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Gene IQSEC3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
68 supporting clones for gene IQSEC3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001170738.1   .a 1 to 6976 1 to 6976 exact RefSeq,   6976/6976
(100 %)
0 diff
(100 %id)
BC042067 Brain, hippocampus .a 155 to 1322 1 to 1168   tiling clone, available from MGC,   1168/1168
(100 %)
1 diff
(100.0 %id)
BM545541 brain, hippocampus .a 155 to 763 8 to 616   available from MGC,   609/1084
(56 %)
8 diff
(99.3 %id)
BI712605 Pancreas, Purified pancreatic islet .a 306 to 718 19 to 435       417/435
(95 %)
7 diff
(98.4 %id)
CK820829 Pancreas, Purified pancreatic islet .a 363 to 725 1 to 363     Submitted on the opposite strand 363/363
(100 %)
1 diff
(99.8 %id)
CK820830 Pancreas, Purified pancreatic islet .a 697 to 1311 615 to 1     Submitted on the opposite strand 615/615
(100 %)
2 diff
(99.7 %id)
BI712372 Pancreas, Purified pancreatic islet .a 805 to 1331 529 to 2   tiling clone,   528/529
(99 %)
2 diff
(99.7 %id)
BF508103   .a 1143 to 1330 188 to 1       188/188
(100 %)
1 diff
(99.5 %id)
AI568606 anaplastic oligodendroglioma, brain .a 1363 to 1841 1 to 479   tiling clone, Submitted on the opposite strand 479/479
(100 %)
6 diff
(98.8 %id)
CN427302 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3229 to 3838 1 to 610   tiling clone,   610/610
(100 %)
2 diff
(99.7 %id)
DB473905.
matches multiple genes
hippocampus .a 3298 to 3772 1 to 473     also hits gene snychaw 473/473
(100 %)
8 diff
(98.4 %id)
AW452789   .a 3308 to 3692 402 to 18   tiling clone, AAA   385/385
(100 %)
2 diff
(99.5 %id)
AA323964 brain, cerebellum .a 3577 to 3885 1 to 311   tiling clone,   311/311
(100 %)
3 diff
(99.1 %id)
BU150826 dorsal root ganglia .a 4432 to 5243 94 to 919   tiling clone,   826/1028
(80 %)
39 diff
(96.3 %id)
R86862 brain .a 4634 to 5019 1 to 391   tiling clone,   391/420
(93 %)
8 diff
(98.1 %id)
AA326005 brain, cerebellum .a 4767 to 5041 1 to 275       275/275
(100 %)
1 diff
(99.7 %id)
BM926098 brain .a 4820 to 5719 6 to 918   tiling clone,   913/1127
(81 %)
6 diff
(99.5 %id)
CA407024 adipose .a 5098 to 5360 262 to 1     Submitted on the opposite strand 262/262
(100 %)
1 diff
(99.7 %id)
W01418 lung .a 5170 to 5552 1 to 392       392/442
(88 %)
16 diff
(96.4 %id)
BU948880 Pancreas, Purified pancreatic islet .a 5308 to 5826 11 to 529   tiling clone,   519/529
(98 %)
6 diff
(98.9 %id)
R89698 brain .a 5598 to 5979 1 to 384   tiling clone,   384/384
(100 %)
9 diff
(97.7 %id)
R89702 brain .a 5598 to 6055 1 to 456       456/458
(99 %)
23 diff
(95.0 %id)
Z44030 brain, total brain .a 5718 to 6019 1 to 301       301/301
(100 %)
2 diff
(99.4 %id)
F06977 brain, total brain .a 5718 to 6015 1 to 297       297/297
(100 %)
1 diff
(99.7 %id)
Z45476 brain, total brain .a 5918 to 6189 1 to 272       272/272
(100 %)
0 diff
(100 %id)
R21346 whole brain .a 5920 to 6265 1 to 350       350/351
(99 %)
19 diff
(94.6 %id)
BM691985 eye, human retina .a 5934 to 6439 9 to 514   tiling clone, fully sequenced,   506/514
(98 %)
6 diff
(98.9 %id)
CN427303 embryonic stem cells, cell lines H1, H7, andH9 .a 6005 to 6279 1 to 275       275/275
(100 %)
0 diff
(100 %id)
CK002880 brain/CNS, Human Brain - Cerebellar Cortex .a 6089 to 6780 1 to 692       692/695
(99 %)
9 diff
(98.8 %id)
BM689320 eye, optic nerve .a 6228 to 6723 9 to 504   tiling clone,   496/505
(98 %)
2 diff
(99.7 %id)
AA058388 uterus .a 6234 to 6525 1 to 290   fully sequenced,   290/290
(100 %)
6 diff
(98.0 %id)
TI_151765014   .a 6280 to 6950 101 to 777       677/1192
(56 %)
15 diff
(98.8 %id)
BM668274 eye, Retina Foveal and Macular .a 6303 to 6970 686 to 19   AAA   668/668
(100 %)
2 diff
(99.8 %id)
AW905870 nervous_normal .a 6359 to 6712 6 to 354       349/377
(92 %)
4 diff
(99.0 %id)
BU728476 eye, human retina .a 6421 to 6970 566 to 19   fully sequenced, AAA   548/548
(100 %)
1 diff
(99.9 %id)
AI589565 anaplastic oligodendroglioma, brain .a 6443 to 6971 527 to 1       527/527
(100 %)
1 diff
(99.9 %id)
AI568440 anaplastic oligodendroglioma, brain .a 6463 to 6970 505 to 1       505/505
(100 %)
4 diff
(99.3 %id)
TI_151738993   .a 6463 to 6976 721 to 201   AAA   521/1258
(41 %)
0 diff
(100 %id)
R89053 brain .a 6475 to 6898 429 to 1       429/437
(98 %)
22 diff
(95.0 %id)
N70811 lung .a 6492 to 6971 480 to 1       480/480
(100 %)
8 diff
(98.4 %id)
AA056734 uterus .a 6495 to 6976 485 to 1   fully sequenced,   485/485
(100 %)
8 diff
(98.4 %id)
BU948629 Pancreas, Purified pancreatic islet .a 6496 to 6971 479 to 4       476/479
(99 %)
0 diff
(100 %id)
AI925585 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 6504 to 6970 463 to 1       463/463
(100 %)
2 diff
(99.6 %id)
BX118694 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 6524 to 6970 457 to 15   AAA   443/443
(100 %)
2 diff
(99.6 %id)
F30730 pectoral muscle (after mastectomy) .a 6534 to 6914 1 to 382       382/382
(100 %)
5 diff
(98.7 %id)
AI209192   .a 6549 to 6971 426 to 4   tiling clone,   423/426
(99 %)
0 diff
(100 %id)
F36555 pectoral muscle (after mastectomy) .a 6560 to 6950 1 to 391       391/391
(100 %)
5 diff
(98.8 %id)
R89049 brain .a 6576 to 6898 328 to 1       328/333
(98 %)
19 diff
(94.3 %id)
AI381297   .a 6627 to 6970 344 to 1       344/344
(100 %)
2 diff
(99.5 %id)
Z40079 brain, total brain .a 6654 to 6970 317 to 1       317/317
(100 %)
2 diff
(99.4 %id)
R46392 whole brain .a 6667 to 6970 328 to 25   AAA   304/304
(100 %)
1 diff
(99.7 %id)
BM716776 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6672 to 6970 1 to 299   AAA   299/299
(100 %)
0 diff
(100 %id)
AI475100 anaplastic oligodendroglioma, brain .a 6680 to 6970 289 to 1       289/289
(100 %)
3 diff
(99.0 %id)
F04342 brain, total brain .a 6698 to 6970 273 to 1       273/273
(100 %)
0 diff
(100 %id)
AI928592 anaplastic oligodendroglioma, brain .a 6711 to 6970 259 to 1       259/259
(100 %)
2 diff
(99.3 %id)
T34925 brain .a 6794 to 6970 1 to 177   AAA   177/177
(100 %)
1 diff
(99.5 %id)
AW959830   .a 6795 to 6970 1 to 176   AAA   176/176
(100 %)
1 diff
(99.5 %id)
AI334837 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 6813 to 6976 166 to 3       164/166
(98 %)
0 diff
(100 %id)
AA351364 brain .b 1 to 332 1 to 332   tiling clone,   332/332
(100 %)
1 diff
(99.7 %id)
H19138 whole brain .b 2 to 369 1 to 369   tiling clone,   369/369
(100 %)
1 diff
(99.8 %id)
R12960 whole brain .b 133 to 421 1 to 292       292/293
(99 %)
4 diff
(98.7 %id)
AK091953 Kidney .b 363 to 3061 1 to 2699 E94K A173T Q211H tiling clone, available from FLJ,   2699/2699
(100 %)
4 diff
(99.9 %id)
AX747275   .b 363 to 3061 1 to 2699 E94K A173T Q211H     2699/2699
(100 %)
4 diff
(99.9 %id)
NM_015232.1   .b 363 to 3061 1 to 2699 exact RefSeq,   2699/2699
(100 %)
0 diff
(100 %id)
DA634181 Kidney .b 364 to 946 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB320960 Kidney .b 2539 to 3061 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
AI659569 Prostate .b 2821 to 3061 251 to 11   AAA   241/241
(100 %)
0 diff
(100 %id)
AI598046 adenocarcinoma, Pancreas .b 2855 to 3061 246 to 40   AAA   207/207
(100 %)
9 diff
(95.7 %id)
DB097368 testis .c 1 to 581 2 to 583   tiling clone, capped   582/582
(100 %)
3 diff
(99.5 %id)
DB341831 testis .c 1261 to 1799 539 to 1   tiling clone,   539/539
(100 %)
1 diff
(99.9 %id)
BC024764 Brain, anaplastic oligodendroglioma with1p/19q loss .d-u 1 to 2735 1 to 2735 T70S tiling clone, available from MGC,   2735/2764
(98 %)
2 diff
(100.0 %id)
N73382   .e 1 to 398 1 to 398 C28X T42X tiling clone,   398/398
(100 %)
1 diff
(99.8 %id)
DB059356 testis .f 1 to 491 2 to 493   tiling clone, to resequence, capped   492/492
(100 %)
2 diff
(99.6 %id)
DB339120 testis .f 1273 to 1798 526 to 1 exact tiling clone, to resequence,   526/526
(100 %)
1 diff
(99.9 %id)
AB029033 brain Gene IQSEC3, variant not shown       available from KIAA, Suspected internal deletion, this clone was ignored    
BI011895 lung_normal Gene IQSEC3, variant not shown         This clone was ignored    
R18485 whole brain Gene IQSEC3, variant not shown         Suspected internal deletion, this clone was ignored    
R41334 whole brain Gene IQSEC3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
R87221 brain Gene IQSEC3, variant not shown         This clone was ignored    
AA897565 pooled Gene IQSEC3, variant not shown         Suspected internal deletion, this clone was ignored    
AI383465 pooled Gene IQSEC3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C