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Gene HTR4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
37 supporting clones for gene HTR4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001040173.2   HTR4.a 1 to 2985 1 to 2985 exact RefSeq,   2985/2985
(100 %)
0 diff
(100 %id)
AJ131726   HTR4.a 42 to 1580 1 to 1539 exact tiling clone,   1539/1539
(100 %)
0 diff
(100 %id)
Y12506 gut HTR4.b 1 to 1168 4 to 1170   tiling clone,   1167/1170
(99 %)
2 diff
(99.9 %id)
AM712912 small intestine HTR4.b 16 to 1251 1 to 1236 exact tiling clone,   1236/1236
(100 %)
0 diff
(100 %id)
DA014406 adrenal gland HTR4.c 1 to 431 2 to 433   tiling clone, capped   432/432
(100 %)
3 diff
(99.4 %id)
NM_000870.5   HTR4.c 351 to 3330 1 to 2980 exact RefSeq,   2980/2980
(100 %)
0 diff
(100 %id)
AJ131724   HTR4.c 374 to 3331 1 to 2958 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 2958/2958
(100 %)
2 diff
(100.0 %id)
BC074755 Pooled tissue, PCR rescued clones HTR4.c 472 to 1711 1 to 1240 exact available from MGC,   1240/1240
(100 %)
0 diff
(100 %id)
AJ519673 small intestine HTR4.c 494 to 1717 1 to 1224 Q371R     1224/1224
(100 %)
1 diff
(100.0 %id)
Y12505 gut HTR4.c 498 to 1822 4 to 1328 exact     1325/1328
(99 %)
1 diff
(100.0 %id)
AJ278980 brain (hippocampus) HTR4.c 507 to 1781 1 to 1275 exact     1275/1275
(100 %)
0 diff
(100 %id)
BC095497 G-protein coupled receptors obtained byPCR-directed strategy HTR4.c 511 to 1706 5 to 1200 exact     1196/1204
(99 %)
1 diff
(100.0 %id)
Y10437 brain HTR4.c 513 to 1679 1 to 1167 exact     1167/1167
(100 %)
0 diff
(100 %id)
CO956992 mixed HTR4.c 537 to 774 26 to 263       238/272
(87 %)
4 diff
(98.6 %id)
CO956982 mixed HTR4.c 1019 to 1676 679 to 26       654/823
(79 %)
5 diff
(99.4 %id)
DB295365 adrenal gland HTR4.c 2805 to 3324 521 to 1       521/521
(100 %)
1 diff
(99.9 %id)
AA551373 Schwannoma tumor HTR4.c 3109 to 3330 223 to 1       223/223
(100 %)
1 diff
(99.6 %id)
NM_001040169.2   HTR4.d 1 to 1364 1 to 1364 exact RefSeq,   1364/1364
(100 %)
0 diff
(100 %id)
Y08756   HTR4.d 33 to 1364 4 to 1333 exact tiling clone,   1330/1336
(99 %)
3 diff
(99.8 %id)
AJ278979 brain (hippocampus) HTR4.d 42 to 1280 1 to 1239 exact     1239/1239
(100 %)
0 diff
(100 %id)
CF147797 mixed HTR4.d 46 to 765 5 to 723       719/725
(99 %)
3 diff
(99.6 %id)
Y09586 heart (atrium) HTR4.d 46 to 1211 1 to 1166 exact     1166/1166
(100 %)
0 diff
(100 %id)
Y13584 brain HTR4.d 48 to 1211 1 to 1164 exact     1164/1164
(100 %)
1 diff
(100.0 %id)
Z48150 brain (striatum) HTR4.d 381 to 812 1 to 432       432/432
(100 %)
0 diff
(100 %id)
AJ633645   HTR4.e 1 to 1326 1 to 1326 exact tiling clone,   1326/1326
(100 %)
0 diff
(100 %id)
NM_199453.3   HTR4.f 1 to 1440 1 to 1440 exact RefSeq,   1440/1440
(100 %)
0 diff
(100 %id)
AJ131725   HTR4.f 42 to 1302 1 to 1261 exact tiling clone,   1261/1261
(100 %)
0 diff
(100 %id)
AJ278981 brain (hippocampus) HTR4.f 42 to 1356 1 to 1315 exact tiling clone,   1315/1315
(100 %)
2 diff
(99.9 %id)
AJ011371 brain HTR4.f 46 to 1287 1 to 1241 exact     1241/1241
(100 %)
1 diff
(100.0 %id)
AK308471 adrenal gland HTR4.g 1 to 2273 2 to 2274 exact tiling clone,   2274/2274
(100 %)
2 diff
(100.0 %id)
DR000612 fetal brain HTR4.g 349 to 1019 7 to 677       671/677
(99 %)
0 diff
(100 %id)
NM_001040172.2   HTR4.h 1 to 1238 1 to 1238 exact RefSeq,   1238/1238
(100 %)
5 diff
(99.6 %id)
Y12507 gut HTR4.h 33 to 1233 4 to 1203 exact tiling clone,   1200/1208
(99 %)
4 diff
(99.7 %id)
AJ278982 brain (hippocampus) HTR4.i 1 to 1221 1 to 1221 exact tiling clone,   1221/1221
(100 %)
0 diff
(100 %id)
AK095223 colon HTR4.j 1 to 2271 2 to 2272 V5L tiling clone, available from FLJ,   2272/2272
(100 %)
1 diff
(100.0 %id)
DA425499 colon HTR4.j 1 to 499 2 to 500 V5L capped   499/499
(100 %)
1 diff
(99.8 %id)
DB312978 colon HTR4.j 1719 to 2271 554 to 1       554/554
(100 %)
1 diff
(99.9 %id)
DA351431 substantia nigra HTR4.k 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
AW868988 stomach_normal HTR4.l-u 1 to 533 1 to 534 N16H tiling clone,   534/534
(100 %)
28 diff
(94.8 %id)
AW869044 stomach_normal HTR4.l-u 6 to 495 22 to 512 exact tiling clone,   491/512
(95 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI