To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene IRAK4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
163 supporting clones for gene IRAK4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001114182.2   .a 1 to 4341 1 to 4341 exact RefSeq, AAA   4341/4341
(100 %)
0 diff
(100 %id)
AY340963 Spleen .a 18 to 1701 1 to 1684 exact tiling clone,   1684/1684
(100 %)
1 diff
(100.0 %id)
DB012705 esophageal, tumor tissue .a 26 to 593 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DN999549   .a 27 to 398 1 to 372       372/372
(100 %)
6 diff
(98.4 %id)
DA549296   .a 33 to 603 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BP337541 coronary artery .a 37 to 622 1 to 586       586/587
(99 %)
3 diff
(99.5 %id)
DA949548 Spleen .a 38 to 588 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BG164491 hypernephroma, cell line, Kidney .a 97 to 829 1 to 727       727/859
(84 %)
11 diff
(98.8 %id)
TI_1948094239   .a 123 to 848 120 to 845       726/1500
(48 %)
9 diff
(99.4 %id)
TI_1948094685   .a 123 to 935 120 to 923       804/1321
(60 %)
30 diff
(97.8 %id)
AF445802   .a 131 to 1513 1 to 1383 V81A     1383/1383
(100 %)
1 diff
(100.0 %id)
AY283670   .a 131 to 1513 1 to 1383 V81A Q293*     1383/1383
(100 %)
2 diff
(99.9 %id)
AY283671   .a 131 to 1513 1 to 1381 V81A T208N T209C V210G A211S ...     1381/1381
(100 %)
2 diff
(99.9 %id)
AY730682   .a 131 to 1513 1 to 1383 exact     1383/1383
(100 %)
0 diff
(100 %id)
CV028007 mixed .a 131 to 754 1 to 625       625/626
(99 %)
6 diff
(99.1 %id)
TI_1948094381   .a 131 to 962 131 to 963   fully sequenced,   833/963
(86 %)
17 diff
(98.3 %id)
TI_1948094532   .a 131 to 909 130 to 917       787/1469
(53 %)
25 diff
(98.3 %id)
BU430802 lymph .a 380 to 707 8 to 335       328/335
(97 %)
9 diff
(97.4 %id)
TI_1948094240   .a 903 to 1529 748 to 118       631/1343
(46 %)
29 diff
(97.9 %id)
TI_1948094382   .a 931 to 1529 696 to 92   fully sequenced,   605/696
(86 %)
3 diff
(99.6 %id)
TI_1948094686   .a 963 to 1528 689 to 121       569/1342
(42 %)
42 diff
(96.9 %id)
NM_016123.3   .b 1 to 4293 1 to 4293 exact RefSeq, AAA   4293/4293
(100 %)
0 diff
(100 %id)
AK314288   .b 12 to 1465 1 to 1454 H306N tiling clone,   1454/1454
(100 %)
1 diff
(100.0 %id)
BC013316 Brain, primitive neuroectodermal .b 13 to 1613 1 to 1601 exact available from MGC, AAA   1601/1601
(100 %)
3 diff
(99.9 %id)
DA678040   .b 13 to 337 2 to 326   capped   325/325
(100 %)
0 diff
(100 %id)
BF696981 brain, primitive neuroectoderm .b 16 to 574 1 to 566       566/719
(78 %)
16 diff
(97.8 %id)
AY340962 Spleen .b 18 to 1653 1 to 1636 exact     1636/1636
(100 %)
1 diff
(100.0 %id)
DB228826 trachea .b 24 to 600 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BG616438 embryonal carcinoma, testis .b 31 to 683 1 to 658       658/811
(81 %)
20 diff
(97.6 %id)
BM151935 leukopheresis .b 31 to 307 1 to 277       277/313
(88 %)
7 diff
(97.8 %id)
CV573593 cornea, eye .b 33 to 644 1 to 612       612/612
(100 %)
0 diff
(100 %id)
DN998261 breast cancer, Mammary gland (cancer tissue) .b 33 to 589 8 to 564       557/564
(98 %)
6 diff
(99.0 %id)
AF155118   .b 34 to 2846 1 to 2815 V432G L437R R444S Q451H     2815/2817
(99 %)
11 diff
(99.7 %id)
AK000528   .b 54 to 2844 1 to 2791 exact tiling clone, available from FLJ, AAA   2791/2791
(100 %)
0 diff
(100 %id)
BP273722   .b 54 to 634 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
AK304583 uterus .c 1 to 1412 1 to 1412 K79Q tiling clone,   1412/1412
(100 %)
3 diff
(99.8 %id)
DC420982 uterus .c 1 to 591 1 to 591       591/591
(100 %)
4 diff
(99.4 %id)
NM_001145258.1   .c 4 to 3980 1 to 3977   RefSeq, AAA   3977/3977
(100 %)
0 diff
(100 %id)
BP260417 small intestine .c 115 to 697 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DN916939   .c 141 to 681 1 to 540       540/540
(100 %)
10 diff
(98.2 %id)
BF758197 colon .c 262 to 658 424 to 27     Submitted on the opposite strand 398/424
(93 %)
6 diff
(98.6 %id)
CD627532   .c 391 to 773 1 to 383       383/384
(99 %)
2 diff
(99.5 %id)
CD627533   .c 391 to 772 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
BX283594 blood, natural killer cells, cell line .c 790 to 1297 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
BM918155 blood, natural killer cells, cell line .c 791 to 1788 23 to 1032       1010/1090
(92 %)
34 diff
(96.9 %id)
DA830509 placenta .c 835 to 1575 2 to 745   capped   744/748
(99 %)
5 diff
(99.4 %id)
H53674 ovarian tumor, ovary .c 975 to 1322 1 to 351       351/351
(100 %)
3 diff
(99.2 %id)
BP294048 lung .c 991 to 1571 1 to 581       581/581
(100 %)
6 diff
(99.0 %id)
BI908535 leukocyte .c 1117 to 1692 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
TI_57237205   .c 1119 to 1692 73 to 645       573/645
(88 %)
8 diff
(98.8 %id)
AA343468 gall bladder .c 1136 to 1408 1 to 274       274/274
(100 %)
1 diff
(99.7 %id)
AW952925   .c 1137 to 1656 1 to 522       522/522
(100 %)
12 diff
(97.8 %id)
BE150443 head_neck .c 1139 to 1399 9 to 269       261/269
(97 %)
6 diff
(97.8 %id)
AW391525 stomach .c 1140 to 1668 532 to 3       530/544
(97 %)
0 diff
(100 %id)
BE150442 head_neck .c 1140 to 1659 1 to 520       520/539
(96 %)
7 diff
(98.8 %id)
AW380440 head_neck .c 1153 to 1655 508 to 12       497/517
(96 %)
0 diff
(100 %id)
BP260820 small intestine .c 1212 to 1786 1 to 575       575/575
(100 %)
5 diff
(99.2 %id)
AW969424   .c 1217 to 1756 539 to 1     Submitted on the opposite strand 539/539
(100 %)
2 diff
(99.7 %id)
BF875200 lung_tumor .c 1303 to 1772 472 to 5     Submitted on the opposite strand 468/472
(99 %)
0 diff
(100 %id)
AW299858 Kidney .c 1304 to 1752 454 to 5       450/454
(99 %)
0 diff
(100 %id)
TI_153988175   .c 1362 to 1759 496 to 96   AAA   401/403
(99 %)
22 diff
(94.6 %id)
BE245899 leukopheresis .c 1369 to 1757 391 to 3       389/391
(99 %)
0 diff
(100 %id)
BX105384 liver and spleen .c 1375 to 2069 1 to 697   tiling clone,   697/699
(99 %)
3 diff
(99.6 %id)
H78659 liver and spleen .c 1376 to 1740 1 to 370       370/370
(100 %)
5 diff
(98.7 %id)
H78769 liver and spleen .c 1376 to 1697 1 to 322       322/322
(100 %)
0 diff
(100 %id)
BQ307120 breast .c 1397 to 1948 116 to 665       550/667
(82 %)
5 diff
(99.3 %id)
AA447173   .c 1431 to 1723 1 to 293       293/293
(100 %)
0 diff
(100 %id)
AA628987   .c 1437 to 1752 319 to 4       316/319
(99 %)
0 diff
(100 %id)
AW204470   .c 1484 to 1759 293 to 18   AAA   276/276
(100 %)
5 diff
(98.2 %id)
BP331528 rectum .c 1508 to 2090 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
CA432346 cell lines, Chondrosarcoma .c 1516 to 2182 792 to 127   AAA   666/774
(86 %)
0 diff
(100 %id)
AA480342 colon .c 1518 to 1758 241 to 1       241/241
(100 %)
0 diff
(100 %id)
TI_154128018   .c 1696 to 2523 909 to 88   tiling clone, AAA   822/943
(87 %)
12 diff
(98.8 %id)
BF858123 prostate_tumor .c 1732 to 2193 468 to 7     Submitted on the opposite strand 462/468
(98 %)
0 diff
(100 %id)
AL547126 placenta, Placenta Cot 25-normalized .c 1879 to 2525 150 to 808       745/808
(92 %)
20 diff
(97.6 %id)
BE698166 uterus_tumor .c 1906 to 2031 126 to 1       126/126
(100 %)
0 diff
(100 %id)
BQ020242 Chondrosarcoma, Left Pubic Bone .c 1915 to 2518 622 to 19   AAA   604/604
(100 %)
0 diff
(100 %id)
DB375724 placenta .c 1965 to 2531 570 to 1   tiling clone,   570/572
(99 %)
13 diff
(97.8 %id)
H78687 liver and spleen .c 2098 to 2529 442 to 3       440/445
(98 %)
0 diff
(100 %id)
H78605 liver and spleen .c 2119 to 2524 412 to 1       412/412
(100 %)
19 diff
(95.4 %id)
N77258 liver and spleen .c 2555 to 3025 1 to 469   tiling clone,   469/470
(99 %)
12 diff
(97.5 %id)
AA829803 carcinoid, lung .c 3165 to 3573 1 to 409   tiling clone, Submitted on the opposite strand 409/409
(100 %)
3 diff
(99.3 %id)
N24218 melanocyte .c 3251 to 3514 1 to 264   tiling clone,   264/264
(100 %)
1 diff
(99.7 %id)
BG122877 adenocarcinoma, cell line, Liver .c 3255 to 3935 1 to 674       674/674
(100 %)
17 diff
(97.5 %id)
CA941749 Pancreas, Purified pancreatic islet .c 3260 to 3452 1 to 194   fully sequenced,   194/194
(100 %)
1 diff
(99.5 %id)
W19881 parathyroid gland, parathyroid tumor .c 3324 to 3910 10 to 594   tiling clone,   585/675
(86 %)
12 diff
(98.3 %id)
R77079 placenta .c 3341 to 3680 1 to 353   fully sequenced,   353/353
(100 %)
10 diff
(97.2 %id)
AA203573 liver and spleen .c 3349 to 3818 1 to 469       469/564
(83 %)
24 diff
(95.8 %id)
AA203580 liver and spleen .c 3349 to 3869 1 to 518       518/573
(90 %)
19 diff
(96.7 %id)
DN916940   .c 3382 to 3974 595 to 4       592/595
(99 %)
0 diff
(100 %id)
CA941399 Pancreas, Purified pancreatic islet .c 3395 to 3977 583 to 1       583/583
(100 %)
0 diff
(100 %id)
CA941471 Pancreas, Purified pancreatic islet .c 3422 to 3977 556 to 1   fully sequenced,   556/556
(100 %)
0 diff
(100 %id)
CA398253 eye, RPE/choroid .c 3442 to 3978 553 to 17   AAA   537/537
(100 %)
0 diff
(100 %id)
AI268357 carcinoid, lung .c 3447 to 3984 539 to 2       538/539
(99 %)
0 diff
(100 %id)
AA680156 liver and spleen .c 3501 to 3934 476 to 44       433/476
(90 %)
0 diff
(100 %id)
AI126481   .c 3510 to 3980 481 to 11   AAA   471/471
(100 %)
2 diff
(99.6 %id)
AI571581 adenocarcinoma, Pancreas .c 3511 to 3984 478 to 5   tiling clone,   474/478
(99 %)
0 diff
(100 %id)
AA488795 germinal center B cell .c 3520 to 3730 1 to 211   fully sequenced,   211/211
(100 %)
2 diff
(99.1 %id)
AA830798 germinal center B cell .c 3522 to 3978 483 to 27   AAA   457/457
(100 %)
1 diff
(99.8 %id)
CK906180 Islets of Langerhans, Pancreas .c 3542 to 3786 1 to 245       245/252
(97 %)
4 diff
(98.5 %id)
N55200 liver and spleen .c 3543 to 3978 461 to 6       456/461
(98 %)
0 diff
(100 %id)
BM127585 Islets of Langerhans, Pancreas .c 3558 to 3978 1 to 421       421/425
(99 %)
2 diff
(99.6 %id)
AA654421 lymph node, lymphoma .c 3572 to 3978 408 to 1       408/408
(100 %)
7 diff
(98.3 %id)
AA865248 2 pooled tumors (clear cell type), Kidney .c 3573 to 3978 411 to 6       406/411
(98 %)
0 diff
(100 %id)
AA443806   .c 3574 to 3980 410 to 4       407/410
(99 %)
0 diff
(100 %id)
AA824477 germinal center B cell .c 3575 to 3984 413 to 4       410/413
(99 %)
0 diff
(100 %id)
BM127285 Islets of Langerhans, Pancreas .c 3588 to 3978 391 to 1       391/391
(100 %)
0 diff
(100 %id)
AA830758 germinal center B cell .c 3595 to 3984 387 to 4       384/396
(96 %)
0 diff
(100 %id)
N24797 melanocyte .c 3606 to 3980 377 to 1       377/377
(100 %)
2 diff
(99.5 %id)
AA565017 normal prostate, Prostate .c 3613 to 3978 366 to 1       366/366
(100 %)
0 diff
(100 %id)
H53632 ovarian tumor, ovary .c 3617 to 3961 346 to 1       346/346
(100 %)
1 diff
(99.8 %id)
N91284 parathyroid gland, parathyroid tumor .c 3621 to 3978 362 to 3       360/363
(99 %)
0 diff
(100 %id)
AW886657 ovary .c 3630 to 3847 222 to 4       219/227
(96 %)
0 diff
(100 %id)
AA343467 gall bladder .c 3645 to 3980 337 to 1       337/337
(100 %)
2 diff
(99.5 %id)
R76909 placenta .c 3650 to 3972 325 to 1   fully sequenced,   325/325
(100 %)
3 diff
(99.1 %id)
AW886959 ovary .c 3656 to 3847 1 to 192       192/195
(98 %)
5 diff
(97.5 %id)
AA806159 germinal center B cell .c 3676 to 3984 312 to 4       309/312
(99 %)
0 diff
(100 %id)
AA620521 lung, lung carcinoma .c 3682 to 3984 303 to 1       303/303
(100 %)
2 diff
(99.4 %id)
BM986795 mixed .c 3698 to 3979 300 to 19   AAA   282/286
(98 %)
4 diff
(98.7 %id)
AA489049 germinal center B cell .c 3700 to 3978 305 to 27   fully sequenced, AAA   279/279
(100 %)
0 diff
(100 %id)
AI401706 Prostate .c 3826 to 3978 166 to 14   AAA   153/153
(100 %)
0 diff
(100 %id)
AI719302 aorta .c 3945 to 4420 476 to 1   tiling clone,   476/476
(100 %)
0 diff
(100 %id)
AY340967 Spleen .d 1 to 1751 1 to 1751 exact tiling clone,   1751/1751
(100 %)
1 diff
(100.0 %id)
DA440040 tongue, tumor tissue .d 1 to 580 2 to 583   capped   582/582
(100 %)
3 diff
(99.5 %id)
AY340966 Spleen .e 1 to 1703 1 to 1703 exact tiling clone,   1703/1703
(100 %)
1 diff
(100.0 %id)
NM_001145256.1   .f 1 to 4195 1 to 4195 exact RefSeq, AAA   4195/4195
(100 %)
0 diff
(100 %id)
AY340965 Spleen .f 18 to 1555 1 to 1538 exact tiling clone,   1538/1538
(100 %)
1 diff
(100.0 %id)
DC347759 tongue, tumor tissue .f 32 to 599 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DC406242 thymus .f 36 to 611 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
DC371648   .f 37 to 602 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
NM_001145257.1   .g 1 to 4147 1 to 4147 exact RefSeq, AAA   4147/4147
(100 %)
0 diff
(100 %id)
AK299944 brain .g 4 to 1354 1 to 1351 exact tiling clone,   1351/1351
(100 %)
3 diff
(99.8 %id)
DC378033 brain .g 4 to 560 1 to 557       557/557
(100 %)
3 diff
(99.5 %id)
AY340964 Spleen .g 18 to 1507 1 to 1490 exact tiling clone,   1490/1490
(100 %)
1 diff
(100.0 %id)
BF238344 bone marrow, from chronic myelogenous leukemia .g 18 to 580 1 to 576       574/576
(99 %)
30 diff
(94.8 %id)
DC327886 caudate nucleus .g 22 to 584 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
AA114228 brain, neuroepithelial cells .g 22 to 306 1 to 284       284/284
(100 %)
3 diff
(99.0 %id)
DC331985 hippocampus .g 24 to 587 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC352042 brain .g 24 to 610 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DC419971 uterus .g 25 to 510 1 to 485       485/492
(98 %)
4 diff
(99.2 %id)
DC303570 cerebellum .g 29 to 611 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DC313510 amygdala .g 37 to 629 1 to 593       593/593
(100 %)
0 diff
(100 %id)
DC315081 amygdala .g 37 to 620 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
CD654941 Embryonic Stem cells .g 40 to 775 12 to 747       736/753
(97 %)
22 diff
(97.1 %id)
BF687921 brain, glioblastoma .g 47 to 587 1 to 536       536/858
(62 %)
19 diff
(97.8 %id)
DA454638 tongue, tumor tissue .g 52 to 615 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DN996088 breast cancer, Mammary gland (cancer tissue) .g 55 to 667 9 to 621       613/621
(98 %)
6 diff
(99.1 %id)
AA114131 brain, neuroepithelial cells .g 2104 to 2692 605 to 3   tiling clone,   603/605
(99 %)
0 diff
(100 %id)
AK027301 whole embryo, mainly head .h 1 to 1757 25 to 1781 exact tiling clone, available from FLJ,   1757/1781
(98 %)
7 diff
(99.7 %id)
DA569653 whole embryo, mainly head .h 1 to 565 25 to 590   capped   566/589
(96 %)
5 diff
(99.2 %id)
BE388697 endometrium, adenocarcinoma cell line, uterus .h 26 to 653 1 to 627       627/628
(99 %)
5 diff
(99.3 %id)
DA370117 subthalamic nucleus .h 48 to 608 2 to 568   capped   567/567
(100 %)
7 diff
(98.8 %id)
FN110997 breast carcinoma .h 58 to 177 121 to 1     Submitted on the opposite strand 121/121
(100 %)
8 diff
(93.4 %id)
DB356338 whole embryo, mainly head .h 1202 to 1757 556 to 1       556/577
(96 %)
10 diff
(98.3 %id)
CV574178 cornea, eye .i 1 to 626 1 to 626   tiling clone,   626/626
(100 %)
0 diff
(100 %id)
DA373286 thalamus .i 351 to 906 2 to 556   tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DA329614 hippocampus .j 1 to 550 2 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
BX644130   .j 177 to 757 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
BX112346 B-cell, chronic lymphotic leukemia .j 303 to 704 1 to 402       402/406
(99 %)
1 diff
(99.8 %id)
BF989359 placenta_normal .j 589 to 871 283 to 1       283/296
(95 %)
5 diff
(98.4 %id)
AI439532 B-cell, chronic lymphotic leukemia .j 735 to 1172 438 to 1   tiling clone,   438/438
(100 %)
0 diff
(100 %id)
DB309578 hippocampus .j 1866 to 2421 557 to 1 L131V L132I L133A D134R I135Y ... tiling clone,   557/557
(100 %)
1 diff
(99.9 %id)
CF596589 ovary .k 1 to 711 1 to 719   tiling clone,   719/783
(91 %)
17 diff
(97.9 %id)
DA662025   .k 33 to 578 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BF694134 muscle (skeletal) .k 329 to 1006 1 to 677 L13X F127L G128W L129P A130L ... tiling clone,   677/682
(99 %)
14 diff
(98.0 %id)
CA775101 Pancreas, Purified pancreatic islet .l-u 1 to 775 1 to 775 exact tiling clone,   775/775
(100 %)
1 diff
(99.9 %id)
CK902841 Pancreas, Purified pancreatic islet .l-u 23 to 592 1 to 570     Submitted on the opposite strand 570/570
(100 %)
0 diff
(100 %id)
CA774834 Pancreas, Purified pancreatic islet .l-u 36 to 782 747 to 1 exact tiling clone,   747/747
(100 %)
0 diff
(100 %id)
DC399189 testis .m 1 to 563 1 to 563   tiling clone,   563/563
(100 %)
0 diff
(100 %id)
BG696775 skin .m 516 to 1230 1 to 715   tiling clone,   715/715
(100 %)
0 diff
(100 %id)
BF372535 prostate_tumor .m 723 to 951 4 to 231       228/237
(96 %)
4 diff
(98.4 %id)
DA290809 hippocampus .n 1 to 589 2 to 591 exact tiling clone, capped   590/590
(100 %)
1 diff
(99.9 %id)
DB134758 thymus .o 1 to 546 2 to 548 exact tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
AL699213 human skeletal muscle .p 1 to 541 1 to 540 exact tiling clone,   540/540
(100 %)
2 diff
(99.7 %id)
BE160597 head_neck Gene IRAK4, variant not shown         This clone was ignored    
BQ316428 colon Gene IRAK4, variant not shown         Suspected internal deletion, this clone was ignored    
AW007768 thymus, pooled Gene IRAK4, variant not shown         Suspected internal deletion, this clone was ignored    
CK000504 mixed Gene IRAK4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o, .p Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI