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Gene IL1R2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene IL1R2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD702232 normal nasopharynx .a 1 to 304 9 to 312       304/312
(97 %)
8 diff
(97.5 %id)
DC380050 placenta .a 3 to 550 1 to 550   tiling clone,   550/551
(99 %)
3 diff
(99.5 %id)
BF541797 hypernephroma, Kidney .a 14 to 691 1 to 671       671/847
(79 %)
22 diff
(97.5 %id)
DC380332 placenta .a 29 to 586 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BC027733 Colon, adenocarcinoma .a 36 to 910 1 to 875   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 875/884
(98 %)
4 diff
(99.6 %id)
CR616861 Placenta Cot 25-normalized .a 37 to 1390 1 to 1354   tiling clone,   1354/1354
(100 %)
0 diff
(100 %id)
AL547160 placenta, Placenta Cot 25-normalized .a 37 to 966 1 to 936       539/940
(57 %)
24 diff
(97.5 %id)
BX343679 Placenta Cot 25-normalized .a 37 to 1071 1 to 1026       1024/1046
(97 %)
23 diff
(97.9 %id)
BG326017 Kidney, renal cell adenocarcinoma .a 37 to 809 1 to 775   available from MGC,   741/1000
(74 %)
24 diff
(97.6 %id)
BC012346 Kidney, renal cell adenocarcinoma .a 38 to 1437 1 to 1401 E233R E234R T235D I236H P237S ... tiling clone, available from MGC, AAA   1401/1401
(100 %)
1 diff
(100.0 %id)
NM_173343.1   .a 38 to 1443 1 to 1406 exact RefSeq, AAA   1406/1406
(100 %)
0 diff
(100 %id)
H78484 liver and spleen .a 39 to 491 1 to 466       466/470
(99 %)
17 diff
(96.4 %id)
BX113594 liver and spleen .a 40 to 810 1 to 771       771/771
(100 %)
0 diff
(100 %id)
AA043950 uterus .a 43 to 463 1 to 428       380/428
(88 %)
11 diff
(97.5 %id)
BM792454 Ascites, stomach .a 44 to 753 1 to 710       710/710
(100 %)
2 diff
(99.8 %id)
BM823437 Ascites, stomach .a 45 to 698 1 to 654       654/654
(100 %)
1 diff
(99.9 %id)
CB157192 Liver .a 52 to 714 1 to 663       663/663
(100 %)
0 diff
(100 %id)
AA043963 uterus .a 485 to 902 423 to 1       423/430
(98 %)
8 diff
(98.2 %id)
H78386 liver and spleen .a 495 to 889 406 to 2       401/406
(98 %)
18 diff
(95.6 %id)
BU197117 ductal carcinoma, cell line, Pancreas .b 1 to 768 1 to 776       776/927
(83 %)
10 diff
(99.0 %id)
BQ688121 ductal carcinoma, cell line, Pancreas .b 1 to 856 1 to 854   tiling clone,   854/965
(88 %)
11 diff
(98.9 %id)
BQ689605 ductal carcinoma, cell line, Pancreas .b 1 to 386 1 to 388   AAA   388/797
(48 %)
3 diff
(99.7 %id)
BQ685045 ductal carcinoma, cell line, Pancreas .b 1 to 842 1 to 847   tiling clone,   847/849
(99 %)
11 diff
(98.8 %id)
CB049865 Prostate .b 790 to 1452 694 to 31   tiling clone, AAA   664/664
(100 %)
2 diff
(99.7 %id)
TI_154114088   .b 980 to 1452 568 to 96   tiling clone, AAA   473/473
(100 %)
0 diff
(100 %id)
CA448938 Chondrosarcoma, Left Pelvis .b 1001 to 1452 470 to 19   AAA   452/452
(100 %)
0 diff
(100 %id)
AA676878 whole brain .b 1133 to 1324 192 to 1       192/192
(100 %)
8 diff
(95.9 %id)
AI867567 pooled germ cell tumors .b 1141 to 1323 183 to 1       183/183
(100 %)
0 diff
(100 %id)
AW196698 pooled germ cell tumors .b 1141 to 1323 183 to 1       183/183
(100 %)
0 diff
(100 %id)
AW236977 pooled germ cell tumors .b 1141 to 1323 183 to 1       183/183
(100 %)
0 diff
(100 %id)
BG980754 colon_normal .b 1154 to 1332 1 to 181       181/187
(96 %)
7 diff
(96.3 %id)
BG983786 colon_normal .b 1166 to 1332 1 to 167       167/193
(86 %)
5 diff
(97.5 %id)
BG980560 colon_normal .b 1169 to 1325 159 to 4       156/159
(98 %)
0 diff
(100 %id)
AI969022 pooled germ cell tumors .b 1169 to 1322 152 to 1       152/152
(100 %)
2 diff
(98.7 %id)
BC039031 Ovary, pooled from 3 adults .c 1 to 1454 1 to 1454 exact tiling clone, available from MGC, AAA   1454/1454
(100 %)
0 diff
(100 %id)
BM546415 ovary (pool of 3) .c 1 to 921 20 to 943   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 924/1083
(85 %)
16 diff
(98.6 %id)
NM_004633.3   .c 1 to 1454 1 to 1454 exact RefSeq, AAA   1454/1454
(100 %)
0 diff
(100 %id)
AK130412 rectum .c 117 to 1448 1 to 1332 exact available from FLJ,   1332/1332
(100 %)
0 diff
(100 %id)
AU105506   .c 117 to 166 1 to 50       50/50
(100 %)
1 diff
(98.0 %id)
AU099372   .c 117 to 416 1 to 300       300/300
(100 %)
0 diff
(100 %id)
AU105507   .c 117 to 166 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP328620 rectum .c 117 to 560 1 to 444       444/532
(83 %)
3 diff
(99.5 %id)
TI_57151287   .c 125 to 885 38 to 802       765/800
(95 %)
11 diff
(98.7 %id)
BI762231 pooled colon, kidney, stomach .c 126 to 885 1 to 764       764/769
(99 %)
5 diff
(99.4 %id)
BG675373 skin .c 132 to 921 1 to 791       791/947
(83 %)
13 diff
(98.7 %id)
X59770   .c 169 to 1454 1 to 1286 exact AAA   1286/1286
(100 %)
0 diff
(100 %id)
T98563 liver and spleen .c 174 to 297 1 to 126       126/131
(96 %)
6 diff
(95.5 %id)
U74649   .c 195 to 1457 1 to 1263 L123F K171R L199Q     1263/1264
(99 %)
9 diff
(99.3 %id)
TI_1948156401   .c 223 to 773 125 to 675   fully sequenced,   551/675
(81 %)
6 diff
(99.2 %id)
TI_1948156572   .c 223 to 773 125 to 675   fully sequenced,   551/675
(81 %)
10 diff
(98.6 %id)
TI_1948156752   .c 223 to 949 124 to 851   fully sequenced,   728/851
(85 %)
7 diff
(99.2 %id)
TI_1948156928   .c 223 to 949 122 to 846   fully sequenced,   725/846
(85 %)
7 diff
(99.2 %id)
EL733762 mixed .c 230 to 875 1 to 646       646/655
(98 %)
0 diff
(100 %id)
AA872605 Kidney .c 296 to 917 625 to 7       619/1061
(58 %)
18 diff
(98.4 %id)
BI023048 marrow .c 370 to 774 14 to 417       400/417
(95 %)
8 diff
(98.1 %id)
BQ084106 stomach .c 441 to 724 1 to 284       284/284
(100 %)
0 diff
(100 %id)
BQ083898 stomach .c 441 to 709 1 to 269       269/269
(100 %)
1 diff
(99.7 %id)
BM818946 stomach .c 441 to 870 1 to 430       430/430
(100 %)
5 diff
(98.9 %id)
AW844988 colon .c 489 to 808 1 to 320       320/320
(100 %)
1 diff
(99.7 %id)
AW844971 colon .c 493 to 842 1 to 350       350/350
(100 %)
1 diff
(99.8 %id)
AW051744 Kidney .c 622 to 1454 831 to 1       831/831
(100 %)
30 diff
(96.4 %id)
TI_154124639   .c 679 to 1448 842 to 78   AAA   765/973
(78 %)
12 diff
(98.8 %id)
AI283809 adenocarcinoma, colon .c 686 to 1454 762 to 1       714/762
(93 %)
26 diff
(96.6 %id)
CA307537 Alveolar Macrophage, lung .c 689 to 1448 776 to 19   AAA   758/758
(100 %)
8 diff
(99.0 %id)
BU631559 cell lines, Chondrosarcoma .c 710 to 1448 751 to 19   AAA   735/733
(100 %)
8 diff
(99.0 %id)
TI_1948156402   .c 712 to 1425 840 to 126   fully sequenced,   715/840
(85 %)
0 diff
(100 %id)
TI_1948156573   .c 712 to 1425 841 to 127   fully sequenced,   715/841
(85 %)
0 diff
(100 %id)
R39643 placenta .c 728 to 1048 1 to 332       331/346
(95 %)
18 diff
(94.8 %id)
CA415786 Chondrosarcoma Cell line .c 757 to 1448 708 to 19   AAA   690/690
(100 %)
4 diff
(99.5 %id)
BF086940 head_neck .c 766 to 1222 461 to 7       455/461
(98 %)
3 diff
(99.4 %id)
AW806594 stomach .c 773 to 953 1 to 181       181/181
(100 %)
1 diff
(99.5 %id)
BF825481 head_normal .c 801 to 1071 1 to 271       271/271
(100 %)
6 diff
(97.8 %id)
AW378701 head_neck .c 819 to 1219 404 to 1       350/404
(86 %)
16 diff
(96.1 %id)
AI609612 normal gingiva (cell line from immortalizedkeratinocytes) .c 871 to 1454 582 to 1       582/582
(100 %)
1 diff
(99.9 %id)
TI_1948156753   .c 887 to 1425 666 to 128   fully sequenced,   539/666
(80 %)
0 diff
(100 %id)
TI_1948156929   .c 887 to 1425 664 to 126   fully sequenced,   539/664
(81 %)
0 diff
(100 %id)
AA031415 uterus .c 901 to 1063 17 to 179   fully sequenced,   163/179
(91 %)
6 diff
(96.7 %id)
BG230716 blood, lymphocyte .c 912 to 1453 542 to 1       542/546
(99 %)
8 diff
(98.6 %id)
AA932308 Kidney .c 918 to 1451 532 to 1       532/532
(100 %)
3 diff
(99.5 %id)
BF155978 head_neck .c 973 to 1328 357 to 4       354/357
(99 %)
1 diff
(99.8 %id)
BQ354060 head_neck .c 973 to 1320 352 to 7       346/352
(98 %)
0 diff
(100 %id)
BQ354062 head_neck .c 973 to 1306 338 to 5       334/338
(98 %)
2 diff
(99.5 %id)
AW294028   .c 974 to 1448 492 to 18   AAA   475/477
(99 %)
5 diff
(99.0 %id)
AA994135 pooled .c 980 to 1304 320 to 1       320/348
(91 %)
11 diff
(96.9 %id)
AI217269   .c 993 to 1451 462 to 4       459/465
(98 %)
18 diff
(96.2 %id)
AA970046 pooled .c 1014 to 1447 432 to 1       432/435
(99 %)
10 diff
(97.8 %id)
AA031292 uterus .c 1033 to 1451 429 to 4   fully sequenced,   426/429
(99 %)
10 diff
(97.7 %id)
R39575 placenta .c 1121 to 1449 337 to 1       337/337
(100 %)
10 diff
(97.1 %id)
CA306304 Alveolar Macrophage, lung .c 1164 to 1448 303 to 19   AAA   285/285
(100 %)
0 diff
(100 %id)
U64094   .d 1 to 1036 1 to 1036 exact tiling clone,   1036/1037
(99 %)
1 diff
(100.0 %id)
BG674113 skin .e 1 to 779 1 to 777 T179N D180* tiling clone,   777/947
(82 %)
8 diff
(99.2 %id)
CA414179 Knee, Osteoarthritic Cartilage .f 1 to 549 565 to 17 K172T tiling clone, AAA   549/549
(100 %)
2 diff
(99.7 %id)
AK309161 thalamus .g 1 to 933 1 to 933 exact tiling clone,   933/933
(100 %)
2 diff
(99.8 %id)
DC340214 thalamus .g 1 to 558 1 to 558 exact     558/558
(100 %)
1 diff
(99.9 %id)
CD701648 normal nasopharynx .h 1 to 609 23 to 629 T47A tiling clone,   607/629
(96 %)
9 diff
(98.6 %id)
TI_149290227   .i 1 to 825 883 to 62 exact tiling clone, AAA   822/826
(99 %)
7 diff
(99.2 %id)
BM973329 lung .i 126 to 825 716 to 19 exact tiling clone, AAA   698/698
(100 %)
2 diff
(99.8 %id)
BG565300 Liver .j 1 to 658 1 to 665 V44X tiling clone,   665/830
(80 %)
22 diff
(97.4 %id)
CV379073 head_neck .k-u 1 to 411 1 to 411   tiling clone,   411/412
(99 %)
10 diff
(97.6 %id)
AI471752 follicular lymphoma, lymph node .k-u 338 to 800 463 to 1 R51C tiling clone,   463/463
(100 %)
2 diff
(99.6 %id)
BM792825 Ascites, stomach .l 1 to 358 1 to 358 G44A G52C tiling clone,   358/358
(100 %)
3 diff
(99.2 %id)
BG248550 adenocarcinoma cell line, colon Gene IL1R2, variant not shown       available from MGC, This clone was ignored    
DB322214   Gene IL1R2, variant not shown         This clone was ignored    
DA670264   Gene IL1R2, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI