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Gene INO80TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
242 supporting clones for gene INO80 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB458576 testis .a 1 to 478 1 to 477   tiling clone,   477/480
(99 %)
3 diff
(99.4 %id)
BC012578 Prostate .a 109 to 1063 5 to 959   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 955/968
(98 %)
6 diff
(99.4 %id)
DR003393 fetal brain .a 139 to 842 1 to 704       704/704
(100 %)
5 diff
(99.3 %id)
BC146785 Clones donated by Kazusa DNA Research Inst. .a 201 to 6192 1 to 5991 exact tiling clone, AAA   5991/5991
(100 %)
8 diff
(99.9 %id)
AB033085 brain .a 213 to 6192 1 to 5979 exact tiling clone, available from KIAA,   5979/5979
(100 %)
2 diff
(100.0 %id)
TI_2194695899   .a 216 to 1293 77 to 1143       1067/1313
(81 %)
27 diff
(98.0 %id)
TI_2194697865   .a 216 to 1088 884 to 13       872/1285
(67 %)
5 diff
(99.7 %id)
TI_2194699177   .a 216 to 1290 77 to 1132       1056/1271
(83 %)
20 diff
(98.5 %id)
AL704356 human skeletal muscle .a 356 to 875 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
AK290371 tongue, tumor tissue .a 371 to 4346 1 to 3976       3976/3976
(100 %)
1 diff
(100.0 %id)
DA459420 tongue, tumor tissue .a 372 to 949 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
CB959536 Human Placenta, placenta .a 381 to 1075 45 to 741       697/805
(86 %)
22 diff
(97.3 %id)
CB988248 Human Placenta, placenta .a 381 to 960 45 to 627       583/815
(71 %)
21 diff
(97.5 %id)
TI_2194697892   .a 439 to 1560 1122 to 14       1109/1266
(87 %)
18 diff
(98.6 %id)
BX503971   .a 470 to 1000 1 to 531       531/531
(100 %)
1 diff
(99.9 %id)
DA222149 brain .a 605 to 1164 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BM193234 leukopheresis .a 629 to 1098 1 to 471       470/472
(99 %)
6 diff
(98.8 %id)
BM152751 leukopheresis .a 629 to 1169 1 to 541       541/541
(100 %)
11 diff
(98.0 %id)
TI_2194697884   .a 652 to 1860 1217 to 12       1206/1313
(91 %)
23 diff
(98.3 %id)
TI_2194697873   .a 653 to 1819 1 to 1163       1163/1289
(90 %)
22 diff
(98.3 %id)
BX504669   .a 952 to 1552 1 to 601       601/601
(100 %)
0 diff
(100 %id)
BE173029 head_neck .a 961 to 1071 112 to 1     Submitted on the opposite strand 112/117
(95 %)
0 diff
(100 %id)
TI_2194697868   .a 964 to 2031 1098 to 35       1064/1287
(82 %)
5 diff
(99.7 %id)
DA508647 brain .a 976 to 1517 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BQ311332 breast_normal .a 1037 to 1443 429 to 16       414/452
(91 %)
23 diff
(95.0 %id)
CF135862 lymph .a 1083 to 1807 8 to 725       718/725
(99 %)
12 diff
(98.4 %id)
TI_154164492   .a 1083 to 1816 77 to 801       725/890
(81 %)
13 diff
(98.6 %id)
BF752105 breast_normal .a 1161 to 1341 194 to 15     Submitted on the opposite strand 180/198
(90 %)
1 diff
(99.5 %id)
DA448636 tongue, tumor tissue .a 1232 to 1787 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
TI_2194697847   .a 1236 to 2279 1 to 1040       1040/1266
(82 %)
17 diff
(98.7 %id)
TI_2194697874   .a 1351 to 2504 1181 to 27       1155/1319
(87 %)
32 diff
(97.6 %id)
CN347148 embryonic stem cells, cell lines H1, H7, andH9 .a 1571 to 2169 1 to 599       599/599
(100 %)
0 diff
(100 %id)
DA460316 tongue, tumor tissue .a 1591 to 2152 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DR002116 fetal brain .a 1619 to 2245 1 to 626       626/627
(99 %)
4 diff
(99.4 %id)
TI_2194697862   .a 1695 to 2921 1215 to 11       1160/1295
(89 %)
21 diff
(98.4 %id)
DA504063 brain .a 1763 to 2316 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BE293191 adenocarcinoma cell line, colon .a 1764 to 2408 31 to 675       645/744
(86 %)
13 diff
(98.3 %id)
BQ316535 colon .a 1791 to 2402 1 to 608       608/631
(96 %)
29 diff
(95.5 %id)
DB098569 testis .a 1826 to 2304 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DB213201 trachea .a 1836 to 2389 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
AK057582 thymus .a 1844 to 4341 1 to 2498   available from FLJ,   2498/2498
(100 %)
2 diff
(100.0 %id)
DB101172 thymus .a 1845 to 2372 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
BQ363851 stomach .a 1891 to 2504 1 to 614       614/666
(92 %)
17 diff
(97.5 %id)
BQ363036 stomach .a 1899 to 2500 24 to 620       597/622
(95 %)
14 diff
(97.8 %id)
AW500769 lymph .a 1953 to 2403 8 to 458       451/458
(98 %)
10 diff
(97.9 %id)
TI_154155040   .a 1953 to 2495 80 to 622       543/551
(98 %)
12 diff
(97.9 %id)
TI_2194697866   .a 1956 to 3126 1164 to 9       1156/1278
(90 %)
25 diff
(98.1 %id)
DA327917 hippocampus .a 1966 to 2479 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
AW501585 lymph .a 1968 to 2390 1 to 423       423/423
(100 %)
5 diff
(98.9 %id)
AW501657 lymph .a 1968 to 2238 1 to 271       271/271
(100 %)
18 diff
(93.4 %id)
TI_154156614   .a 1975 to 2488 81 to 593       513/573
(89 %)
13 diff
(97.8 %id)
DA920987 small intestine .a 2024 to 2576 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AW882674 ovary .a 2034 to 2175 1 to 142       142/150
(94 %)
7 diff
(95.4 %id)
EC498049 Prostate .a 2059 to 2142 83 to 1       83/87
(95 %)
2 diff
(97.8 %id)
BE710466 head_neck .a 2106 to 2312 49 to 267       229/269
(85 %)
70 diff
(74.0 %id)
DA475357   .a 2254 to 2809 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
TI_2194697855   .a 2269 to 3383 18 to 1127       1109/1286
(86 %)
13 diff
(99.0 %id)
BX479072   .a 2344 to 2974 1 to 631       631/631
(100 %)
0 diff
(100 %id)
BM853162 Ascites, stomach .a 2388 to 2972 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
TI_154153957   .a 2407 to 3054 85 to 732       648/648
(100 %)
0 diff
(100 %id)
AW499869 lymph .a 2408 to 2974 9 to 575       569/575
(98 %)
6 diff
(99.0 %id)
TI_2194697871   .a 2467 to 3590 1132 to 19       1116/1266
(88 %)
15 diff
(98.9 %id)
TI_2194697893   .a 2494 to 3575 1094 to 15       1080/1273
(84 %)
2 diff
(99.9 %id)
EH342441   .a 2670 to 2748 1 to 79       79/79
(100 %)
0 diff
(100 %id)
BE784480 large cell carcinoma, lung .a 2679 to 3527 1 to 849       849/869
(97 %)
37 diff
(95.8 %id)
AK026050   .a 2759 to 4345 1 to 1587   available from FLJ, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1587/1600
