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Gene IL1ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
73 supporting clones for gene IL1A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC035169 testis .a 1 to 2644 1 to 2644 K79* tiling clone, available from MGC, AAA   2644/2644
(100 %)
4 diff
(99.9 %id)
NM_000575.3   .a 5 to 2931 1 to 2927 exact RefSeq, AAA   2927/2927
(100 %)
0 diff
(100 %id)
DB459177 testis .a 64 to 542 1 to 479       479/479
(100 %)
0 diff
(100 %id)
DA483575 brain .a 846 to 1580 2 to 736   capped   735/743
(98 %)
2 diff
(99.8 %id)
BP337525 coronary artery .a 900 to 1483 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BP337706 coronary artery .a 900 to 1482 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BG717552 testis .a 901 to 1424 1 to 529       529/690
(76 %)
11 diff
(98.5 %id)
AK314850   .a 906 to 1780 1 to 875 exact     875/875
(100 %)
0 diff
(100 %id)
DA466452   .a 906 to 1475 2 to 571   capped   570/571
(99 %)
3 diff
(99.5 %id)
DB453288 testis .a 906 to 1411 1 to 506       506/507
(99 %)
3 diff
(99.5 %id)
BP336175 coronary artery .a 906 to 1486 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BP336556 coronary artery .a 906 to 1488 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP336972 coronary artery .a 906 to 1490 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BP337664 coronary artery .a 906 to 1487 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA543786   .a 907 to 1467 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA712154   .a 907 to 1452 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
X02851   .a 907 to 2929 1 to 2027 A114S     2027/2027
(100 %)
6 diff
(99.8 %id)
BM009964 amelanotic melanoma, cell line, skin .a 913 to 1598 1 to 692       692/692
(100 %)
11 diff
(98.5 %id)
TI_59384750   .a 914 to 1598 64 to 754       691/691
(100 %)
10 diff
(98.6 %id)
BM912050 amelanotic melanoma, cell line, skin .a 915 to 1566 1 to 657       657/1165
(56 %)
26 diff
(97.8 %id)
BM912073 amelanotic melanoma, cell line, skin .a 915 to 1740 1 to 834       834/1066
(78 %)
21 diff
(98.1 %id)
DA666251   .a 919 to 1468 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BQ222873 large cell carcinoma, lung .a 929 to 1770 1 to 855       855/860
(99 %)
23 diff
(97.4 %id)
M28983   .a 929 to 2794 1 to 1870 exact AAA   1870/2408
(77 %)
8 diff
(99.7 %id)
DA545102   .a 936 to 1492 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
X56086 blood .a 939 to 1909 1 to 971 exact     971/971
(100 %)
0 diff
(100 %id)
BE618992 large cell carcinoma, lung .a 948 to 1557 1 to 613       613/613
(100 %)
7 diff
(98.9 %id)
BE788845 large cell carcinoma, lung .a 955 to 1435 25 to 514       490/739
(66 %)
22 diff
(97.1 %id)
BC013142 Lung, large cell carcinoma .a 956 to 2918 1 to 1963 exact tiling clone, available from MGC, AAA   1963/1963
(100 %)
0 diff
(100 %id)
TI_1948102296   .a 957 to 1780 122 to 945 N220H V237I L267R A271G fully sequenced,   824/945
(87 %)
17 diff
(98.3 %id)
TI_1948102464   .a 957 to 1218 120 to 381       262/281
(93 %)
6 diff
(97.9 %id)
TI_1948102636   .a 957 to 1779 122 to 949   fully sequenced,   828/949
(87 %)
21 diff
(97.8 %id)
TI_1948102795   .a 957 to 1224 120 to 387       268/289
(92 %)
6 diff
(98.0 %id)
M15329   .a 960 to 2644 1 to 1685 exact     1685/1685
(100 %)
2 diff
(99.9 %id)
BT007014   .a 965 to 1780 1 to 816 exact     816/816
(100 %)
0 diff
(100 %id)
CR457414   .a 965 to 1779 1 to 815       815/816
(99 %)
2 diff
(99.8 %id)
CV025381 mixed .a 965 to 1571 1 to 607       607/607
(100 %)
1 diff
(99.9 %id)
X02531   .a 965 to 2917 1 to 1956 exact     1956/2002
(97 %)
6 diff
(99.8 %id)
CB129378 cervix, Uterine .a 1010 to 1524 1 to 515       515/515
(100 %)
0 diff
(100 %id)
AA913149 pooled .a 1217 to 1936 730 to 4       725/733
(98 %)
42 diff
(94.3 %id)
BG436897 large cell carcinoma, lung .a 1378 to 2211 1 to 835       835/836
(99 %)
20 diff
(97.7 %id)
BF149181 skin .a 1416 to 1829 414 to 1       414/414
(100 %)
0 diff
(100 %id)
TI_1948102637   .a 1424 to 1779 481 to 126   fully sequenced,   356/481
(74 %)
0 diff
(100 %id)
BF899080 marrow .a 1452 to 1654 224 to 18     Submitted on the opposite strand 207/227
(91 %)
4 diff
(98.3 %id)
AA857857 pharynx, squamous cell carcinoma .a 1480 to 1944 466 to 2       465/466
(99 %)
3 diff
(99.4 %id)
TI_1948102465   .a 1493 to 1779 411 to 125       287/314
(91 %)
0 diff
(100 %id)
TI_1948102796   .a 1589 to 1779 315 to 125       191/218
(87 %)
0 diff
(100 %id)
TI_1948102297   .a 1643 to 1784 258 to 117   fully sequenced,   142/164
(86 %)
5 diff
(97.0 %id)
BU168358 large cell carcinoma, lung .a 1989 to 2872 1 to 890       890/894
(99 %)
15 diff
(98.4 %id)
AI022317 liver and spleen .a 2165 to 2615 445 to 1       445/455
(97 %)
20 diff
(95.7 %id)
AI655493 pooled germ cell tumors .a 2174 to 2918 747 to 1       747/747
(100 %)
11 diff
(98.6 %id)
AI655512 pooled germ cell tumors .a 2212 to 2920 711 to 1       711/711
(100 %)
10 diff
(98.6 %id)
AI954814 pooled germ cell tumors .a 2230 to 2918 703 to 13   AAA   691/691
(100 %)
21 diff
(97.0 %id)
CA307202 Alveolar Macrophage, lung .a 2285 to 2931 669 to 17   AAA   653/653
(100 %)
5 diff
(99.3 %id)
AI632261 pooled germ cell tumors .a 2310 to 2918 612 to 1       612/612
(100 %)
8 diff
(98.7 %id)
BF062361 pooled germ cell tumors .a 2388 to 2918 535 to 1       535/535
(100 %)
2 diff
(99.7 %id)
BE964028 large cell carcinoma, lung .a 2399 to 2919 551 to 14   AAA   538/725
(74 %)
41 diff
(94.4 %id)
BU753097 placenta .a 2403 to 2918 534 to 15   AAA   520/520
(100 %)
2 diff
(99.7 %id)
BF589176 pooled .a 2421 to 2918 502 to 1       502/502
(100 %)
3 diff
(99.5 %id)
AA916823 adenocarcinoma, colon .a 2425 to 2931 510 to 1       510/510
(100 %)
8 diff
(98.5 %id)
AW294546   .a 2428 to 2918 506 to 15   AAA   492/499
(98 %)
7 diff
(98.6 %id)
BE672863 pooled germ cell tumors .a 2430 to 2924 499 to 1       499/500
(99 %)
2 diff
(99.6 %id)
DB524660 testis .a 2446 to 2918 1 to 477     Submitted on the opposite strand 477/477
(100 %)
4 diff
(99.2 %id)
AA831119 germinal center B cell .a 2457 to 2922 471 to 6       466/471
(98 %)
0 diff
(100 %id)
AI654996 pooled germ cell tumors .a 2459 to 2918 462 to 1       462/462
(100 %)
4 diff
(99.2 %id)
DB518766 testis .a 2471 to 2931 1 to 466     Submitted on the opposite strand 466/466
(100 %)
3 diff
(99.4 %id)
AA832199 germinal center B cell .a 2476 to 2922 452 to 6       447/452
(98 %)
0 diff
(100 %id)
AA970954 pooled .a 2482 to 2922 446 to 3       444/446
(99 %)
0 diff
(100 %id)
AI026629   .a 2502 to 2919 422 to 1       422/422
(100 %)
3 diff
(99.3 %id)
AA856674 pharynx, squamous cell carcinoma .a 2517 to 2927 413 to 3       411/413
(99 %)
0 diff
(100 %id)
AA936768 squamous cell carcinoma from base of tongue, tongue .a 2528 to 2932 406 to 1   tiling clone,   406/406
(100 %)
2 diff
(99.6 %id)
AA922689 pooled germ cell tumors .a 2532 to 2924 397 to 1       397/397
(100 %)
2 diff
(99.5 %id)
AA856671 pharynx, squamous cell carcinoma .a 2535 to 2782 244 to 1       244/244
(100 %)
14 diff
(94.3 %id)
AW268673 lung, two pooled squamous cell carcinomas .a 2598 to 2882 289 to 1       289/289
(100 %)
12 diff
(95.9 %id)
AW341637 pooled .a 2661 to 2921 265 to 1       265/265
(100 %)
6 diff
(97.8 %id)
C00156   .a 2838 to 2918 1 to 81       81/81
(100 %)
0 diff
(100 %id)
BQ353251 head_neck .b-u 1 to 230 249 to 18 D46* tiling clone,   232/320
(72 %)
4 diff
(98.8 %id)
BI458684 testis Gene IL1A, variant not shown       available from MGC, This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI