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Gene HES4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene HES4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57220363   .a 1 to 730 31 to 762   tiling clone,   732/763
(95 %)
16 diff
(98.0 %id)
BI757407 brain .a 2 to 730 1 to 731   tiling clone,   731/732
(99 %)
13 diff
(98.3 %id)
NM_001142467.1   .a 2 to 1038 1 to 1037 exact RefSeq, AAA   1037/1037
(100 %)
0 diff
(100 %id)
BM844469 myeloma .a 57 to 336 1 to 279       279/279
(100 %)
4 diff
(98.6 %id)
BX418442 brain, fetal brain .a 64 to 1037 1 to 965 D4B A17X A21T S22T R23G ...     965/969
(99 %)
66 diff
(93.2 %id)
BI602134 brain, hypothalamus .a 74 to 919 1 to 836   tiling clone,   836/839
(99 %)
24 diff
(97.2 %id)
TI_44170168   .a 75 to 790 117 to 830   tiling clone,   714/830
(86 %)
10 diff
(98.8 %id)
TI_45211718   .a 75 to 919 82 to 916       835/919
(90 %)
26 diff
(97.2 %id)
AL545878 placenta, Placenta Cot 25-normalized .a 76 to 981 930 to 33 A2X A3E D4X T5R P6G ... tiling clone,   898/960
(93 %)
41 diff
(95.8 %id)
DB494664 hypothalamus .a 79 to 585 1 to 507       507/507
(100 %)
2 diff
(99.7 %id)
DB495886 hypothalamus .a 79 to 586 1 to 508       508/508
(100 %)
2 diff
(99.7 %id)
DB497890 hypothalamus .a 79 to 574 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
AL545915 placenta, Placenta Cot 25-normalized .a 82 to 954 60 to 931 A2X S20T R44S E94X L144Q ...     852/1042
(81 %)
32 diff
(97.0 %id)
BU165372 eye, retinoblastoma .a 90 to 570 1 to 482       482/964
(50 %)
7 diff
(99.3 %id)
BG826096 muscle, rhabdomyosarcoma .a 271 to 963 1 to 693       693/693
(100 %)
3 diff
(99.6 %id)
BM794850 Ascites, stomach .a 320 to 902 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DB565714 hypothalamus .a 564 to 1038 1 to 475   tiling clone, Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
BM713553 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1 to 111 1 to 111   tiling clone,   111/111
(100 %)
1 diff
(99.1 %id)
BU538326 adenocarcinoma, cell line, breast .b 220 to 843 1 to 632   tiling clone,   632/1087
(58 %)
37 diff
(96.6 %id)
BU739581 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 474 to 891 436 to 19   tiling clone, AAA   418/418
(100 %)
7 diff
(98.4 %id)
NM_021170.3   .c 1 to 962 1 to 962 exact RefSeq,   962/962
(100 %)
0 diff
(100 %id)
BX459904 brain, fetal brain .c 25 to 491 903 to 439   tiling clone, AAA   465/878
(52 %)
5 diff
(99.5 %id)
BG325949 Kidney, renal cell adenocarcinoma .c 82 to 954 1 to 864 A165Q E166R A167P P168Q A169R ...     864/958
(90 %)
34 diff
(96.5 %id)
BC012351 Kidney, renal cell adenocarcinoma .c 83 to 959 1 to 877 exact tiling clone, available from MGC, AAA   877/877
(100 %)
1 diff
(99.9 %id)
AW161193 brain, frontal lobe .c 85 to 607 1 to 523   fully sequenced,   523/523
(100 %)
4 diff
(99.3 %id)
BQ430105 epithelioid carcinoma, Pancreas .c 85 to 691 1 to 625       625/1024
(61 %)
35 diff
(96.6 %id)
BU526956 epidermoid carcinoma, cell line, lung .c 85 to 730 36 to 686       651/1006
(64 %)
24 diff
(97.7 %id)
BI834315 pooled pancreas and spleen .c 86 to 901 1 to 819 A174G R176P L178V L179V P192T ...     819/821
(99 %)
23 diff
(97.2 %id)
TI_57163859   .c 86 to 901 29 to 847 A174G R176P L178V L179V P192T ...     819/849
(96 %)
28 diff
(96.8 %id)
BX281754 pooled pancreas and spleen .c 87 to 614 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
BQ722686 sympathetic trunk .c 87 to 491 1 to 405       405/903
(44 %)
12 diff
(98.7 %id)
AW630809 2 pooled high-grade transitional celltumors, genitourinary tract .c 97 to 479 1 to 383       383/383
(100 %)
0 diff
(100 %id)
BF967325 brain, hypothalamus .c 132 to 434 1 to 303   fully sequenced,   303/303
(100 %)
3 diff
(99.1 %id)
BM727881 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 184 to 434 1 to 251   fully sequenced,   251/251
(100 %)
0 diff
(100 %id)
AB048791   .c 200 to 865 1 to 666 exact     666/666
(100 %)
1 diff
(99.9 %id)
BU622703 cell lines, Chondrosarcoma .c 206 to 959 772 to 19   AAA   754/754
(100 %)
1 diff
(99.9 %id)
BF001578 colon, colon tumor, RER+ .c 293 to 960 668 to 1       668/668
(100 %)
9 diff
(98.7 %id)
AI380603 B-cell, chronic lymphotic leukemia .c 299 to 962 671 to 6       666/733
(90 %)
18 diff
(97.6 %id)
BX412710 brain, fetal brain .c 300 to 930 637 to 6       632/909
(69 %)
27 diff
(97.1 %id)
BF001624 colon, colon tumor, RER+ .c 318 to 960 645 to 1       645/654
(98 %)
3 diff
(99.6 %id)
AW148795 brain, tumor, 5 pooled (see description) .c 319 to 961 641 to 1       641/644
(99 %)
10 diff
(98.5 %id)
BU634310 cell lines, Chondrosarcoma .c 330 to 959 648 to 19   AAA   630/634
(99 %)
1 diff
(99.9 %id)
BF967864 brain, hypothalamus .c 373 to 916 573 to 30   fully sequenced,   544/573
(94 %)
2 diff
(99.7 %id)
BU741558 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 373 to 959 605 to 19   fully sequenced, AAA   587/587
(100 %)
0 diff
(100 %id)
AW166199 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 374 to 962 589 to 1       589/589
(100 %)
10 diff
(98.4 %id)
AI571458 adenocarcinoma, Pancreas .c 402 to 961 579 to 20   AAA   560/570
(98 %)
10 diff
(98.3 %id)
AW874317 tumor, uterus .c 404 to 962 567 to 9       559/570
(98 %)
7 diff
(98.8 %id)
AI741494 pooled .c 410 to 961 552 to 1       552/552
(100 %)
6 diff
(99.0 %id)
CD742876 Alveolar Macrophage, lung .c 438 to 961 542 to 19   AAA   524/524
(100 %)
15 diff
(97.2 %id)
BQ186891 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 443 to 806 1 to 364   fully sequenced,   364/364
(100 %)
20 diff
(94.6 %id)
DB568986 hypothalamus .c 458 to 959 1 to 502     Submitted on the opposite strand 502/502
(100 %)
2 diff
(99.7 %id)
BF062433 colon, colon tumor, RER+ .c 491 to 962 478 to 7       472/523
(90 %)
0 diff
(100 %id)
AW627570 2 pooled high-grade transitional celltumors, genitourinary tract .c 492 to 959 467 to 1       467/490
(95 %)
12 diff
(97.6 %id)
DB566941 hypothalamus .c 496 to 959 1 to 464     Submitted on the opposite strand 464/464
(100 %)
3 diff
(99.4 %id)
AI817052 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 515 to 960 447 to 1       447/447
(100 %)
5 diff
(98.9 %id)
AI272242 brain, oligodendroglioma .c 516 to 910 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
AI306119 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 566 to 959 394 to 1       394/394
(100 %)
5 diff
(98.8 %id)
AW157589 brain, frontal lobe .c 577 to 962 394 to 9   fully sequenced,   386/394
(97 %)
0 diff
(100 %id)
AW189786 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 604 to 959 364 to 1       364/439
(82 %)
23 diff
(94.8 %id)
BM128269 Islets of Langerhans, Pancreas .c 659 to 962 1 to 304   fully sequenced,   304/304
(100 %)
1 diff
(99.7 %id)
AW513999 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 675 to 959 285 to 1       285/285
(100 %)
2 diff
(99.3 %id)
DB534707 hippocampus .c 718 to 959 1 to 243     Submitted on the opposite strand 243/243
(100 %)
12 diff
(95.1 %id)
BM747954 stomach .c 735 to 961 1 to 227   AAA   227/227
(100 %)
0 diff
(100 %id)
AI287341 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 749 to 959 243 to 33   AAA   211/212
(99 %)
3 diff
(98.6 %id)
BM789724 stomach .c 755 to 961 1 to 207   AAA   207/207
(100 %)
0 diff
(100 %id)
CK299983 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 777 to 961 201 to 17   fully sequenced, AAA   185/185
(100 %)
8 diff
(95.7 %id)
AW293749   .c 819 to 964 1 to 146     Submitted on the opposite strand 146/150
(97 %)
4 diff
(97.4 %id)
AA045635 uterus .c 833 to 959 126 to 4       123/127
(96 %)
0 diff
(100 %id)
BM127944 Islets of Langerhans, Pancreas .c 844 to 961 118 to 1   fully sequenced,   118/118
(100 %)
0 diff
(100 %id)
BI763672 pooled colon, kidney, stomach .d 1 to 776 779 to 3   tiling clone, Submitted on the opposite strand 777/779
(99 %)
0 diff
(100 %id)
TI_57151619   .d 1 to 784 866 to 82     Submitted on the opposite strand 785/866
(90 %)
0 diff
(100 %id)
AL536210 brain, fetal brain .d 186 to 1102 65 to 976   tiling clone,   912/976
(93 %)
6 diff
(99.4 %id)
BM804763 ovary (pool of 3) .d 196 to 638 1 to 447   tiling clone,   447/1235
(36 %)
14 diff
(98.9 %id)
BI758207 brain .d 200 to 825 1 to 645       645/876
(73 %)
34 diff
(96.2 %id)
TI_57220799   .d 203 to 825 68 to 709       642/940
(68 %)
33 diff
(96.5 %id)
BM932329 brain .d 224 to 708 70 to 558       489/1347
(36 %)
21 diff
(98.5 %id)
BI757505 brain .d 277 to 887 1 to 613   tiling clone,   613/613
(100 %)
15 diff
(97.6 %id)
TI_57220633   .d 277 to 887 34 to 646       613/646
(94 %)
6 diff
(99.1 %id)
BQ229573 large cell carcinoma, lung .d 327 to 973 1 to 650   tiling clone,   650/930
(69 %)
15 diff
(98.4 %id)
BQ962309 epithelioid carcinoma cell line, Pancreas .d 364 to 882 1 to 519       519/954
(54 %)
38 diff
(96.1 %id)
BX339786 Placenta Cot 25-normalized .d 924 to 1889 54 to 1006       951/1010
(94 %)
22 diff
(97.9 %id)
CN275969 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 933 to 1160 1 to 229       229/229
(100 %)
7 diff
(97.0 %id)
DB485006 hypothalamus .d 933 to 1383 1 to 451   tiling clone,   451/451
(100 %)
5 diff
(98.9 %id)
AL538352 brain, fetal brain .d 936 to 1798 53 to 915       863/915
(94 %)
14 diff
(98.5 %id)
DR001526 fetal brain .d 936 to 1597 1 to 661       661/661
(100 %)
7 diff
(99.0 %id)
CN315053 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 943 to 1088 1 to 146       146/146
(100 %)
3 diff
(98.0 %id)
BQ072399 pooled lung and spleen .d 972 to 1745 1 to 776   tiling clone,   776/1071
(72 %)
13 diff
(98.8 %id)
AL566237 brain, fetal brain .d 983 to 1589 958 to 355     Submitted on the opposite strand 604/958
(63 %)
12 diff
(98.8 %id)
AL567272 brain, fetal brain .d 1024 to 1416 896 to 503       394/580
(67 %)
0 diff
(100 %id)
BM805048 ovary (pool of 3) .d 1037 to 1769 64 to 793       730/1184
(61 %)
28 diff
(97.7 %id)
CB241590 Human Lung Epithelial cells, lung .d 1247 to 1970 742 to 19 exact AAA   724/724
(100 %)
2 diff
(99.8 %id)
BU633915 cell lines, Chondrosarcoma .d 1311 to 1970 678 to 19 S60Y G86D AAA   660/660
(100 %)
4 diff
(99.4 %id)
BQ013563 placenta .d 1406 to 1972 582 to 16   tiling clone, AAA   567/567
(100 %)
0 diff
(100 %id)
BX455241 brain, fetal brain .e 1 to 771 774 to 5 exact tiling clone,   770/910
(84 %)
19 diff
(98.0 %id)
BG336005 choriocarcinoma, placenta .f 1 to 650 1 to 657 A2P P13A M14A A15W G16H ... tiling clone,   657/1065
(61 %)
33 diff
(97.0 %id)
AL555472 placenta .f 186 to 866 684 to 1   tiling clone, Submitted on the opposite strand 684/966
(70 %)
23 diff
(97.7 %id)
AL555473 placenta .f 186 to 878 64 to 755   tiling clone, AAA   692/755
(91 %)
13 diff
(98.3 %id)
BX437172 thymus Gene HES4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C