 1447 to 2169 | 1 to 722 | 722/1039 (69 %) | 4 diff (99.7 %id) | |||
BM549643 | astrocytoma grade IV, cell line, brain | .b | 67 to 778 | 46 to 761 | A43V S54I R55L D151N G156R ... | tiling clone, | 716/1268 (56 %) | 33 diff (97.4 %id) | |
BM549643 | IMAGE:5441542 | IRX4.bAug10 | 778 | 761 | IMAGE:5441542 | 716 | 33 | ||
BM563164 | IMAGE:5478757 | IRX4.cAug10 | 660 | 663 | IMAGE:5478757 | 663 | 22 | ||
BM563164 | IMAGE:5478757 | IRX4.cAug10 | 660 | 663 | IMAGE:5478757 | 663 | 22 | ||
BC144204 | IMAGE:9052724 | IRX4.cAug10 | 2370 | 1858 | IMAGE:9052724 | 1858 | 0 | ||
CF122313 | IMAGE:30572028 | IRX4.aAug10 | 2231 | 35 | IMAGE:30572028 | Inverted | 410 | 4 | |
CF122313 | IMAGE:30572028 | IRX4.aAug10 | 2231 | 35 | IMAGE:30572028 | Inverted | 410 | 4 | |
NM_016358.2 | NM_016358 | IRX4.aAug10 | 2227 | 2227 | NM_016358 | 2227 | 5 | ||
TI_154181850 | TI_154181850 | IRX4.aAug10 | 2231 | 97 | TI_154181850 | Inverted | 608 | 24 | |
U90306 | U90306 | IRX4.aAug10 | 692 | 337 | U90306 | 337 | 2 |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes DCI |