(99 %)
8 diff
(99.5 %id)
AW500069 lymph .a 2759 to 3245 1 to 487       487/487
(100 %)
4 diff
(99.2 %id)
TI_154154170   .a 2766 to 3330 80 to 641       562/625
(89 %)
8 diff
(98.8 %id)
DA314387 hippocampus .a 2770 to 3347 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA105949 cerebellum .a 2888 to 3435 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB208775 trachea .a 3038 to 3541 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DB088971 testis .a 3123 to 3666 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BE779560 eye, retinoblastoma .a 3135 to 3787 1 to 657       659/839
(78 %)
18 diff
(97.9 %id)
CN401092 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3169 to 3542 1 to 375       375/375
(100 %)
1 diff
(99.8 %id)
DA128000 cerebellum .a 3265 to 3857 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
BG115431 duodenal adenocarcinoma, cell line, small intestine .a 3332 to 3997 1 to 665       665/942
(70 %)
13 diff
(98.7 %id)
BQ225120 epithelioid carcinoma, Pancreas .a 3337 to 4188 1 to 857       857/857
(100 %)
5 diff
(99.5 %id)
DA121431 cerebellum .a 3343 to 3857 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DB091462 testis .a 3349 to 3905 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BI199196 brain, neuroblastoma .a 3502 to 4345 1 to 847       845/862
(98 %)
9 diff
(99.0 %id)
BI198501 brain, neuroblastoma .a 3502 to 4161 1 to 668       668/987
(67 %)
15 diff
(98.5 %id)
BE382857 brain, neuroblastoma .a 3523 to 4219 1 to 696       696/728
(95 %)
8 diff
(99.0 %id)
BF972787 leiomyosarcoma cell line, uterus .a 3654 to 4347 1 to 693       693/801
(86 %)
3 diff
(99.7 %id)
AI628652 Kidney .a 3693 to 4343 651 to 1       651/657
(99 %)
8 diff
(98.8 %id)
BQ016456 lung, Metastatic Chondrosarcoma .a 3698 to 4346 664 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 649/664
(97 %)
0 diff
(100 %id)
BG256830 embryonal carcinoma, cell line, testis .a 3701 to 4343 1 to 652       652/757
(86 %)
10 diff
(98.7 %id)
BQ299764 bladder_tumor .a 3714 to 4076 1 to 362       362/362
(100 %)
8 diff
(97.8 %id)
AW439657 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 3729 to 4343 615 to 1       615/615
(100 %)
4 diff
(99.4 %id)
BG876730 head_neck .a 3737 to 4267 14 to 542       529/542
(97 %)
7 diff
(98.8 %id)
BG875922 colon .a 3754 to 4118 1 to 365       365/365
(100 %)
2 diff
(99.5 %id)
AI240800 liver and spleen .a 3826 to 4344 517 to 1       517/551
(93 %)
26 diff
(95.3 %id)
DB342364 thymus .a 3838 to 4341 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
TI_2194697869   .a 3848 to 5023 1178 to 16       1163/1270
(91 %)
16 diff
(98.8 %id)
DW409704 Liver .a 4023 to 4345 12 to 334       323/337
(95 %)
11 diff
(96.8 %id)
BM153384 leukopheresis .a 4024 to 4605 582 to 1       582/587
(99 %)
0 diff
(100 %id)
AW581909 stomach .a 4042 to 4328 11 to 300       290/307
(94 %)
13 diff
(95.8 %id)
DR979204 placenta .a 4044 to 4377 1 to 333   AAA Submitted on the opposite strand 333/339
(98 %)
8 diff
(97.7 %id)
AW370348 breast .a 4047 to 4321 1 to 274       274/274
(100 %)
6 diff
(97.9 %id)
AW370317 breast .a 4048 to 4295 249 to 5       245/278
(88 %)
11 diff
(96.1 %id)
BE076037 breast .a 4049 to 4251 33 to 236       204/236
(86 %)
6 diff
(97.5 %id)
AW370337 breast .a 4053 to 4292 239 to 1       239/248
(96 %)
8 diff
(96.8 %id)
AW370344 breast .a 4059 to 4293 247 to 14       234/247
(94 %)
1 diff
(99.6 %id)
CU448613 epidermis .a 4156 to 4325 179 to 10     Submitted on the opposite strand 170/190
(89 %)
1 diff
(99.5 %id)
CU454157 epidermis .a 4156 to 4325 179 to 10     Submitted on the opposite strand 170/190
(89 %)
1 diff
(99.5 %id)
TI_2194697870   .a 4168 to 5180 19 to 1027       1009/1332
(75 %)
31 diff
(97.7 %id)
BQ440856 melanotic melanoma, skin .a 4199 to 5052 1 to 867       867/870
(99 %)
15 diff
(98.3 %id)
BE001602 breast_normal .a 4206 to 4346 1 to 140       140/176
(79 %)
4 diff
(97.8 %id)
BQ430950 embryonal carcinoma, cell line, testis .a 4245 to 4990 1 to 754       754/885
(85 %)
27 diff
(97.0 %id)
AL530509 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 4253 to 5376 1 to 1124       1124/1125
(99 %)
37 diff
(96.8 %id)
BQ308961 breast .a 4261 to 4593 334 to 1       334/348
(95 %)
3 diff
(99.2 %id)
BE243526 leukopheresis .a 4286 to 4605 320 to 1       320/320
(100 %)
0 diff
(100 %id)
BE243478 leukopheresis .a 4287 to 4605 319 to 1       319/319
(100 %)
0 diff
(100 %id)
AW752847 colon .a 4309 to 4904 600 to 5       596/600
(99 %)
3 diff
(99.5 %id)
TI_2194697859   .a 4345 to 5396 1051 to 6       1046/1255
(83 %)
9 diff
(99.3 %id)
BE930724 placenta_normal .a 4345 to 4754 13 to 422       410/422
(97 %)
6 diff
(98.6 %id)
BF340537 brain, glioblastoma with EGFR amplification .a 4351 to 5107 1 to 749       749/852
(87 %)
14 diff
(98.4 %id)
DA598435   .a 4357 to 4929 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CV340061 breast .a 4390 to 4593 209 to 1     Submitted on the opposite strand 209/223
(93 %)
23 diff
(89.7 %id)
BE542135 cervix .a 4415 to 5011 1 to 601       601/857
(70 %)
12 diff
(98.6 %id)
BP872177 embryonal kidney .a 4464 to 5041 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
BE935906 nervous_normal .a 4480 to 5012 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BF991782 placenta_normal .a 4637 to 4869 15 to 244       230/247
(93 %)
16 diff
(93.6 %id)
CN347149 embryonic stem cells, cell lines H1, H7, andH9 .a 4644 to 5167 1 to 523       523/523
(100 %)
2 diff
(99.7 %id)
DB021901 testis .a 4649 to 5192 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
CF138382 lymph .a 4657 to 5116 1 to 462       464/462
(100 %)
5 diff
(99.0 %id)
AA100973 Pancreas .a 4658 to 5044 1 to 401     Submitted on the opposite strand 401/476
(84 %)
19 diff
(96.1 %id)
BX350023 Neuroblastoma Cot 50-normalized .a 4661 to 5442 782 to 1       782/945
(82 %)
31 diff
(96.8 %id)
TI_154168320   .a 4662 to 5292 80 to 721       642/875
(73 %)
16 diff
(98.2 %id)
TI_2194697886   .a 4668 to 5779 15 to 1123   tiling clone,   1109/1331
(83 %)
27 diff
(98.0 %id)
CR990318 T-Lymphocytes .a 4752 to 5604 1 to 853       853/859
(99 %)
5 diff
(99.5 %id)
BI859882.
matches multiple genes
breast, Breast, mammary adenocarcinoma., mammary adenocarcinoma, cell line .a 4773 to 5597 1 to 826   available from MGC, Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base), also hits gene CCT5 826/827
(99 %)
6 diff
(99.3 %id)
TI_57188778   .a 4773 to 5597 55 to 880       826/827
(99 %)
6 diff
(99.3 %id)
TI_2194695905   .a 4823 to 5853 1128 to 114       1015/1239
(81 %)
8 diff
(99.4 %id)
AW957485   .a 5207 to 5750 1 to 544       544/544
(100 %)
5 diff
(99.1 %id)
BG988687 head_neck .a 5212 to 5675 3 to 465       463/465
(99 %)
20 diff
(95.7 %id)
BF828029 head_normal .a 5216 to 5702 505 to 19     Submitted on the opposite strand 487/511
(95 %)
0 diff
(100 %id)
BF829356 head_normal .a 5216 to 5702 495 to 11     Submitted on the opposite strand 485/501
(96 %)
0 diff
(100 %id)
BG987196 head_neck .a 5227 to 5698 1 to 469       469/469
(100 %)
8 diff
(98.3 %id)
BE006414 breast_normal .a 5285 to 5838 548 to 1     Submitted on the opposite strand 548/549
(99 %)
10 diff
(98.2 %id)
BE815115 breast_normal .a 5285 to 5788 513 to 10       504/514
(98 %)
6 diff
(98.9 %id)
BG747174 adenocarcinoma cell line, colon .a 5324 to 5847 1 to 540   tiling clone, available from MGC,   540/543
(99 %)
7 diff
(98.8 %id)
BG821873 adenocarcinoma cell line, colon .a 5368 to 5749 54 to 440       387/440
(87 %)
6 diff
(98.7 %id)
NM_017553.1   .b 1 to 6224 1 to 6224 exact RefSeq, AAA   6224/6224
(100 %)
1 diff
(100.0 %id)
DA733484   .b 3095 to 3777 2 to 683   tiling clone, capped   682/684
(99 %)
10 diff
(98.6 %id)
AK002176 placenta .b 3733 to 6224 1 to 2491   tiling clone, available from FLJ,   2491/2491
(100 %)
3 diff
(99.9 %id)
AU139198 placenta .b 3734 to 4538 2 to 811   capped   810/810
(100 %)
12 diff
(98.6 %id)
AL137280 testis .b 4117 to 6224 1 to 2107   tiling clone, available from DKFZ, AAA   2107/2107
(100 %)
2 diff
(100.0 %id)
AU136487 placenta .b 4142 to 4832 2 to 700   capped   699/729
(95 %)
11 diff
(98.5 %id)
TI_2194699555   .b 4612 to 5641 1134 to 111       1024/1268
(80 %)
8 diff
(99.4 %id)
CN347151 embryonic stem cells, DMSO-treated H9 cellline .b 4650 to 5387 1 to 737       737/737
(100 %)
9 diff
(98.8 %id)
CN347152 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 4693 to 5228 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
CB155560 brain .b 4727 to 5259 1 to 533   tiling clone,   533/533
(100 %)
0 diff
(100 %id)
AI205336 brain, meningioma .b 4758 to 5204 1 to 464     Submitted on the opposite strand 464/464
(100 %)
14 diff
(97.0 %id)
W26842 eye, retina .b 4815 to 5288 496 to 20       477/548
(87 %)
0 diff
(100 %id)
AA100972 Pancreas .b 4846 to 5319 483 to 1     Submitted on the opposite strand 483/494
(97 %)
12 diff
(97.6 %id)
TI_2194697894   .b 4963 to 5641 14 to 692       679/1264
(53 %)
3 diff
(99.8 %id)
BC057299 Testis, embryonal carcinoma .b 4993 to 6224 1 to 1232   available from MGC, AAA   1232/1232
(100 %)
2 diff
(99.9 %id)
BG393817 embryonal carcinoma, cell line, testis .b 4993 to 5778 1 to 786   available from MGC,   786/786
(100 %)
16 diff
(98.0 %id)
AA374274 lung .b 4994 to 5146 1 to 153       153/153
(100 %)
0 diff
(100 %id)
BM728980 eye, fetal eye .b 5021 to 5666 1 to 645   fully sequenced,   645/645
(100 %)
1 diff
(99.9 %id)
BG674185 skin .b 5084 to 5957 1 to 874       874/950
(92 %)
19 diff
(98.0 %id)
BC105993 Skin, normal .b 5085 to 6220 1 to 1137   AAA   1137/1137
(100 %)
3 diff
(99.8 %id)
AK024777   .b 5091 to 6220 1 to 1130   available from FLJ, AAA   1130/1130
(100 %)
3 diff
(99.8 %id)
BP205718 coronary artery .b 5091 to 5669 1 to 580       580/580
(100 %)
6 diff
(99.0 %id)
BI259228 cervical carcinoma cell line, cervix .b 5092 to 5891 12 to 807   available from MGC,   796/807
(98 %)
6 diff
(99.3 %id)
BC046115 Cervix, carcinoma .b 5093 to 6220 1 to 1128   available from MGC, AAA   1128/1128
(100 %)
1 diff
(100.0 %id)
BC068054 Colon, adenocarcinoma .b 5113 to 6220 1 to 1108   available from MGC, AAA   1108/1108
(100 %)
2 diff
(99.9 %id)
BF507409   .b 5214 to 5370 175 to 19   AAA   157/167
(94 %)
0 diff
(100 %id)
H80961 liver and spleen .b 5222 to 5633 1 to 419       419/423
(99 %)
13 diff
(97.0 %id)
BM709034 eye, optic nerve .b 5474 to 5686 1 to 213   fully sequenced,   213/213
(100 %)
1 diff
(99.6 %id)
DB524078 testis .b 5517 to 6224 1 to 706     Submitted on the opposite strand 706/706
(100 %)
12 diff
(98.4 %id)
AW996508 breast_normal .b 5527 to 5965 439 to 1     Submitted on the opposite strand 439/439
(100 %)
3 diff
(99.4 %id)
CA426271 Bone, Subchondral Bone .b 5569 to 6224 674 to 19   AAA   656/656
(100 %)
1 diff
(99.9 %id)
BM681925 eye, fetal eye .b 5636 to 6220 598 to 19   fully sequenced, AAA   580/580
(100 %)
0 diff
(100 %id)
AU150544   .b 5644 to 6224 579 to 1       579/580
(99 %)
7 diff
(98.8 %id)
BF897788 marrow .b 5649 to 6067 1 to 420       420/420
(100 %)
6 diff
(98.6 %id)
BU732494 eye, optic nerve .b 5656 to 6224 587 to 19   fully sequenced, AAA   569/569
(100 %)
1 diff
(99.9 %id)
N57454 placenta .b 5660 to 5969 1 to 325   fully sequenced,   325/325
(100 %)
0 diff
(100 %id)
AU157921 placenta .b 5674 to 6224 548 to 1       548/588
(93 %)
16 diff
(97.3 %id)
DB375091 placenta .b 5693 to 6220 526 to 1       526/550
(95 %)
17 diff
(97.0 %id)
AW140142   .b 5725 to 6214 507 to 18   AAA   490/490
(100 %)
3 diff
(99.4 %id)
AA856607 Kidney .b 5741 to 6224 491 to 11   AAA   481/481
(100 %)
4 diff
(99.2 %id)
EC453198 Prostate .b 5754 to 5856 1 to 100       100/100
(100 %)
3 diff
(97.0 %id)
EC529578 Prostate .b 5754 to 5856 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
H80862 liver and spleen .b 5764 to 6216 481 to 19       463/485
(95 %)
0 diff
(100 %id)
AW474386 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 5768 to 6221 455 to 2       454/455
(99 %)
0 diff
(100 %id)
W46860 senescent fibroblast .b 5772 to 6227 461 to 3   tiling clone,   459/461
(99 %)
0 diff
(100 %id)
BF056755 pooled germ cell tumors .b 5772 to 6214 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
BF056300 pooled germ cell tumors .b 5773 to 6227 460 to 6       455/460
(98 %)
0 diff
(100 %id)
AI381608 B-cell, chronic lymphotic leukemia .b 5779 to 6227 455 to 7       449/455
(98 %)
0 diff
(100 %id)
AI343942 colon, colon tumor, RER+ .b 5785 to 6224 453 to 12   AAA   442/446
(99 %)
4 diff
(99.2 %id)
AW273111 colon, moderately-differentiated adenocarcinoma .b 5815 to 6224 422 to 13   AAA   410/410
(100 %)
2 diff
(99.6 %id)
AA929000 pooled .b 5819 to 6224 422 to 19   AAA   404/404
(100 %)
4 diff
(99.1 %id)
AA701928 liver and spleen .b 5847 to 6224 378 to 1       378/378
(100 %)
2 diff
(99.5 %id)
BU753936 placenta .b 5851 to 6221 388 to 18   AAA   371/371
(100 %)
2 diff
(99.5 %id)
AW589411 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 5862 to 6224 363 to 1       363/363
(100 %)
0 diff
(100 %id)
AI560090 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 5887 to 6227 341 to 1       341/341
(100 %)
0 diff
(100 %id)
AW206523   .b 5894 to 6214 336 to 16   AAA   321/331
(96 %)
0 diff
(100 %id)
BM766476 Ascites, stomach .b 5895 to 6184 1 to 290   AAA   290/290
(100 %)
0 diff
(100 %id)
AW802721 uterus .b 5898 to 6177 1 to 280       280/280
(100 %)
0 diff
(100 %id)
AW079545 colon, moderately differentiated adenocarcinoma .b 5914 to 6224 312 to 1       312/312
(100 %)
1 diff
(99.7 %id)
AA815104 germinal center B cell .b 5929 to 6220 332 to 41   AAA   292/292
(100 %)
0 diff
(100 %id)
N29511 placenta .b 5939 to 6224 290 to 1   fully sequenced,   290/290
(100 %)
0 diff
(100 %id)
AW873955 Pancreas .b 5954 to 6224 283 to 13   AAA   271/271
(100 %)
0 diff
(100 %id)
BE765567 nervous_tumor .b 5986 to 6174 17 to 205       189/205
(92 %)
7 diff
(96.6 %id)
AI804829 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 5992 to 6227 236 to 1       236/236
(100 %)
0 diff
(100 %id)
BE766125 nervous_tumor .b 5997 to 6176 1 to 180       180/180
(100 %)
0 diff
(100 %id)
BE766372 nervous_tumor .b 5997 to 6174 1 to 178       178/178
(100 %)
0 diff
(100 %id)
BC144681 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 5503 1 to 5503 exact tiling clone,   5503/5503
(100 %)
2 diff
(100.0 %id)
TI_2194697860   .c 2475 to 3656 1 to 1168       1168/1302
(89 %)
29 diff
(97.8 %id)
TI_2194697885   .c 2511 to 3715 1208 to 14       1195/1303
(91 %)
17 diff
(98.7 %id)
TI_2194697854   .c 2977 to 3996 4 to 1022       1019/1268
(80 %)
9 diff
(99.3 %id)
TI_2194697867   .c 3103 to 4185 1077 to 1       1077/1268
(84 %)
15 diff
(98.9 %id)
TI_2194697872   .c 3252 to 4058 846 to 37       810/848
(95 %)
11 diff
(98.8 %id)
R01451 liver and spleen .d 1 to 231 1 to 235   tiling clone,   235/342
(68 %)
9 diff
(97.4 %id)
R01452 liver and spleen .d 947 to 1338 401 to 1   tiling clone,   401/403
(99 %)
16 diff
(96.1 %id)
AA505914 breast .d 980 to 1348 369 to 1   tiling clone,   369/369
(100 %)
0 diff
(100 %id)
AW972552   .d 1021 to 1348 328 to 1     Submitted on the opposite strand 328/328
(100 %)
11 diff
(96.7 %id)
DA058075 cerebellum .e 1 to 579 2 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
CF265117 Brain glioblastoma .e 146 to 1025 1 to 885   tiling clone,   885/885
(100 %)
9 diff
(99.0 %id)
DB075694 testis .f 1 to 598 2 to 599 exact tiling clone, capped   598/598
(100 %)
2 diff
(99.7 %id)
DB096345 testis .g 1 to 532 2 to 533 Q146* tiling clone, capped   533/541
(98 %)
3 diff
(99.5 %id)
BQ216839 large cell carcinoma, lung .h 1 to 494 1 to 495 G47V Y48I Q49N L50* tiling clone,   495/966
(51 %)
22 diff
(97.8 %id)
BM805579 brain, hippocampus .i 1 to 948 13 to 966 L2G S3C I6* tiling clone,   954/1099
(86 %)
19 diff
(98.3 %id)
DA489836 brain .j 1 to 493 2 to 494 exact tiling clone, capped   493/493
(100 %)
0 diff
(100 %id)
BI011674 lung_normal .k-u 1 to 395 1 to 394   tiling clone,   394/394
(100 %)
5 diff
(98.8 %id)
BX476924   .k-u 360 to 756 1 to 397   tiling clone,   397/397
(100 %)
1 diff
(99.8 %id)
CV386278 lung_normal .k-u 691 to 1138 20 to 475   tiling clone,   456/475
(96 %)
6 diff
(98.8 %id)
AW860864 colon .k-u 866 to 1094 23 to 251   tiling clone,   229/251
(91 %)
6 diff
(97.7 %id)
BU661664 blood .l-u 1 to 670 1 to 670 exact tiling clone,   670/670
(100 %)
0 diff
(100 %id)
CB162390 Liver .m-u 1 to 593 1 to 593 exact tiling clone,   593/593
(100 %)
0 diff
(100 %id)
H01368 placenta .n-u 1 to 345 1 to 348 exact tiling clone, AAA   348/366
(95 %)
9 diff
(97.6 %id)
AW841941 colon_normal .o-u 1 to 212 1 to 211 exact tiling clone,   211/212
(99 %)
5 diff
(97.7 %id)
BX640651 cervix Gene INO80, variant not shown       available from DKFZ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
CN347150 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene INO80, variant not shown       AAA This clone was ignored    
AL563766 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized Gene INO80, variant not shown         This clone was ignored    
DB574274 hypothalamus Gene INO80, variant not shown         Submitted on the opposite strand    
H53977 liver and spleen Gene INO80, variant not shown         This clone was ignored    
H53978 liver and spleen Gene INO80, variant not shown         This clone was ignored    
AA287309 germinal center B cell Gene INO80, variant not shown         Suspected internal deletion, this clone was ignored    
AA287349 germinal center B cell Gene INO80, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AA602409 normal prostate, Prostate Gene INO80, variant not shown       AAA This clone was ignored    
AI015577 Kidney Gene INO80, variant not shown         This clone was ignored    
AI659419 Prostate Gene INO80, variant not shown         This clone was ignored    
AW190838 adenocarcinoma, Pancreas Gene INO80, variant not shown       AAA This clone was ignored    
DA721136   Gene INO80, variant not shown       capped This clone was ignored    
TI_149307394   Gene INO80, variant not shown       AAA This clone was ignored    
TI_227714724   Gene INO80, variant not shown       AAA This clone was ignored    
BQ012739 placenta Gene INO80, variant not shown       AAA This clone was ignored    
BQ011177 placenta Gene INO80, variant not shown       AAA This clone was ignored    
BM979189 lung, Primary Lung Epithelial Cells Gene INO80, variant not shown       AAA This clone was ignored    
CA310698 Human Lung Epithelial cells, lung Gene INO80, variant not shown       AAA This clone was ignored    
CD365356 Alveolar Macrophage, lung Gene INO80, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m-u, .n-u, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI