To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene CADM4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
113 supporting clones for gene CADM4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF363368   .a 1 to 2176 1 to 2176 exact tiling clone,   2176/2176
(100 %)
0 diff
(100 %id)
NM_145296.1   .a 1 to 2176 1 to 2176 exact RefSeq,   2176/2176
(100 %)
0 diff
(100 %id)
BG700103 brain, hippocampus .a 13 to 510 10 to 520       511/965
(52 %)
13 diff
(98.7 %id)
BF967057 brain, hypothalamus .a 15 to 716 1 to 703   available from MGC,   703/885
(79 %)
29 diff
(96.8 %id)
TI_44343635   .a 15 to 802 48 to 836       789/836
(94 %)
10 diff
(98.9 %id)
BI667286 brain, hypothalamus .a 18 to 311 1 to 293       293/293
(100 %)
4 diff
(98.7 %id)
AK313028 amygdala .a 19 to 1216 1 to 1198 exact     1198/1198
(100 %)
0 diff
(100 %id)
DA138635 alzheimer cortex .a 20 to 443 2 to 425   capped   424/431
(98 %)
3 diff
(99.4 %id)
DA151331 amygdala .a 20 to 547 2 to 531   capped   530/530
(100 %)
2 diff
(99.7 %id)
BC068457 Brain, hypothalamus .a 20 to 2176 1 to 2157 W178* available from MGC, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 2157/2157
(100 %)
2 diff
(100.0 %id)
DB175514 kidney, tumor tissue .a 20 to 587 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA351860 substantia nigra .a 21 to 568 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA062192 cerebellum .a 40 to 598 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB486120.
matches multiple genes
hypothalamus .a 47 to 707 1 to 661     Submitted on the opposite strand, also hits gene DFNA5 661/661
(100 %)
2 diff
(99.7 %id)
DB488606 hypothalamus .a 47 to 498 1 to 451       451/451
(100 %)
2 diff
(99.6 %id)
DB492906 hypothalamus .a 47 to 772 1 to 724       724/727
(99 %)
8 diff
(98.9 %id)
DB504596 hypothalamus .a 47 to 519 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
DB171750 kidney, tumor tissue .a 48 to 607 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA364828 subthalamic nucleus .a 51 to 607 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AI050793 Kidney .a 95 to 578 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
AI086412 anaplastic oligodendroglioma, brain .a 95 to 546 1 to 453     Submitted on the opposite strand 453/453
(100 %)
3 diff
(99.4 %id)
AI375610 brain, glioblastoma (pooled) .a 95 to 604 1 to 510     Submitted on the opposite strand 510/510
(100 %)
0 diff
(100 %id)
BE222886 brain, oligodendroglioma .a 95 to 713 1 to 619     Submitted on the opposite strand 619/627
(98 %)
8 diff
(98.8 %id)
BE222951 brain, oligodendroglioma .a 95 to 713 1 to 619     Submitted on the opposite strand 619/627
(98 %)
5 diff
(99.3 %id)
TI_153988682   .a 95 to 533 61 to 500     Submitted on the opposite strand 440/500
(88 %)
42 diff
(91.6 %id)
TI_153989000   .a 95 to 617 58 to 581     Submitted on the opposite strand 524/581
(90 %)
25 diff
(95.7 %id)
AW205181   .a 96 to 508 1 to 414     Submitted on the opposite strand 414/414
(100 %)
6 diff
(98.6 %id)
BX440536 brain, fetal brain .a 110 to 872 763 to 1     Submitted on the opposite strand 763/763
(100 %)
0 diff
(100 %id)
AW204903   .a 110 to 248 15 to 152     Submitted on the opposite strand 138/152
(90 %)
6 diff
(96.1 %id)
AW206768   .a 110 to 449 15 to 354     Submitted on the opposite strand 344/354
(97 %)
7 diff
(98.1 %id)
TI_153990842   .a 110 to 585 77 to 552     Submitted on the opposite strand 480/552
(86 %)
11 diff
(98.1 %id)
AA449971   .a 113 to 532 19 to 438     Submitted on the opposite strand 422/438
(96 %)
6 diff
(98.7 %id)
AI076878 brain, glioblastoma (pooled) .a 122 to 558 1 to 437     Submitted on the opposite strand 437/437
(100 %)
0 diff
(100 %id)
AW615285 carcinoid, lung .a 122 to 446 1 to 325     Submitted on the opposite strand 325/325
(100 %)
3 diff
(99.1 %id)
AI094791 brain, glioblastoma (pooled) .a 124 to 563 1 to 440     Submitted on the opposite strand 440/440
(100 %)
2 diff
(99.6 %id)
DA250541 caudate nucleus .a 129 to 549 2 to 424   capped   423/431
(98 %)
3 diff
(99.4 %id)
AA985225 schizophrenic brain S-11 frontal lobe .a 136 to 495 1 to 360     Submitted on the opposite strand 360/360
(100 %)
2 diff
(99.5 %id)
BE772589 prostate_tumor .a 177 to 549 390 to 18       373/390
(95 %)
1 diff
(99.8 %id)
BP200037 amygdala .a 208 to 789 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA133456 alzheimer cortex .a 285 to 852 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
AW938858 denis_drash .a 294 to 698 18 to 421       404/486
(83 %)
9 diff
(98.2 %id)
BC113963 PCR rescued clones .a 433 to 1299 6 to 872       867/872
(99 %)
6 diff
(99.4 %id)
BF326540 breast_normal .a 535 to 1108 605 to 29       577/614
(93 %)
0 diff
(100 %id)
AW992011 breast_normal .a 538 to 1106 589 to 19     Submitted on the opposite strand 571/609
(93 %)
8 diff
(98.7 %id)
AW992017 breast_normal .a 539 to 1124 587 to 2     Submitted on the opposite strand 586/587
(99 %)
1 diff
(99.9 %id)
AW992022 breast_normal .a 539 to 1106 592 to 25     Submitted on the opposite strand 568/592
(95 %)
3 diff
(99.5 %id)
AW992018 breast_normal .a 543 to 1134 8 to 599       596/599
(99 %)
7 diff
(98.9 %id)
BG911369 anaplastic oligodendroglioma with 1p/19qloss, brain .a 555 to 1455 1 to 890       890/925
(96 %)
24 diff
(97.5 %id)
AW992020 breast_normal .a 568 to 1134 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
CD516265 White Matter .a 767 to 1555 1 to 799       799/928
(86 %)
15 diff
(98.4 %id)
BF087423 head_neck .a 800 to 1189 394 to 8       387/398
(97 %)
1 diff
(99.8 %id)
T07169   .a 897 to 1217 322 to 1       320/322
(99 %)
7 diff
(97.9 %id)
AA451775   .a 1012 to 1389 372 to 1     Submitted on the opposite strand 372/372
(100 %)
6 diff
(98.4 %id)
DB503578 hypothalamus .a 1107 to 1579 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
CD637288   .a 1285 to 1544 20 to 277       258/279
(92 %)
3 diff
(99.0 %id)
CD637289   .a 1285 to 1544 261 to 3       259/281
(92 %)
0 diff
(100 %id)
BM716721 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1575 to 1722 1 to 147   fully sequenced,   147/147
(100 %)
1 diff
(99.4 %id)
BM681575 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1588 to 2000 431 to 19   AAA   413/419
(98 %)
0 diff
(100 %id)
BU739201 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1608 to 2176 584 to 16   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 569/576
(98 %)
2 diff
(99.7 %id)
BU739229 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1608 to 2069 473 to 12   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 462/470
(98 %)
1 diff
(99.8 %id)
BE645821 Prostate .a 1622 to 2069 447 to 1       447/447
(100 %)
4 diff
(99.2 %id)
AI768453 Kidney .a 1648 to 2003 357 to 1       357/357
(100 %)
3 diff
(99.2 %id)
BE222930 brain, oligodendroglioma .a 1660 to 2069 410 to 1       410/410
(100 %)
0 diff
(100 %id)
DB306338 caudate nucleus .a 1671 to 2176 509 to 1       509/510
(99 %)
8 diff
(98.5 %id)
BX463698 adult brain, brain .a 1684 to 2178 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
AW450014   .a 1684 to 2079 396 to 1       396/396
(100 %)
3 diff
(99.3 %id)
BM674356 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1692 to 2080 389 to 1   fully sequenced,   389/389
(100 %)
2 diff
(99.5 %id)
DB574812 hypothalamus .a 1706 to 2176 1 to 471     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
BF436783 Prostate .a 1721 to 2178 464 to 6       459/464
(98 %)
0 diff
(100 %id)
AI143069 heart .a 1722 to 2179 464 to 7       458/464
(98 %)
0 diff
(100 %id)
BX104294 heart .a 1724 to 2170 1 to 447       447/447
(100 %)
1 diff
(99.8 %id)
AI871307 anaplastic oligodendroglioma, brain .a 1726 to 2069 344 to 1       344/344
(100 %)
3 diff
(99.2 %id)
AA987263 carcinoid, lung .a 1791 to 2178 389 to 1       389/389
(100 %)
5 diff
(98.8 %id)
BF508315   .a 1794 to 2062 286 to 18   AAA Possibly primed on the genome, locally A rich (24/27 A in genome downstream of last aligned base) 269/269
(100 %)
0 diff
(100 %id)
AI889047 anaplastic oligodendroglioma, brain .a 1805 to 2177 373 to 1       373/375
(99 %)
6 diff
(98.4 %id)
AI869487 anaplastic oligodendroglioma, brain .a 1806 to 2069 264 to 1       264/264
(100 %)
1 diff
(99.7 %id)
BF002720 Prostate .a 1807 to 2071 265 to 1       265/265
(100 %)
0 diff
(100 %id)
AI948699 Kidney .a 1829 to 2069 241 to 1       241/241
(100 %)
5 diff
(98.0 %id)
AW293256   .a 1829 to 2178 360 to 11       350/360
(97 %)
0 diff
(100 %id)
AI743967 Kidney .a 1836 to 2179 345 to 1       345/345
(100 %)
3 diff
(99.2 %id)
AI589568 anaplastic oligodendroglioma, brain .a 1840 to 2179 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
AI934847 anaplastic oligodendroglioma, brain .a 1848 to 2176 339 to 11   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 329/329
(100 %)
1 diff
(99.7 %id)
CN430273 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1849 to 2010 1 to 162       162/162
(100 %)
1 diff
(99.4 %id)
AI061301   .a 1860 to 2178 349 to 31       319/360
(88 %)
0 diff
(100 %id)
AI636231 Kidney .a 1884 to 2178 299 to 5       295/299
(98 %)
0 diff
(100 %id)
BF110109 carcinoid, lung .a 1953 to 2178 230 to 5       226/230
(98 %)
0 diff
(100 %id)
AW137608   .a 2001 to 2179 196 to 18   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 179/189
(94 %)
1 diff
(99.5 %id)
AW138549   .a 2002 to 2176 192 to 18   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 175/185
(94 %)
2 diff
(99.0 %id)
CB048459 Prostate .a 2002 to 2176 199 to 25   AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 175/184
(95 %)
0 diff
(100 %id)
BE673592 Prostate .a 2034 to 2179 150 to 5       146/150
(97 %)
0 diff
(100 %id)
AI658865 Prostate .a 2035 to 2176 142 to 1       142/142
(100 %)
1 diff
(99.3 %id)
AI805103 Prostate .a 2035 to 2176 142 to 1       142/142
(100 %)
0 diff
(100 %id)
AI991767 Prostate .a 2035 to 2176 142 to 1       142/142
(100 %)
0 diff
(100 %id)
BM725491 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2126 to 2491 1 to 366   tiling clone, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 366/366
(100 %)
1 diff
(99.8 %id)
BM931353 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2126 to 2248 1 to 123   fully sequenced, Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 123/123
(100 %)
0 diff
(100 %id)
BM684917 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2218 to 2490 294 to 20   fully sequenced, AAA Possibly primed on the genome, locally A rich (18/20 A in genome downstream of last aligned base) 275/275
(100 %)
3 diff
(99.0 %id)
AI933323 anaplastic oligodendroglioma, brain .b-u 1 to 411 409 to 1 A4L G5E T6P A7R G8E ... tiling clone,   409/418
(97 %)
2 diff
(99.6 %id)
AW613042 Kidney .b-u 61 to 409 349 to 1       349/349
(100 %)
0 diff
(100 %id)
BQ375957 testis_normal .b-u 371 to 775 1 to 404   tiling clone,   404/404
(100 %)
20 diff
(95.1 %id)
AI937667 anaplastic oligodendroglioma, brain .b-u 416 to 782 368 to 1   tiling clone,   368/368
(100 %)
1 diff
(99.8 %id)
AW075220 anaplastic oligodendroglioma, brain .b-u 423 to 772 353 to 2       352/359
(98 %)
0 diff
(100 %id)
BQ375956 testis_normal .b-u 453 to 784 1 to 333   tiling clone,   333/333
(100 %)
22 diff
(93.4 %id)
BQ918063 sciatic nerve .c 1 to 374 415 to 38 S2A Q6A Y7V V8R L9A ... tiling clone, AAA Submitted on the opposite strand 378/940
(40 %)
8 diff
(99.2 %id)
AI913589 Kidney .d 1 to 302 302 to 1 V91M tiling clone,   302/302
(100 %)
1 diff
(99.7 %id)
EC510811 Prostate .e-u 1 to 101 1 to 101 exact tiling clone,   101/101
(100 %)
0 diff
(100 %id)
EC568757 Prostate .e-u 1 to 101 1 to 101 exact     101/101
(100 %)
0 diff
(100 %id)
AV705146 adrenal gland Gene CADM4, variant not shown         Suspected internal deletion, this clone was ignored    
AW992019 breast_normal Gene CADM4, variant not shown         This clone was ignored    
BX108038 pooled germ cell tumors Gene CADM4, variant not shown       AAA This clone was ignored    
AA722913 heart Gene CADM4, variant not shown         This clone was ignored    
AA936618 pooled germ cell tumors Gene CADM4, variant not shown         This clone was ignored    
AI656668 pooled germ cell tumors Gene CADM4, variant not shown         This clone was ignored    
AI653718 pooled germ cell tumors Gene CADM4, variant not shown         This clone was ignored    
AI653266 pooled germ cell tumors Gene CADM4, variant not shown         This clone was ignored    
AW204383   Gene CADM4, variant not shown       AAA This clone was ignored    
BF528197 anaplastic oligodendroglioma with 1p/19qloss, brain Gene CADM4, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI