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Gene IGHV4-55TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
65 supporting clones for gene IGHV4-55 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA971787.
matches multiple genes
synovial membrane tissue from rheumatioidarthritis IGHV4-55.a 1 to 403 2 to 402 G2D H5C K39R S41A I47T ... tiling clone, capped also hits gene memimi 401/486
(82 %)
19 diff
(96.1 %id)
DA995827.
matches multiple genes
synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 384 9 to 392 G2D W23C E42G I47T D53A ... tiling clone, capped also hits gene memimi 391/480
(81 %)
33 diff
(93.2 %id)
DA982466 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 368 7 to 377 G2D H5S I47T A49S D53G ... capped   376/376
(100 %)
31 diff
(91.8 %id)
DA008448 adipose IGHV4-55.b 1 to 393 6 to 396 E42A T43A I47T D53G I55F ... tiling clone, capped   395/414
(95 %)
49 diff
(88.2 %id)
DA979739 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 395 6 to 400 G2D L4P V24A K39R E42G ... capped   399/470
(84 %)
21 diff
(95.6 %id)
DA985769 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 329 6 to 337 G2D H5S I47T A49S D53G ... capped   336/336
(100 %)
28 diff
(91.7 %id)
DA934670.
matches multiple genes
Spleen IGHV4-55.b 1 to 385 5 to 389 G2D L15F I47T D53G S57T ... tiling clone, capped also hits gene memimi 388/399
(97 %)
39 diff
(90.3 %id)
AF417843   IGHV4-55.b 1 to 392 3 to 397 G2D L4M H5C N7K V18E ... tiling clone,   397/486
(81 %)
32 diff
(93.5 %id)
DC358848 lung IGHV4-55.b 1 to 404 3 to 405 G2D Q27S V28G Q29A L30A ...     405/473
(85 %)
34 diff
(92.9 %id)
DA971308 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 389 4 to 395 G2D H5C E42Q I47T A49T ... capped   394/456
(86 %)
17 diff
(96.3 %id)
DA976459.
matches multiple genes
synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 392 4 to 395 G2D Q29E G36R E42G I47T ... capped also hits gene memimi 394/463
(85 %)
38 diff
(91.8 %id)
M27768   IGHV4-55.b 1 to 168 2 to 168       168/175
(96 %)
14 diff
(92.0 %id)
DA970831.
matches multiple genes
synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 392 2 to 393 G2D Q29E G36R E42G I47T ... tiling clone, capped also hits gene memimi 392/466
(84 %)
38 diff
(91.9 %id)
DA978853 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 1 to 347 2 to 351 G2D H5S I47T A49S D53G ... capped   350/350
(100 %)
30 diff
(91.5 %id)
DB015930 esophageal, tumor tissue IGHV4-55.b 1 to 394 2 to 398 G2D H5C V28L I47T A49T ... capped   397/476
(83 %)
22 diff
(95.4 %id)
AF064879 vascular IGHV4-55.b 15 to 384 1 to 373       373/432
(86 %)
16 diff
(96.3 %id)
AW630063 2 pooled high-grade transitional celltumors, genitourinary tract IGHV4-55.b 17 to 385 1 to 366   tiling clone,   366/427
(85 %)
23 diff
(94.7 %id)
AY671187 cord Blood IGHV4-55.b 33 to 384 1 to 354       354/442
(80 %)
15 diff
(96.7 %id)
AY671711 bone marrow IGHV4-55.b 33 to 385 1 to 356       356/442
(80 %)
14 diff
(96.9 %id)
AF062112 blood IGHV4-55.b 35 to 381 1 to 350       350/414
(84 %)
12 diff
(97.2 %id)
AF062183 blood IGHV4-55.b 35 to 390 1 to 353       353/411
(85 %)
19 diff
(95.4 %id)
AF062220.
matches multiple genes
blood IGHV4-55.b 35 to 385 1 to 348   tiling clone, also hits gene memimi 348/420
(82 %)
12 diff
(97.2 %id)
AF174035   IGHV4-55.b 35 to 392 1 to 358       358/429
(83 %)
29 diff
(93.3 %id)
AY204757   IGHV4-55.b 35 to 385 1 to 348       348/430
(80 %)
20 diff
(95.4 %id)
M99607 blood IGHV4-55.b 35 to 385 1 to 351       351/420
(83 %)
15 diff
(96.5 %id)
M99609 blood IGHV4-55.b 35 to 395 1 to 364   tiling clone,   364/414
(87 %)
12 diff
(97.2 %id)
Z75362 thymus IGHV4-55.b 35 to 386 1 to 355       355/429
(82 %)
15 diff
(96.6 %id)
Z75364 thymus IGHV4-55.b 35 to 385 1 to 354       354/423
(83 %)
18 diff
(95.8 %id)
Z75367 thymus IGHV4-55.b 35 to 385 1 to 354       354/414
(85 %)
14 diff
(96.7 %id)
Z75375 thymus IGHV4-55.b 35 to 388 1 to 357       357/423
(84 %)
15 diff
(96.5 %id)
Z75379 thymus IGHV4-55.b 35 to 385 1 to 354       354/414
(85 %)
13 diff
(96.9 %id)
Z75381 thymus IGHV4-55.b 35 to 390 1 to 359       359/426
(84 %)
27 diff
(93.7 %id)
Z75397 thymus IGHV4-55.b 35 to 385 1 to 354       354/432
(81 %)
16 diff
(96.3 %id)
Z75400 thymus IGHV4-55.b 35 to 385 1 to 354       354/423
(83 %)
18 diff
(95.8 %id)
Z75402 thymus IGHV4-55.b 35 to 385 1 to 348   tiling clone,   348/429
(81 %)
13 diff
(97.0 %id)
Z75405 thymus IGHV4-55.b 35 to 385 1 to 354       354/408
(86 %)
14 diff
(96.6 %id)
BP419035 small intestine IGHV4-55.b 46 to 390 1 to 349     Submitted on the opposite strand 349/384
(90 %)
31 diff
(92.0 %id)
CD698187 normal nasopharynx IGHV4-55.b 81 to 384 138 to 439 G2D H5C Q31R G36R L37T ...     405/497
(81 %)
33 diff
(93.4 %id)
DA427490 colon IGHV4-55.b 81 to 385 102 to 406 G2D E32Q L37V K39R E42G ... tiling clone, capped   405/481
(84 %)
42 diff
(91.3 %id)
DA982510 synovial membrane tissue from rheumatioidarthritis IGHV4-55.b 81 to 385 120 to 427 G2D H5S I47T A49S D53G ... capped   426/518
(82 %)
23 diff
(95.6 %id)
DQ535311 PBMC IGHV4-55.b 86 to 385 1 to 303       303/366
(82 %)
17 diff
(95.4 %id)
DQ535336 PBMC IGHV4-55.b 86 to 384 1 to 296       296/354
(83 %)
13 diff
(96.4 %id)
AB066902   IGHV4-55.b 92 to 385 1 to 297   tiling clone,   297/366
(81 %)
11 diff
(97.0 %id)
AB067278   IGHV4-55.b 92 to 398 1 to 310       310/369
(84 %)
24 diff
(93.5 %id)
AF062128 blood IGHV4-55.b 92 to 385 1 to 297       297/366
(81 %)
13 diff
(96.5 %id)
AJ244957 tonsil IGHV4-55.b 92 to 385 1 to 297   tiling clone,   297/366
(81 %)
13 diff
(96.5 %id)
AJ244983 tonsil IGHV4-55.b 92 to 384 1 to 296       296/363
(81 %)
12 diff
(96.7 %id)
AJ245034.
matches multiple genes
tonsil IGHV4-55.b 92 to 384 1 to 290     also hits gene sikama 290/360
(80 %)
13 diff
(96.4 %id)
AJ245072 tonsil IGHV4-55.b 92 to 385 1 to 297   tiling clone,   297/354
(83 %)
12 diff
(96.7 %id)
AJ245233 cerebrospinal fluid IGHV4-55.b 92 to 385 1 to 294       294/363
(80 %)
23 diff
(93.7 %id)
AJ279530 tonsil IGHV4-55.b 92 to 384 1 to 296       296/357
(82 %)
12 diff
(96.7 %id)
AJ306838.
matches multiple genes
  IGHV4-55.b 92 to 393 1 to 305     also hits gene yanuru 305/363
(84 %)
21 diff
(94.3 %id)
AJ556756 cerebrospinal fluid IGHV4-55.b 92 to 395 1 to 307       307/360
(85 %)
24 diff
(93.4 %id)
AJ556762 cerebrospinal fluid IGHV4-55.b 92 to 395 1 to 307       307/360
(85 %)
24 diff
(93.4 %id)
AJ579117 tonsil IGHV4-55.b 92 to 391 1 to 303       303/363
(83 %)
19 diff
(94.8 %id)
AJ579293 tonsil IGHV4-55.b 92 to 404 1 to 316       316/363
(87 %)
12 diff
(96.7 %id)
DQ100897 peripheral blood IGHV4-55.b 92 to 392 1 to 304       304/375
(81 %)
20 diff
(94.7 %id)
DQ926028   IGHV4-55.b 92 to 385 1 to 297   tiling clone,   297/364
(81 %)
10 diff
(97.3 %id)
DQ926182   IGHV4-55.b 92 to 385 1 to 297       297/365
(81 %)
13 diff
(96.5 %id)
DQ926521   IGHV4-55.b 92 to 384 1 to 296       296/354
(83 %)
12 diff
(96.7 %id)
L12194.
matches multiple genes
blood IGHV4-55.b 92 to 394 1 to 306   tiling clone, also hits gene memimi, yanuru 306/378
(80 %)
23 diff
(94.0 %id)
Z70614 blood IGHV4-55.b 92 to 388 1 to 294       294/333
(88 %)
11 diff
(96.7 %id)
Y11323 Liver IGHV4-55.b 297 to 423 1 to 127   tiling clone,   127/127
(100 %)
3 diff
(97.7 %id)
Y11324 Liver IGHV4-55.b 297 to 423 1 to 127   tiling clone,   127/127
(100 %)
4 diff
(96.9 %id)
AF262209 tonsil Gene IGHV4-55, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes