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Gene IRX4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
46 supporting clones for gene IRX4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF124733   .a 1 to 2213 1 to 2212 exact tiling clone,   2212/2212
(100 %)
7 diff
(99.7 %id)
BC110912 Placenta, choriocarcinoma .a 113 to 2204 1 to 2092 A119T tiling clone, AAA   2092/2092
(100 %)
2 diff
(100.0 %id)
BC136505 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 13 to 1834 1 to 1822 exact tiling clone,   1822/1822
(100 %)
0 diff
(100 %id)
BC136506 Testicle, PCR rescued clones .a 13 to 1834 1 to 1822 exact     1822/1822
(100 %)
0 diff
(100 %id)
TI_2016723919   .a 14 to 598 48 to 640       601/640
(93 %)
8 diff
(98.8 %id)
TI_2016724309   .a 952 to 1191 19 to 256       238/256
(92 %)
7 diff
(97.3 %id)
TI_2016727159   .a 14 to 981 44 to 1009       975/1079
(90 %)
35 diff
(96.8 %id)
TI_2016728079   .a 13 to 934 929 to 10       920/1236
(74 %)
1 diff
(100.0 %id)
TI_2016728087   .a 13 to 1177 1172 to 13       1160/1255
(92 %)
21 diff
(98.4 %id)
TI_2016730593   .a 14 to 1112 43 to 1137       1103/1207
(91 %)
25 diff
(98.0 %id)
TI_1971554881   .a 13 to 821 816 to 8       809/1266
(63 %)
0 diff
(100 %id)
TI_1971555277   .a 1547 to 1834 354 to 67       288/361
(79 %)
0 diff
(100 %id)
TI_1971558551   .a 13 to 1174 1164 to 15       1150/1314
(87 %)
13 diff
(99.1 %id)
TI_2194643012   .c 505 to 1600 45 to 1134 exact     1092/1134
(96 %)
29 diff
(97.5 %id)
TI_2194643017   .a 742 to 1834 1171 to 74       1098/1245
(88 %)
18 diff
(98.6 %id)
TI_2194644505   .a 667 to 1183 12 to 528       517/529
(97 %)
10 diff
(98.2 %id)
TI_2194644508   .a 1469 to 1834 9 to 373       365/1326
(27 %)
2 diff
(99.9 %id)
TI_2194644511   .a 952 to 1194 19 to 260       242/360
(67 %)
2 diff
(99.5 %id)
TI_2194644521   .a 671 to 1189 20 to 539       520/569
(91 %)
8 diff
(98.6 %id)
TI_2194644524   .a 1475 to 1822 21 to 371       351/371
(94 %)
6 diff
(98.4 %id)
TI_2194644526   .a 927 to 1180 1 to 252       252/252
(100 %)
9 diff
(96.5 %id)
TI_2194645283   .c 505 to 1549 42 to 1077 exact     1036/1225
(84 %)
20 diff
(98.4 %id)
TI_2194645662   .a 805 to 1834 1100 to 74       1027/1272
(80 %)
7 diff
(99.5 %id)
BF831125 head_neck .a 1913 to 2118 1 to 205       205/205
(100 %)
3 diff
(98.6 %id)
EC439777 Prostate .a 2161 to 2230 1 to 70       70/73
(95 %)
1 diff
(98.7 %id)
EC513796 Prostate .a 2141 to 2233 1 to 94       94/96
(97 %)
5 diff
(94.8 %id)
BY799479 eye .d 1 to 528 1 to 528 A8R H11P tiling clone,   528/536
(98 %)
3 diff
(99.5 %id)
AI246240 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1 to 259 259 to 1   tiling clone,   259/259
(100 %)
3 diff
(98.9 %id)
AI566193 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1837 to 2221 393 to 9       385/393
(97 %)
0 diff
(100 %id)
AI652266 pooled germ cell tumors .a 1944 to 2208 269 to 5       265/269
(98 %)
0 diff
(100 %id)
AI671516 pooled germ cell tumors .a 1944 to 2204 276 to 16   AAA   261/261
(100 %)
0 diff
(100 %id)
AI950190 pooled germ cell tumors .a 1944 to 2208 269 to 5       265/269
(98 %)
0 diff
(100 %id)
BE281254 choriocarcinoma, placenta .a 1448 to 1998 26 to 576       551/577
(95 %)
2 diff
(99.7 %id)
BE542576 cervix .a 136 to 853 1 to 726       724/888
(81 %)
49 diff
(94.5 %id)
BE407995 choriocarcinoma, placenta .a 720 to 1386 1 to 661       661/661
(100 %)
8 diff
(98.8 %id)
BE734058 choriocarcinoma, placenta .a 719 to 1456 1 to 736       736/1015
(72 %)
11 diff
(99.0 %id)
BE732926 choriocarcinoma, placenta .a 719 to 1496 1 to 767       767/898
(85 %)
20 diff
(97.8 %id)
BE900449 choriocarcinoma, placenta .a 719 to 1190 1 to 475       475/960
(49 %)
11 diff
(98.9 %id)
BG335143 choriocarcinoma, placenta .a 1447 to 2169 1 to 722       722/1039
(69 %)
4 diff
(99.7 %id)
BM549643 astrocytoma grade IV, cell line, brain .b 67 to 778 46 to 761 A43V S54I R55L D151N G156R ... tiling clone,   716/1268
(56 %)
33 diff
(97.4 %id)
BM563164 astrocytoma grade IV, cell line, brain .c 1 to 660 1 to 663   tiling clone,   663/1202
(55 %)
22 diff
(98.2 %id)
BC144204 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 513 to 2370 1 to 1858 exact tiling clone,   1858/1858
(100 %)
0 diff
(100 %id)
CF122313 CNCAP(3)T-225 cell line, Prostate .a 1824 to 2231 444 to 35   tiling clone, AAA Submitted on the opposite strand 410/410
(100 %)
4 diff
(99.1 %id)
NM_016358.2   .a 1 to 2227 1 to 2227 exact RefSeq,   2227/2229
(99 %)
5 diff
(99.8 %id)
TI_154181850   .a 1627 to 2231 704 to 97   AAA Submitted on the opposite strand 608/849
(71 %)
24 diff
(97.2 %id)
U90306   .a 356 to 692 1 to 337       337/337
(100 %)
2 diff
(99.5 %id)
BG335143 choriocarcinoma, placenta .a 1447 to 2169 1 to 722       722/1039
(69 %)
4 diff
(99.7 %id)
BM549643 astrocytoma grade IV, cell line, brain .b 67 to 778 46 to 761 A43V S54I R55L D151N G156R ... tiling clone,   716/1268
(56 %)
33 diff
(97.4 %id)
BM549643 IMAGE:5441542 IRX4.bAug10 778 761 IMAGE:5441542     716 33
BM563164 IMAGE:5478757 IRX4.cAug10 660 663 IMAGE:5478757     663 22
BM563164 IMAGE:5478757 IRX4.cAug10 660 663 IMAGE:5478757     663 22
BC144204 IMAGE:9052724 IRX4.cAug10 2370 1858 IMAGE:9052724     1858 0
CF122313 IMAGE:30572028 IRX4.aAug10 2231 35 IMAGE:30572028 Inverted   410 4
CF122313 IMAGE:30572028 IRX4.aAug10 2231 35 IMAGE:30572028 Inverted   410 4
NM_016358.2 NM_016358 IRX4.aAug10 2227 2227 NM_016358     2227 5
TI_154181850 TI_154181850 IRX4.aAug10 2231 97 TI_154181850 Inverted   608 24
U90306 U90306 IRX4.aAug10 692 337 U90306     337 2
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI