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Gene IFITM4PandMICEandRPL23AP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
48 supporting clones for gene IFITM4PandMICEandRPL23AP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AW407076 lymph .a 1 to 405 1 to 405   tiling clone,   405/405
(100 %)
4 diff
(99.1 %id)
TI_154144899   .a 6 to 646 86 to 728   tiling clone,   643/643
(100 %)
32 diff
(95.1 %id)
TI_154148163   .a 7 to 667 105 to 765   tiling clone,   661/677
(97 %)
25 diff
(96.4 %id)
BQ638736 eye, retina .a 551 to 1157 7 to 613   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 607/613
(99 %)
8 diff
(98.7 %id)
TI_159716665   .b 1 to 706 812 to 107 R10S Q11R K12X P17X G19X ... tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 706/977
(72 %)
7 diff
(99.3 %id)
CB852528 Human Lung Epithelial cells, lung .b 59 to 706 730 to 83   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 648/648
(100 %)
3 diff
(99.6 %id)
AI681250 carcinoid, lung .b 204 to 706 518 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 503/503
(100 %)
3 diff
(99.5 %id)
BF976912 melanotic melanoma, high MDR, skin .c 1 to 665 1 to 658 G20E A21L A22L A23L E24S ... tiling clone,   658/897
(73 %)
26 diff
(97.2 %id)
BX954081   .d-u 1 to 738 1 to 738 exact tiling clone,   738/740
(99 %)
5 diff
(99.4 %id)
BX471324   .d-u 409 to 765 1 to 357   tiling clone,   357/357
(100 %)
6 diff
(98.4 %id)
NR_001590.1   .e-u 1 to 342 1 to 342 exact RefSeq, tiling clone,   342/342
(100 %)
0 diff
(100 %id)
DB141922 thymus .f 1 to 546 2 to 548 L33P F34V G35W T36H E37R ... tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
N32371 melanocyte .f 361 to 623 1 to 263   tiling clone,   263/263
(100 %)
0 diff
(100 %id)
N22959 melanocyte .f 1540 to 1913 386 to 10   tiling clone,   377/386
(97 %)
0 diff
(100 %id)
AL832418 melanoma (MeWo cell line) .g 1 to 2834 13 to 2841 Q37R A101D tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2829/2829
(100 %)
22 diff
(99.3 %id)
CB142833 Liver .g 1222 to 1789 1 to 568       568/568
(100 %)
6 diff
(99.0 %id)
BF058829 fibrotheoma, ovary .g 1414 to 1913 1 to 500     Submitted on the opposite strand 500/500
(100 %)
3 diff
(99.4 %id)
AA258343 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 1 to 468 1 to 468 L15R A17C P18T Q19P A21S ... tiling clone,   468/468
(100 %)
3 diff
(99.4 %id)
DB217427 trachea .h 392 to 848 2 to 458   tiling clone, capped   457/457
(100 %)
0 diff
(100 %id)
DB349183 trachea .h 1762 to 2191 429 to 1   tiling clone,   429/431
(99 %)
3 diff
(99.4 %id)
AK092748 small intestine .i 1 to 1902 2 to 1903 H30P W35R available from FLJ,   1903/1903
(100 %)
8 diff
(99.6 %id)
AX747705   .i 1 to 1902 2 to 1903 H30P W35R     1903/1903
(100 %)
8 diff
(99.6 %id)
NR_026972.1   .i 1 to 1911 2 to 1912 exact RefSeq, tiling clone,   1912/1914
(99 %)
5 diff
(99.8 %id)
DA917457 small intestine .i 1 to 562 2 to 564   capped   561/563
(99 %)
1 diff
(99.9 %id)
TI_149304506   .i 986 to 1904 990 to 85 S2L Q3* AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 906/970
(93 %)
33 diff
(96.6 %id)
BU685406 lung, Primary Lung Epithelial Cells .i 1179 to 1904 746 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 728/728
(100 %)
9 diff
(98.8 %id)
TI_149282478   .i 1226 to 1902 694 to 20   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 675/714
(94 %)
13 diff
(98.2 %id)
AA327521 colon .i 1267 to 1547 1 to 280       280/286
(97 %)
6 diff
(98.0 %id)
DB331756 small intestine .i 1363 to 1902 541 to 1       541/541
(100 %)
3 diff
(99.5 %id)
NR_026973.1   .j 1 to 695 2 to 696 exact RefSeq, tiling clone,   696/698
(99 %)
5 diff
(99.3 %id)
BM726335 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 42 to 580 1 to 539 exact     539/539
(100 %)
0 diff
(100 %id)
BQ671874 epidermoid carcinoma, cell line, salivary gland .j 61 to 688 11 to 638 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 628/638
(98 %)
8 diff
(98.8 %id)
AA703079 liver and spleen .j 150 to 686 534 to 1       534/534
(100 %)
2 diff
(99.7 %id)
AI669379 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .j 150 to 690 541 to 2       540/541
(99 %)
0 diff
(100 %id)
AW651807   .j 154 to 480 1 to 327   fully sequenced,   327/327
(100 %)
1 diff
(99.7 %id)
AI766392 Kidney .j 233 to 651 421 to 1       421/422
(99 %)
9 diff
(97.9 %id)
AA868186   .j 252 to 688 446 to 10       437/446
(97 %)
0 diff
(100 %id)
T84105 liver and spleen .j 350 to 685 344 to 4       341/350
(97 %)
0 diff
(100 %id)
AW300682 colon, moderately differentiated adenocarcinoma .j 392 to 688 299 to 3       297/299
(99 %)
0 diff
(100 %id)
AW672715   .j 450 to 693 242 to 1   fully sequenced,   242/242
(100 %)
5 diff
(98.0 %id)
BF217338 brain, glioblastoma .k-u 1 to 457 1 to 453   tiling clone,   453/841
(53 %)
14 diff
(98.4 %id)
AI025410 parathyroid gland, parathyroid tumor .k-u 414 to 648 239 to 8 V21A L23* tiling clone,   232/239
(97 %)
0 diff
(100 %id)
BF668790 brain, primitive neuroectoderm .l 1 to 636 1 to 633 S29A C30A C31A W32G R33G ... tiling clone,   633/635
(99 %)
8 diff
(98.8 %id)
BF922535 nervous_tumor .l 137 to 386 1 to 250   tiling clone,   250/263
(95 %)
6 diff
(97.8 %id)
AW837172 leiomios .m 1 to 568 567 to 1 P32A tiling clone,   567/567
(100 %)
10 diff
(98.3 %id)
W74017 Pancreas, pancreatic islet .n -9 to 333 1 to 351 W37L tiling clone,   351/368
(95 %)
9 diff
(97.6 %id)
W74042 Pancreas, pancreatic islet .n -9 to 331 1 to 344 W37L tiling clone,   344/363
(94 %)
5 diff
(98.7 %id)
BG898140 cartilage .o 1 to 285 77 to 362 Q2R Q3P W4V R5A L6P ... tiling clone,   286/294
(97 %)
7 diff
(97.7 %id)
DB311150 thalamus Gene IFITM4PandMICEandRPL23AP1, variant not shown              
DA375901 thalamus Gene IFITM4PandMICEandRPL23AP1, variant not shown       capped      
T83458 liver and spleen Gene IFITM4PandMICEandRPL23AP1, variant not shown         This clone was ignored    
T84099 liver and spleen Gene IFITM4PandMICEandRPL23AP1, variant not shown         This clone was ignored    
T83464 liver and spleen Gene IFITM4PandMICEandRPL23AP1, variant not shown         Suspected internal deletion, this clone was ignored    
T84103 liver and spleen Gene IFITM4PandMICEandRPL23AP1, variant not shown         Suspected internal deletion, this clone was ignored    
BM991882 Bone, Subchondral Bone Gene IFITM4PandMICEandRPL23AP1, variant not shown       AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base)    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u, .f, .g, .h, .i, .j, .k-u, .l, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC